BAC Information

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BAC

Clone NameB6Ng01-283B07
Chromosome17 (Build37)
Map Location 50,830,456 - 51,025,593
singlet/doubletdoublet
Overlap geneEG654432, Tbc1d5
Upstream geneKif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2
Downstream geneLOC100043451, LOC100043452, Satb1, EG628919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283B07.bB6Ng01-283B07.g
ACCGA082130GA082131
length1,1291,072
definitionB6Ng01-283B07.b B6Ng01-283B07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,024,477 - 51,025,593)(50,830,456 - 50,831,527)
sequence
gaattccgcagtggtcattcagttttaaacaagctcactaacctaagttc
attgatgttacagctctaggtgaggtggaataagcatactccactaagaa
ttagaaacatacatattcgcatgtggtgtttgtgtgaatgtttctcaggg
ataaatccttgggagacaaactagttggtcgtttggtaaatatatattta
actttattagaaatagccaaatggctttcagaacgctttccaaaatgact
atacaattctgcgttaaaattgataatatatgagagtttctagcaatttt
atctttttttgtgtgtgtgtcaatcctccatttttctttttttttaatta
ggtattttcctcatttacatttccaatgctatcccaaaagtcccccatac
cctccccaccccacccctctacctactttttggccctggcattcccctgt
actggggcatataaagtttgcgtgtccaatgggcttctctttccagtgat
ggccaactaggccatcttttgatacatatgcagctagagtcaagagctcc
ggggtactgcttagttcatattgttgttccacctatagggttgcagatcc
ctttagctccttgggtattttctctagctcctccattgggggccctgtga
tccatccaatagctgactgtgagcatccacttctgtgtttgctaggcccc
ggcgtagtctcactagagactatatcatcacactgttttgttatttttag
aagccattttaaactaggccctgctatataccttgctccccagatacttg
agagtttaaagtaagaggattactcaaaccaatttgggggaacctagggc
aactctgtctcaaaagcaaatcaagagaataaatgacaagagtcattcga
atggatatatcgtggcatcttagatgaggatccacattcttctacagtct
tctcttcctcttgggtcctgttagcgctagtagaaactaggggaagcaat
cacctcactcagctccagcacttcaggccccaccccaaagggtgggtata
ttcagaatacagatgattcccagaggtggtggtaataaaatgccagattc
agctgctggtgctttggcccagggtcctt

gaattccaaacgtcacacaaccacagaaactatctgcagctggcagaatc
atgcccctaccagagcacgaggcaaatcacagccagttgctgtggacaat
ctgaagcagccccatatctcacacccaggattaaaataaaaacatattct
tatgctatttcttttttcttttttttttaaagaaaccaaaattccagaat
tgtcactacatttttccctctgttttaagccattaattatgctgggtgta
gtggaaaactataatagagatattttttaatgaaataagcactttttgga
tcggtgaccaaggttttccggagactctcctactttaatctttataagtt
ttgatagtatcttttcccatggaaatataagcacccatgtccccaatgca
aaactgttactggcttccattctgatgttaatacatcttatagtatatag
gtggatttaattccacagttcttttctataacccagtgtcttctggctgc
tgttgttctagacagcctgaactaattactgtggggccttgagctgtgcc
ccacccccaccccaaaacacatacacacagacgcattttgtttactgatg
gcaagaaattgccttagttatctccttttgaatctacaatcctaaaacca
atggcagcctttgccacatcccatacacaccctgggaagctttagcggtt
tgtatatgctcagcccagtggcactgttgggaggtgtggccttgttggag
taggtgtaaccttgtggggtgggctttaatgcccttgtcctggctgcctg
gcaatctgtcttccactaggagtcttcagatgaagatgtagaactctcag
cccctcttgcaccatgcctacctggatgctaccatgttcctgccttgaca
ataatggactgaacctctgaacctgtaagccagccccaattaaatgctgt
ccttattagagtgccttgtcatggtgtctgttccacagcagtaactagaa
agaagccttctcatcccaataacattcagcctcccccacactatgtagga
gagaaggaggttagaagggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_51024477_51025593
seq2: B6Ng01-283B07.b_46_1174 (reverse)

seq1  AAGGA-CCTGG--CAAAGCA-CAGCAGCTGAATCT-GCA-TGTAT--ACA  42
      ||||| |||||  ||||||| |||||||||||||| ||| | |||   ||
seq2  AAGGACCCTGGGCCAAAGCACCAGCAGCTGAATCTGGCATTTTATTACCA  50

seq1  CCA-CTCTGGGAAATCATCTGTA-TCTGAATATA-CCAACCTTTGGGGTG  89
      ||| ||||||| ||||||||||| |||||||||| ||| |||||||||||
seq2  CCACCTCTGGG-AATCATCTGTATTCTGAATATACCCACCCTTTGGGGTG  99

seq1  GGGCTGAAAGTGCTGGAGCTGAGTGAGGTGATTGCTTCCCCTAGTTTCTA  139
      ||||   |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGAAGTGCTGGAGCTGAGTGAGGTGATTGCTTCCCCTAGTTTCTA  149

seq1  CTAGCGCTAACAGGA-CCAAGAGGAAGAGAAGACTGTAGAAGAATGTGGA  188
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTAGCGCTAACAGGACCCAAGAGGAAGAGAAGACTGTAGAAGAATGTGGA  199

seq1  TCCTCATCTAAGATGCCACGATATATCCATTCGAATGACTCTTGTCATTT  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATCTAAGATGCCACGATATATCCATTCGAATGACTCTTGTCATTT  249

seq1  ATTCTCTTGATTTGCTTTTGAGACAGAGTTGCCCTAGGTT-CCCCAAATT  287
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATTCTCTTGATTTGCTTTTGAGACAGAGTTGCCCTAGGTTCCCCCAAATT  299

seq1  GGTTTGAGTAATCCTCTTACTTTAAACTCTCAAGTATCTGGGGAGCAAGG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAGTAATCCTCTTACTTTAAACTCTCAAGTATCTGGGGAGCAAGG  349

seq1  TATATAGCAGGGCCTAGTTTAAAATGGCTTCTAAAAATAACAAAACAGTG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGCAGGGCCTAGTTTAAAATGGCTTCTAAAAATAACAAAACAGTG  399

seq1  TGATGATATAGTCTCTAGTGAGACTACGCCGGGGCCTAGCAAACACAGAA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATATAGTCTCTAGTGAGACTACGCCGGGGCCTAGCAAACACAGAA  449

seq1  GTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAG  499

seq1  GAGCTAGAGAAAATACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGAGAAAATACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGT  549

seq1  GGAACAACAATATGAACTAAGCAGTACCCCGGAGCTCTTGACTCTAGCTG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAACAATATGAACTAAGCAGTACCCCGGAGCTCTTGACTCTAGCTG  599

seq1  CATATGTATCAAAAGATGGCCTAGTTGGCCATCACTGGAAAGAGAAGCCC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTATCAAAAGATGGCCTAGTTGGCCATCACTGGAAAGAGAAGCCC  649

seq1  ATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCA  699

seq1  AAAAGTAGGTAGAGGGGTGGGGTGGGGAGGGTATGGGGGACTTTTGGGAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGGTAGAGGGGTGGGGTGGGGAGGGTATGGGGGACTTTTGGGAT  749

seq1  AGCATTGGAAATGTAAATGAGGAAAATACCTAATTAAAAAAAAAGAAAAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGGAAATGTAAATGAGGAAAATACCTAATTAAAAAAAAAGAAAAA  799

seq1  TGGAGGATTGACACACACACAAAAAAAGATAAAATTGCTAGAAACTCTCA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGATTGACACACACACAAAAAAAGATAAAATTGCTAGAAACTCTCA  849

seq1  TATATTATCAATTTTAACGCAGAATTGTATAGTCATTTTGGAAAGCGTTC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATCAATTTTAACGCAGAATTGTATAGTCATTTTGGAAAGCGTTC  899

seq1  TGAAAGCCATTTGGCTATTTCTAATAAAGTTAAATATATATTTACCAAAC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCCATTTGGCTATTTCTAATAAAGTTAAATATATATTTACCAAAC  949

seq1  GACCAACTAGTTTGTCTCCCAAGGATTTATCCCTGAGAAACATTCACACA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAACTAGTTTGTCTCCCAAGGATTTATCCCTGAGAAACATTCACACA  999

seq1  AACACCACATGCGAATATGTATGTTTCTAATTCTTAGTGGAGTATGCTTA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCACATGCGAATATGTATGTTTCTAATTCTTAGTGGAGTATGCTTA  1049

seq1  TTCCACCTCACCTAGAGCTGTAACATCAATGAACTTAGGTTAGTGAGCTT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCTCACCTAGAGCTGTAACATCAATGAACTTAGGTTAGTGAGCTT  1099

seq1  GTTTAAAACTGAATGACCACTGCGGAATTC  1117
      ||||||||||||||||||||||||||||||
seq2  GTTTAAAACTGAATGACCACTGCGGAATTC  1129


seq1: chr17_50830456_50831527
seq2: B6Ng01-283B07.g_72_1134

seq1  ACGTCACACAACCACAGAAACTATCTGCAGCTGGCAGAATCATGCCCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCACACAACCACAGAAACTATCTGCAGCTGGCAGAATCATGCCCCTA  50

seq1  CCAGAGCACGAGGCAAATCACAGCCAGTTGCTGTGGACAATCTGAAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCACGAGGCAAATCACAGCCAGTTGCTGTGGACAATCTGAAGCAG  100

seq1  CCCCATATCTCACACCCAGGATTAAAATAAAAACATATTCTTATGCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATATCTCACACCCAGGATTAAAATAAAAACATATTCTTATGCTATT  150

seq1  TCTTTTTTCTTTTTTTTTTAAAGAAACCAAAATTCCAGAATTGTCACTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTCTTTTTTTTTTAAAGAAACCAAAATTCCAGAATTGTCACTAC  200

seq1  ATTTTTCCCTCTGTTTTAAGCCATTAATTATGCTGGGTGTAGTGGAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCCTCTGTTTTAAGCCATTAATTATGCTGGGTGTAGTGGAAAAC  250

seq1  TATAATAGAGATATTTTTTAATGAAATAAGCACTTTTTGGATCGGTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAGAGATATTTTTTAATGAAATAAGCACTTTTTGGATCGGTGACC  300

seq1  AAGGTTTTCCGGAGACTCTCCTACTTTAATCTTTATAAGTTTTGATAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTCCGGAGACTCTCCTACTTTAATCTTTATAAGTTTTGATAGTA  350

seq1  TCTTTTCCCATGGAAATATAAGCACCCATGTCCCCAATGCAAAACTGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCCATGGAAATATAAGCACCCATGTCCCCAATGCAAAACTGTTA  400

seq1  CTGGCTTCCATTCTGATGTTAATACATCTTATAGTATATAGGTGGATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTCCATTCTGATGTTAATACATCTTATAGTATATAGGTGGATTTA  450

seq1  ATTCCACAGTTCTTTTCTATAACCCAGTGTCTTCTGGCTGCTGTTGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACAGTTCTTTTCTATAACCCAGTGTCTTCTGGCTGCTGTTGTTCT  500

seq1  AGACAGCCTGAACTAATTACTGTGGGGCCTTGAGCTGTGCCCCACCCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCCTGAACTAATTACTGTGGGGCCTTGAGCTGTGCCCCACCCCCA  550

seq1  CCCCAAAACACATACACACAGACGCATTTTGTTTACTGATGGCAAGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAACACATACACACAGACGCATTTTGTTTACTGATGGCAAGAAAT  600

seq1  TGCCTTAGTTATCTCCTTTTGAATCTACAATCCTAAAACCAATGGCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAGTTATCTCCTTTTGAATCTACAATCCTAAAACCAATGGCAGCC  650

seq1  TTTGCCACATCCCATACACACCCTGGGAAGCTTTAGCGGTTTGTATATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCACATCCCATACACACCCTGGGAAGCTTTAGCGGTTTGTATATGC  700

seq1  TCAGCCCAGTGGCACTGTTGGGAGGTGTGGCCTTGTTGGAGTAGGTGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCAGTGGCACTGTTGGGAGGTGTGGCCTTGTTGGAGTAGGTGTAA  750

seq1  CCTTGTGGGGTGGGCTTTAATGCCCTTGTCCTGGCTGCCTGGCAATCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGGGGTGGGCTTTAATGCCCTTGTCCTGGCTGCCTGGCAATCTGT  800

seq1  CTTCCACTAGGAGTCTTCAGATGAAGATGTAGAACTCTCAGCCCCTCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACTAGGAGTCTTCAGATGAAGATGTAGAACTCTCAGCCCCTCTTG  850

seq1  CACCATGCCTACCTGGATGCTACCATGTTCCTGCCTTGACAATAATGGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGCCTACCTGGATGCTACCATGTTCCTGCCTTGACAATAATGGAC  900

seq1  TGAACCTCTGAACCTGTAAGCCAGCCCCAATTAAATGCTGTCCTTATTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTCTGAACCTGTAAGCCAGCCCCAATTAAATGCTGTCCTTATTAG  950

seq1  AGGTGCCTTGGTCATGGTGTCTGTT-CACAGCAGTAACTAAGACAGAAGC  999
      | ||||||| ||||||||||||||| ||||||||||||| ||| ||||||
seq2  A-GTGCCTT-GTCATGGTGTCTGTTCCACAGCAGTAACT-AGAAAGAAGC  997

seq1  CTTCTCCATCCCAAT-ACATTCAGCCTCCCCAACACTATGTAGGAGAGAA  1048
      ||||| ||||||||| ||||||||||||||| |||||||||||||||| |
seq2  CTTCT-CATCCCAATAACATTCAGCCTCCCCCACACTATGTAGGAGAG-A  1045

seq1  AGGAGGTTAGAGGGGGAAGGGGGG  1072
      |||||||||      |||||||||
seq2  AGGAGGTTA------GAAGGGGGG  1063


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