BAC Information

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BAC

Clone NameB6Ng01-282K20
Chromosome17 (Build37)
Map Location 12,537,720 - 12,700,847
singlet/doubletdoublet
Overlap geneLOC625753, Plg, Slc22a3, LOC100041192
Upstream genePark2, Agpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik
Downstream geneSlc22a2, Slc22a1, Igf2r, Air, EG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a, Smok2a, Smok2b, LOC667359, LOC100041352, LOC667372, LOC667384
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282K20.bB6Ng01-282K20.g
ACCGA081832GA081833
length1,1541,111
definitionB6Ng01-282K20.b B6Ng01-282K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,537,720 - 12,538,871)(12,699,748 - 12,700,847)
sequence
gaattcaggtcatctggctcagcagcaagcatcttcaccagcggatccct
ctcatgagccctctcatgcagcgtttctaacccagcacgaaatagatatg
cccatccgcaagacatggacaatggagtataatggaagttgacattattg
ctctctaaacattcttaagagtcaacaaggctgctgggcggtggtggtgc
atgcctttgatcccagcactcgggaggcagaggcaggcagatttttgagt
tcgaggccagcctggtctacagagtgagttccaggacagccagggctata
cagagaaaccctgtgtggaaaaaaaacaaaaacaaatacccccacacaca
cacaaaaaaaaaccccaaaacagaaacgtttcccttcattgatcttgcct
tcctgaagccaaaagactttgctttcttgccacccattcccatagaggga
gatggccaccagtaccctagacgtgtccatagagccagacttcttggtct
cacttggccagaaaatagccttgttgactttctgtccatcagtttttttg
ttgctatgtgcattggtatactcctccagggtgagaaaaagaaacaccct
agaaaaacatcaccactgaaggaagatgaatggttttgatgcagaaagag
gaagaaaagggggcttcatagagagtcctgttctctacctcctccaatcg
ttttaaaaacaggaacgtgccgggcgtggtggtgcaggcctttggtccca
gcactcgggaggcagaggcaggcagatttctgagttcgaagccagcctgg
tctacagagtgagttccaggacagaatgactgaatgtcccaagcagatga
tagctatgtgagacaatcataccagcttgataaccactcgctagttatgc
ctctgggacatgggtgacttgtgttgcttaaaaccatagtccctcagtgg
gaagcccatggatgcacaagttatttgggcaactgatcatctactaattt
agctagacttctttttagttgataggaaagaagagagtgaacgatataac
tccgaaaataatgaattgaaaattacctatttttccgatattctctattt
caccacaaacactttcgagtattatagtgatagaactcactgtatttttg
aggg
gaattcaaaccaactaagcaccgctgttttccggagagtctggatgcggg
gatatgcaaaggactttgacttgacttctccttttgaactttgggactaa
gcaaatcttttagccctgtgggctgtccctctgtcccattgtaacagtct
gtctctgctatttcgccatcatcccacccggagctggaggaatgtgatga
cgcaggtgcaggtgcaggtgcaggtatgaaactctgttcctggagctagc
tgactgtcactttgagagcacagtggcttgggcccctgcagcctaagagt
actggaggctattcctggagtcttcagagtcctgagtccagcgagtctgg
gtgatcctggaactcagtgaactctgacttggggtgtccctttagggcag
gctacaggtcagggcccttggtgcacagtgacactactgtgaaaccaccc
caatccgctctccgggtttactccggtcccgggcgcgcacgggcaggagg
ccgggagcttggaacgggaggagcagcccggggcgggctgccagggcgag
caagcgagcgaggcgggggcggcgggtgcagagctacgggcggcggcgcc
cgcgggtcactctcaggccgggcagcagcgacagggcgcagggtagcagg
gcgcaccatgcccacgttcgaccaggcactgaggaaggcgggcgagttcg
ggcgcttccagcggcgcgtgttcctgctgctgtgcctgacgggtgtcacc
ttcgccttcctcttcgtcggtgtggtcttcctgggcagccagcccgacta
ctattggtgtcgcgggccgcgcgccaccgcgctggccgagcgctgcgcct
gggagccccgagggaggagtggaacctcaccacaccggagctccacgtcc
cagcctggagcgccggcggccaaggcaactgccaccgctacctgctggga
ggccactaattcgcagctcagagctcagctgcgacccactcacctgccct
cccccaccgctcggcgcctctgtgtcctgcagcggtgactggcgctatgt
gagacccactctaccatcgctaggctaggtaagccctggactctgtgcac
caattctcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_12537720_12538871
seq2: B6Ng01-282K20.b_46_1199

seq1  GAATTCAGGTCATCTGGCTCAGCAGCAAGCATCTTCACCAGCGGATCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCATCTGGCTCAGCAGCAAGCATCTTCACCAGCGGATCCCT  50

seq1  CTCATGAGCCCTCTCATGCAGCGTTTCTAACCCAGCACGAAATAGATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAGCCCTCTCATGCAGCGTTTCTAACCCAGCACGAAATAGATATG  100

seq1  CCCATCCGCAAGACATGGACAATGGAGTATAATGGAAGTTGACATTATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCGCAAGACATGGACAATGGAGTATAATGGAAGTTGACATTATTG  150

seq1  CTCTCTAAACATTCTTAAGAGTCAACAAGGCTGCTGGGCGGTGGTGGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAAACATTCTTAAGAGTCAACAAGGCTGCTGGGCGGTGGTGGTGC  200

seq1  ATGCCTTTGATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTTTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTGATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTTTGAGT  250

seq1  TCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATA  300

seq1  CAGAGAAACCCTGTGTGGAAAAAAAACAAAAACAAATACCCCCACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCCTGTGTGGAAAAAAAACAAAAACAAATACCCCCACACACA  350

seq1  CACAAAAAAAAACCCCAAAACAGAAACGTTTCCCTTCATTGATCTTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAAAAACCCCAAAACAGAAACGTTTCCCTTCATTGATCTTGCCT  400

seq1  TCCTGAAGCCAAAAGACTTTGCTTTCTTGCCACCCATTCCCATAGAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAGCCAAAAGACTTTGCTTTCTTGCCACCCATTCCCATAGAGGGA  450

seq1  GATGGCCACCAGTACCCTAGACGTGTCCATAGAGCCAGACTTCTTGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCACCAGTACCCTAGACGTGTCCATAGAGCCAGACTTCTTGGTCT  500

seq1  CACTTGGCCAGAAAATAGCCTTGTTGACTTTCTGTCCATCAGTTTTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGCCAGAAAATAGCCTTGTTGACTTTCTGTCCATCAGTTTTTTTG  550

seq1  TTGCTATGTGCATTGGTATACTCCTCCAGGGTGAGAAAAAGAAACACCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATGTGCATTGGTATACTCCTCCAGGGTGAGAAAAAGAAACACCCT  600

seq1  AGAAAAACATCACCACTGAAGGAAGATGAATGGTTTTGATGCAGAAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACATCACCACTGAAGGAAGATGAATGGTTTTGATGCAGAAAGAG  650

seq1  GAAGAAAAGGGGGCTTCATAGAGAGTCCTGTTCTCTACCTCCTCCAATCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAGGGGGCTTCATAGAGAGTCCTGTTCTCTACCTCCTCCAATCG  700

seq1  TTTTAAAAACAGGAACGTGCCGGGCGTGGTGGTGCAGGCCTTTGGTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAACAGGAACGTGCCGGGCGTGGTGGTGCAGGCCTTTGGTCCCA  750

seq1  GCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAAGCCAGCCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAAGCCAGCCTGG  800

seq1  TCTACAGAGTGAGTTCCAGGACAGAATGACTGAATGTCCCAAGCAGATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAGTGAGTTCCAGGACAGAATGACTGAATGTCCCAAGCAGATGA  850

seq1  TAGCTATGTGAGACAATCATACCAGCTTGATAACCACTCGCTAGTTATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATGTGAGACAATCATACCAGCTTGATAACCACTCGCTAGTTATGC  900

seq1  CTCTGGGACAT-GGTGACTTGTGTTGCTTAAAACCATAGTCCCTCAGT-G  948
      ||||||||||| |||||||||||||||||||||||||||||||||||| |
seq2  CTCTGGGACATGGGTGACTTGTGTTGCTTAAAACCATAGTCCCTCAGTGG  950

seq1  GAAG-CCATGGATGCACAAGTTATTT-GGCAACTGATCATCTACTAA-TT  995
      |||| ||||||||||||||||||||| |||||||||||||||||||| ||
seq2  GAAGCCCATGGATGCACAAGTTATTTGGGCAACTGATCATCTACTAATTT  1000

seq1  AGCTAGAC-TCCTTTTAGTTGATTAGGAAAGAAGAGAGTGAACGATATAA  1044
      |||||||| || |||||||||| |||||||||||||||||||||||||||
seq2  AGCTAGACTTCTTTTTAGTTGA-TAGGAAAGAAGAGAGTGAACGATATAA  1049

seq1  ACCCGAAAATTAATGAAATGAAAA-TAACTATTTT--CGATA-TCTCTAT  1090
        ||||||| ||||||| |||||| || |||||||  ||||| |||||||
seq2  CTCCGAAAA-TAATGAATTGAAAATTACCTATTTTTCCGATATTCTCTAT  1098

seq1  TTCAACCACAAAACAC-TTCGAGTATTAATAAGTGATAAGACATCACCTG  1139
      ||| ||||| |||||| |||||||||||   |||||| |||  ||| |||
seq2  TTC-ACCAC-AAACACTTTCGAGTATTA--TAGTGAT-AGAACTCA-CTG  1142

seq1  TATTTTTTGAGGG  1152
      || ||||||||||
seq2  TA-TTTTTGAGGG  1154

seq1: chr17_12699748_12700847
seq2: B6Ng01-282K20.g_66_1176 (reverse)

seq1  CAGGAGA--TGGTGCACAGAGTC--AGGCTTACCT-GGCTGACGATGGTA  45
      |||||||  ||||||||||||||   ||||||||| | ||  ||||||||
seq2  CAGGAGAATTGGTGCACAGAGTCCAGGGCTTACCTAGCCTAGCGATGGTA  50

seq1  GAGTGGGTCTCCACATAGCGCCAGTCACCGCTGCAGGACACCAGAGGCGC  95
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  GAGTGGGTCT-CACATAGCGCCAGTCACCGCTGCAGGACA-CAGAGGCGC  98

seq1  GGAGCGGTTGGGGAAGGCA-GTGAGTGGGTCGCAGCTGAGCTCTGAGCTG  144
       ||||||| ||||| |||| ||||||||||||||||||||||||||||||
seq2  CGAGCGGTGGGGGAGGGCAGGTGAGTGGGTCGCAGCTGAGCTCTGAGCTG  148

seq1  -GTATTAGTGG-CTTCCAGCAGGTAGCGGTGGCAGTGGCCTTGGCCG-CG  191
       | |||||||| || ||||||||||||||||||||| |||||||||| ||
seq2  CGAATTAGTGGCCTCCCAGCAGGTAGCGGTGGCAGTTGCCTTGGCCGCCG  198

seq1  GCGCTC--AGCTGGGACGTGGAGCTCCGGTGTGGTGAGGTTCCACTCCT-  238
      ||||||   |||||||||||||||||||||||||||||||||||||||| 
seq2  GCGCTCCAGGCTGGGACGTGGAGCTCCGGTGTGGTGAGGTTCCACTCCTC  248

seq1  CCTCGGGGCT-CCAGGCGCAGCGCTCGGCCAGCGCGGTGGCGCGCGGCCC  287
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGGGCTCCCAGGCGCAGCGCTCGGCCAGCGCGGTGGCGCGCGGCCC  298

seq1  GCGACACCAATAGTAGTCGGGCTGGCTGCCCAGGAAGACCACACCGACGA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACACCAATAGTAGTCGGGCTGGCTGCCCAGGAAGACCACACCGACGA  348

seq1  AGAGGAAGGCGAAGGTGACACCCGTCAGGCACAGCAGCAGGAACACGCGC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGGCGAAGGTGACACCCGTCAGGCACAGCAGCAGGAACACGCGC  398

seq1  CGCTGGAAGCGCCCGAACTCGCCCGCCTTCCTCAGTGCCTGGTCGAACGT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGGAAGCGCCCGAACTCGCCCGCCTTCCTCAGTGCCTGGTCGAACGT  448

seq1  GGGCATGGTGCGCCCTGCTACCCTGCGCCCTGTCGCTGCTGCCCGGCCTG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGGTGCGCCCTGCTACCCTGCGCCCTGTCGCTGCTGCCCGGCCTG  498

seq1  AGAGTGACCCGCGGGCGCCGCCGCCCGTAGCTCTGCACCCGCCGCCCCCG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGACCCGCGGGCGCCGCCGCCCGTAGCTCTGCACCCGCCGCCCCCG  548

seq1  CCTCGCTCGCTTGCTCGCCCTGGCAGCCCGCCCCGGGCTGCTCCTCCCGT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGCTCGCTTGCTCGCCCTGGCAGCCCGCCCCGGGCTGCTCCTCCCGT  598

seq1  TCCAAGCTCCCGGCCTCCTGCCCGTGCGCGCCCGGGACCGGAGTAAACCC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCTCCCGGCCTCCTGCCCGTGCGCGCCCGGGACCGGAGTAAACCC  648

seq1  GGAGAGCGGATTGGGGTGGTTTCACAGTAGTGTCACTGTGCACCAAGGGC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCGGATTGGGGTGGTTTCACAGTAGTGTCACTGTGCACCAAGGGC  698

seq1  CCTGACCTGTAGCCTGCCCTAAAGGGACACCCCAAGTCAGAGTTCACTGA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCTGTAGCCTGCCCTAAAGGGACACCCCAAGTCAGAGTTCACTGA  748

seq1  GTTCCAGGATCACCCAGACTCGCTGGACTCAGGACTCTGAAGACTCCAGG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGATCACCCAGACTCGCTGGACTCAGGACTCTGAAGACTCCAGG  798

seq1  AATAGCCTCCAGTACTCTTAGGCTGCAGGGGCCCAAGCCACTGTGCTCTC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCTCCAGTACTCTTAGGCTGCAGGGGCCCAAGCCACTGTGCTCTC  848

seq1  AAAGTGACAGTCAGCTAGCTCCAGGAACAGAGTTTCATACCTGCACCTGC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGACAGTCAGCTAGCTCCAGGAACAGAGTTTCATACCTGCACCTGC  898

seq1  ACCTGCACCTGCGTCATCACATTCCTCCAGCTCCGGGTGGGATGATGGCG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCACCTGCGTCATCACATTCCTCCAGCTCCGGGTGGGATGATGGCG  948

seq1  AAATAGCAGAGACAGACTGTTACAATGGGACAGAGGGACAGCCCACAGGG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCAGAGACAGACTGTTACAATGGGACAGAGGGACAGCCCACAGGG  998

seq1  CTAAAAGATTTGCTTAGTCCCAAAGTTCAAAAGGAGAAGTCAAGTCAAAG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGATTTGCTTAGTCCCAAAGTTCAAAAGGAGAAGTCAAGTCAAAG  1048

seq1  TCCTTTGCATATCCCCGCATCCAGACTCTCCGGAAAACAGCGGTGCTTAG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCATATCCCCGCATCCAGACTCTCCGGAAAACAGCGGTGCTTAG  1098

seq1  TTGGTTTGAATTC  1100
      |||||||||||||
seq2  TTGGTTTGAATTC  1111