BAC Information

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BAC

Clone NameB6Ng01-282O04
Chromosome17 (Build37)
Map Location 29,089,951 - 29,190,528
singlet/doubletdoublet
Overlap geneKctd20, Stk38, Sfrs3
Upstream geneAnks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1
Downstream geneLOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888, Zfand3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282O04.bB6Ng01-282O04.g
ACCGA081982GA081983
length1,1251,101
definitionB6Ng01-282O04.b B6Ng01-282O04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,089,951 - 29,091,078)(29,189,435 - 29,190,528)
sequence
gaattcagcaaacgaactaacagacaggccaggaactctgaccaaccaag
ctctttcacggtgtctgtttgctgatagacaattgtttacctagaaattt
gagatttctttttaaatgatctcccaaacagaatgttggaataatattag
ttgtgacgaaccttgaattagaacgtcaaccccactccagaggaacaaaa
acaaaatcttaaagtagcagttctcaaacgcgttttgcaggtcgctagca
cggctcccagaaattaattctagaaatctagggtggacccctgagtctac
tagtgctggcaggcaaccaccccgcttgggccgccttggtaagccaggaa
ccggaccttaggaaaccaagattagcttggcctgaggactgtaaatactg
tctcatgtccttttctttctgttgacttactcctctcctgtccgtaatca
gtcgggagtcaagaagccctgattcggaaggctgtgtgagaaaggatagt
gctttctggagcccttacatgagagcaggaaatggctttttatccatatc
ctgttattgcctgggtgggagaaagatggcgtggatcaggctaacccacc
ttgtttctctcaggagcctgttggtaggatcgtgggagcttgagcatgtc
attaggtcttggctcccacctcagctctctgctttccttctcatggtatc
agccagggagtgcccggagcctggggggtctctgattccctgggatgtgc
cagcatcagtagtatttatgggcttttagttgtgggtatcaattcactag
ctacagaatatctgaatgatgcctagcttacacagtacaactgaagtaag
gcatgttagagacagtatcccaagcgtggctcagaattcccttgctgtct
ggcagaaatgagggttggatgacctccacatctgccaaaaggtgttttct
acatcttgatgtctcttgagaactccacaaggatattaaaggtagccatg
agggtttggcgttttcttggctttggtggcttggatgtctggctacttaa
tgatggttttgttgtgtgtagatgaacgtacaaaacaggtgtgcctttct
gaattgctgagttctgacttgtttt
gaattcttaaaaaacaaaacaaaatctaccaagtttgggtttggctgggg
gtggagaaagtcagaggtcagacatcttgcaaaagggctaccacgtcctc
tggctgagtctggcgtcctcggctctgtactcattctgaattatagttct
gtaagaagagcgctttgcagggagataggagctctcactcttccaccaaa
gaagaaggattctgcctaagcttgccagttccagccaggacatggcctga
ggaccgtccttctgccccatctttcacacctgtctctgtcccataaggcc
tcttgtctccaaagccatctgtctcccaaacaaaccccagatgccatccc
aagattaatcttccaaagacactccctgctccctctgtcagcccgccaga
cccaccctgctctcttgaaggctcagaaacagaagaacactgagcacaaa
cccaagactctgggttcgaattctccctccgctactccaagccttctctc
ctgcccctacaggttggggataataaggacacattaccttaagttatgtg
ctgagggtggagtgagtaagaaaacagtgccttgggtaagggtatcgccc
aataagagttcacgctgactgccagtgctggaggacctaggtttggttcc
caaaacggagaaacaaaaatggtatctggagtcatgaaccctttttattt
tttagattcattgttttatttttaaaagaattattagccgggcgtggtgg
cgcgcacctttaatcccagcacttgggaggcagaggcaggcggatttctg
agttcgaggccagcctggtctacagagtgagttctaggacagccagggct
acacagagaaaaccctgtctcaaaaaaaaaacaaaaaaagaatttgttta
ttttatgtatctgagtacacagttagctgtctttcagacactccagatcg
gaatcatctgagcccatggtggttgctgggaatcaacttcaggacctctt
ggagaagctagtcagtgcttctaaccagctgaagccattctctcagcccc
tgtttgtttaagtgtgatgtttaccacaagtccaggtgtgcacaggtttg
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_29089951_29091078
seq2: B6Ng01-282O04.b_42_1166

seq1  GAATTCAGCAAACGAACTAACAGACAGGCCAGGAACTCTGACCAACCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAAACGAACTAACAGACAGGCCAGGAACTCTGACCAACCAAG  50

seq1  CTCTTTCACGGTGTCTGTTTGCTGATAGACAATTGTTTACCTAGAAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCACGGTGTCTGTTTGCTGATAGACAATTGTTTACCTAGAAATTT  100

seq1  GAGATTTCTTTTTAAATGATCTCCCAAACAGAATGTTGGAATAATATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTCTTTTTAAATGATCTCCCAAACAGAATGTTGGAATAATATTAG  150

seq1  TTGTGACGAACCTTGAATTAGAACGTCAACCCCACTCCAGAGGAACAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACGAACCTTGAATTAGAACGTCAACCCCACTCCAGAGGAACAAAA  200

seq1  ACAAAATCTTAAAGTAGCAGTTCTCAAACGCGTTTTGCAGGTCGCTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCTTAAAGTAGCAGTTCTCAAACGCGTTTTGCAGGTCGCTAGCA  250

seq1  CGGCTCCCAGAAATTAATTCTAGAAATCTAGGGTGGACCCCTGAGTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCCCAGAAATTAATTCTAGAAATCTAGGGTGGACCCCTGAGTCTAC  300

seq1  TAGTGCTGGCAGGCAACCACCCCGCTTGGGCCGCCTTGGTAAGCCAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTGGCAGGCAACCACCCCGCTTGGGCCGCCTTGGTAAGCCAGGAA  350

seq1  CCGGACCTTAGGAAACCAAGATTAGCTTGGCCTGAGGACTGTAAATACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGACCTTAGGAAACCAAGATTAGCTTGGCCTGAGGACTGTAAATACTG  400

seq1  TCTCATGTCCTTTTCTTTCTGTTGACTTACTCCTCTCCTGTCCGTAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTCCTTTTCTTTCTGTTGACTTACTCCTCTCCTGTCCGTAATCA  450

seq1  GTCGGGAGTCAAGAAGCCCTGATTCGGAAGGCTGTGTGAGAAAGGATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGGAGTCAAGAAGCCCTGATTCGGAAGGCTGTGTGAGAAAGGATAGT  500

seq1  GCTTTCTGGAGCCCTTACATGAGAGCAGGAAATGGCTTTTTATCCATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTGGAGCCCTTACATGAGAGCAGGAAATGGCTTTTTATCCATATC  550

seq1  CTGTTATTGCCTGGGTGGGAGAAAGATGGCGTGGATCAGGCTAACCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATTGCCTGGGTGGGAGAAAGATGGCGTGGATCAGGCTAACCCACC  600

seq1  TTGTTTCTCTCAGGAGCCTGTTGGTAGGATCGTGGGAGCTTGAGCATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTCTCAGGAGCCTGTTGGTAGGATCGTGGGAGCTTGAGCATGTC  650

seq1  ATTAGGTCTTGGCTCCCACCTCAGCTCTCTGCTTTCCTTCTCATGGTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTCTTGGCTCCCACCTCAGCTCTCTGCTTTCCTTCTCATGGTATC  700

seq1  AGCCAGGGAGTGCCCGGAGCCTGGGGGGTCTCTGATTCCCTGGGATGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGAGTGCCCGGAGCCTGGGGGGTCTCTGATTCCCTGGGATGTGC  750

seq1  CAGCATCAGTAGTATTTATGGGCTTTTAGTTGTGGGTATCAATTCACTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCAGTAGTATTTATGGGCTTTTAGTTGTGGGTATCAATTCACTAG  800

seq1  CTACAGAATATCTGAATGATGCCTAGCTTACACAGTACAACTGAAGTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAATATCTGAATGATGCCTAGCTTACACAGTACAACTGAAGTAAG  850

seq1  GCATGTTAGAGACAGTATCCCAAGCGTGGCTCAGAATTCCCTTGCTGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTAGAGACAGTATCCCAAGCGTGGCTCAGAATTCCCTTGCTGTCT  900

seq1  GGCAGAAATGAGGGTTGGATGACCTCCACATCTGCC-AAAGGTGTTTTCT  949
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGCAGAAATGAGGGTTGGATGACCTCCACATCTGCCAAAAGGTGTTTTCT  950

seq1  ACATCTTGATGTCTCTTGAG-ACTCCACAGGGATATTAAAGGTAGCCATG  998
      |||||||||||||||||||| |||||||| ||||||||||||||||||||
seq2  ACATCTTGATGTCTCTTGAGAACTCCACAAGGATATTAAAGGTAGCCATG  1000

seq1  AGGGTTTGGCGTTTTTCTTGGCTTTGGTGGCTTTGGATGTCTGGCTACTT  1048
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  AGGGTTTGGCG-TTTTCTTGGCTTTGGTGGC-TTGGATGTCTGGCTACTT  1048

seq1  ATTGATGGTTTTGTTGTTGTTGTAGATG-ACGTACAAAAACAGTGTGCCT  1097
      | |||||||||||||||   |||||||| ||||||||||   ||||||||
seq2  AATGATGGTTTTGTTGT--GTGTAGATGAACGTACAAAACAGGTGTGCCT  1096

seq1  TTCTGTAATGCTGAGTTTCCTGACTTGTTTT  1128
      ||||| | |||||||||  ||||||||||||
seq2  TTCTGAATTGCTGAGTT--CTGACTTGTTTT  1125

seq1: chr17_29189435_29190528
seq2: B6Ng01-282O04.g_69_1169 (reverse)

seq1  ACAAACCTGGTGCACACCTGGACTTGTGGGTAAAACACTCACACTTTAAA  50
      |||||||| ||||||||||||||||||||   ||||| |||||| |||||
seq2  ACAAACCT-GTGCACACCTGGACTTGTGG--TAAACA-TCACAC-TTAAA  45

seq1  CAAAACAGGGGCTGGAGAG-ATGGC-TCAGGTGGTTAAGAGCACTGACT-  97
      | ||||||||||| ||||| ||||| |||| ||||||  |||||||||| 
seq2  C-AAACAGGGGCT-GAGAGAATGGCTTCAGCTGGTTAGAAGCACTGACTA  93

seq1  GC-TCTCC-AGAGGTCCTGAGTTTGATTCCCAGCAACCA-CAT-GGCTCA  143
      || ||||| |||||||||||  ||||||||||||||||| ||| ||||||
seq2  GCTTCTCCAAGAGGTCCTGAAGTTGATTCCCAGCAACCACCATGGGCTCA  143

seq1  GATGA-TCCGATCTGGAGTGTCTG-AAGACAGCT-ACTGTGTACTCAGAT  190
      ||||| |||||||||||||||||| ||||||||| |||||||||||||||
seq2  GATGATTCCGATCTGGAGTGTCTGAAAGACAGCTAACTGTGTACTCAGAT  193

seq1  ACATAAAATAAAC-AATTCTTTTTT--GTTTTTTTTTGAGACAGGG-TTT  236
      ||||||||||||| |||||||||||   |||||||||||||||||| |||
seq2  ACATAAAATAAACAAATTCTTTTTTTGTTTTTTTTTTGAGACAGGGTTTT  243

seq1  CTCTGTGTAGCCCTGGCTGTCCTAGAACTCACTCTGTAGACCAGGCTGGC  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTAGCCCTGGCTGTCCTAGAACTCACTCTGTAGACCAGGCTGGC  293

seq1  CTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAA  343

seq1  GGTGCGCGCCACCACGCCCGGCTAATAATTCTTTTAAAAATAAAACAATG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCGCGCCACCACGCCCGGCTAATAATTCTTTTAAAAATAAAACAATG  393

seq1  AATCTAAAAAATAAAAAGGGTTCATGACTCCAGATACCATTTTTGTTTCT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAAAAATAAAAAGGGTTCATGACTCCAGATACCATTTTTGTTTCT  443

seq1  CCGTTTTGGGAACCAAACCTAGGTCCTCCAGCACTGGCAGTCAGCGTGAA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTTGGGAACCAAACCTAGGTCCTCCAGCACTGGCAGTCAGCGTGAA  493

seq1  CTCTTATTGGGCGATACCCTTACCCAAGGCACTGTTTTCTTACTCACTCC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATTGGGCGATACCCTTACCCAAGGCACTGTTTTCTTACTCACTCC  543

seq1  ACCCTCAGCACATAACTTAAGGTAATGTGTCCTTATTATCCCCAACCTGT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAGCACATAACTTAAGGTAATGTGTCCTTATTATCCCCAACCTGT  593

seq1  AGGGGCAGGAGAGAAGGCTTGGAGTAGCGGAGGGAGAATTCGAACCCAGA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAGGAGAGAAGGCTTGGAGTAGCGGAGGGAGAATTCGAACCCAGA  643

seq1  GTCTTGGGTTTGTGCTCAGTGTTCTTCTGTTTCTGAGCCTTCAAGAGAGC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGGTTTGTGCTCAGTGTTCTTCTGTTTCTGAGCCTTCAAGAGAGC  693

seq1  AGGGTGGGTCTGGCGGGCTGACAGAGGGAGCAGGGAGTGTCTTTGGAAGA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGGTCTGGCGGGCTGACAGAGGGAGCAGGGAGTGTCTTTGGAAGA  743

seq1  TTAATCTTGGGATGGCATCTGGGGTTTGTTTGGGAGACAGATGGCTTTGG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTGGGATGGCATCTGGGGTTTGTTTGGGAGACAGATGGCTTTGG  793

seq1  AGACAAGAGGCCTTATGGGACAGAGACAGGTGTGAAAGATGGGGCAGAAG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGAGGCCTTATGGGACAGAGACAGGTGTGAAAGATGGGGCAGAAG  843

seq1  GACGGTCCTCAGGCCATGTCCTGGCTGGAACTGGCAAGCTTAGGCAGAAT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGTCCTCAGGCCATGTCCTGGCTGGAACTGGCAAGCTTAGGCAGAAT  893

seq1  CCTTCTTCTTTGGTGGAAGAGTGAGAGCTCCTATCTCCCTGCAAAGCGCT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTCTTTGGTGGAAGAGTGAGAGCTCCTATCTCCCTGCAAAGCGCT  943

seq1  CTTCTTACAGAACTATAATTCAGAATGAGTACAGAGCCGAGGACGCCAGA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTACAGAACTATAATTCAGAATGAGTACAGAGCCGAGGACGCCAGA  993

seq1  CTCAGCCAGAGGACGTGGTAGCCCTTTTGCAAGATGTCTGACCTCTGACT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCAGAGGACGTGGTAGCCCTTTTGCAAGATGTCTGACCTCTGACT  1043

seq1  TTCTCCACCCCCAGCCAAACCCAAACTTGGTAGATTTTGTTTTGTTTTTT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACCCCCAGCCAAACCCAAACTTGGTAGATTTTGTTTTGTTTTTT  1093

seq1  AAGAATTC  1094
      ||||||||
seq2  AAGAATTC  1101