BAC Information

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BAC

Clone NameB6Ng01-284G20
Chromosome17 (Build37)
Map Location 63,070,906 - 63,228,979
singlet/doubletdoublet
Overlap geneEfna5
Upstream genenone
Downstream geneFbxl17, Ppia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284G20.bB6Ng01-284G20.g
ACCGA083130GA083131
length9121,058
definitionB6Ng01-284G20.b B6Ng01-284G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,070,906 - 63,071,816)(63,227,938 - 63,228,979)
sequence
gaattcttaaaatcactaccaggcaacaacatcatcagacgtacagtgaa
caagatggcactcagtagagtggatgctgttgccagaagctgccctactc
ttgccggtatagttctgaagttctcttaaaaacctgtgactcaaagtcct
ctgagtgacagccttctaatgtgcatccccagaattccttgcaggtctgc
cttgtgcactctgtacaggaacagcaacataaagccttgggaattgcctg
gtgatgagtcagcataaaatgaagagtaaattatttaacctatgttgtgg
tttccttacctatagagtcagaactgcaccacacacgcaaacccctacat
aagaaagacatagaaataaaccaaaccatggaaatgtaaatgagctaaat
acctaataaaaaatggaaaaaaaaaaaacaaaccaaagaggcacggcact
tatattctaaagagataagttcttccatactgatctcctcagggcaaggc
cagtttcctctctcactactgtggacaagggtccccatctcttctagcta
taccatttttgggtatacacacccaactccactaggtaaacatagaacgg
agatacccctgtgcccgcatttactggactatttacaatagcccacatgg
aataaaaccatgtttctgtaaacagactagccaacaaaggataagtagca
taaacacacaagagttttttactcagccatattaaagaatgaaattttgt
cattagatggagaatggaagcaaatggagacttgtgctataaagcaaaac
aagcccgatacagaaaggcaataggaaattgcattttctattagtggttt
ctagaaattctttatagacagagaaagagagagagagaggaagagggagg
gggagtggaaga

gaattcagaggttttcccggttgtcaagggtcagctgggatgaagagctg
atttctccaggaacgctcatgattgcccatcctagggagaaatcgcccca
ccctgttactccggccggcccagtcacacccaggtagcctaaagtgcttg
cctagctcatccttgaaagtttgcgttttttaataaaaagggtgtcgtgg
gggtgggaattagaatgggaagctatttcctctttgacacgccactagcc
actattaggaaaagagaaagagatgacgctctgccagagaatatgccttt
tattaaagctgacaagacaaatagaacaagctttccatttgcaatggtgt
taaaagcaagtctaattacgttgcttggggtaggcacctttggactttac
tggggcagcatgcatggaacatcagtttgtatttttaaacttaaatgatt
tatccaataaggtagagccagttatttgaatttgggacattttgctcttg
ttggtcactcaaaaataattaagtggaatctttctgtcctggtattcatt
cattagaacggtggctgtctcagtttgtcttagatttaagcagaaggaag
tatcagctagacccctcttcacctgtcaagctaggctcaggaagttcccg
gacattttatttcagttttatgcttttgctaccgttgttttggtttgaga
ttagcaaattgatttttgtcataggtcatgttttttaatagatctgccct
tcctaaagaaaactctttctctcaggatgccattgtagctttgaaccctg
ctcagttataatctgtagactttaaaaaagaccaagaaatagtcttaaag
cagcatgttaatttgaagtctgtgaaaataacttacctatttggcccatg
agcagtttgatgggcatcccaaagaaagaattcggggacctttcttaaga
tacaatattttatattctttaccgaattaatgtagggccttttatcgtgg
gtaatgctgttgcattaaaaccttaccttaaaaaggtaggtaggtggata
ggtagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_63070906_63071816
seq2: B6Ng01-284G20.b_44_955

seq1  GAATTCTTAAAATCACTACCAGGCAACAACATCATCAGACGTACAGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAAATCACTACCAGGCAACAACATCATCAGACGTACAGTGAA  50

seq1  CAAGATGGCACTCAGTAGAGTGGATGCTGTTGCCAGAAGCTGCCCTACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGGCACTCAGTAGAGTGGATGCTGTTGCCAGAAGCTGCCCTACTC  100

seq1  TTGCCGGTATAGTTCTGAAGTTCTCTTAAAAACCTGTGACTCAAAGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCGGTATAGTTCTGAAGTTCTCTTAAAAACCTGTGACTCAAAGTCCT  150

seq1  CTGAGTGACAGCCTTCTAATGTGCATCCCCAGAATTCCTTGCAGGTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGACAGCCTTCTAATGTGCATCCCCAGAATTCCTTGCAGGTCTGC  200

seq1  CTTGTGCACTCTGTACAGGAACAGCAACATAAAGCCTTGGGAATTGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCACTCTGTACAGGAACAGCAACATAAAGCCTTGGGAATTGCCTG  250

seq1  GTGATGAGTCAGCATAAAATGAAGAGTAAATTATTTAACCTATGTTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAGTCAGCATAAAATGAAGAGTAAATTATTTAACCTATGTTGTGG  300

seq1  TTTCCTTACCTATAGAGTCAGAACTGCACCACACACGCAAACCCCTACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTACCTATAGAGTCAGAACTGCACCACACACGCAAACCCCTACAT  350

seq1  AAGAAAGACATAGAAATAAACCAAACCATGGAAATGTAAATGAGCTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGACATAGAAATAAACCAAACCATGGAAATGTAAATGAGCTAAAT  400

seq1  ACCTAATAAAAAATGGAAAAAAAAAAAACAAACCAAAGAGGCACGGCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATAAAAAATGGAAAAAAAAAAAACAAACCAAAGAGGCACGGCACT  450

seq1  TATATTCTAAAGAGATAAGTTCTTCCATACTGATCTCCTCAGGGCAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCTAAAGAGATAAGTTCTTCCATACTGATCTCCTCAGGGCAAGGC  500

seq1  CAGTTTCCTCTCTCACTACTGTGGACAAGGGTCCCCATCTCTTCTAGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCTCTCTCACTACTGTGGACAAGGGTCCCCATCTCTTCTAGCTA  550

seq1  TACCATTTTTGGGTATACACACCCAACTCCACTAGGTAAACATAGAACGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTTTTGGGTATACACACCCAACTCCACTAGGTAAACATAGAACGG  600

seq1  AGATACCCCTGTGCCCGCATTTACTGGACTATTTACAATAGCCCACATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCCCTGTGCCCGCATTTACTGGACTATTTACAATAGCCCACATGG  650

seq1  AATAAAACCATGTTTCTGTAAACAGACTAGCCAACAAAGGATAAGTAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACCATGTTTCTGTAAACAGACTAGCCAACAAAGGATAAGTAGCA  700

seq1  TAAACACACAAGAGTTTTTTACTCAGCCATATTAAAGAATGAAATTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACACAAGAGTTTTTTACTCAGCCATATTAAAGAATGAAATTTTGT  750

seq1  CATTAGATGGAGAATGGAAGCAAATGGAGACTTGTGCTATAAAGCAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGATGGAGAATGGAAGCAAATGGAGACTTGTGCTATAAAGCAAAAC  800

seq1  AAGCCCGATACAGAAAGGCAATAGGAAATTGCATTTTCTATTAGTGGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCGATACAGAAAGGCAATAGGAAATTGCATTTTCTATTAGTGGTTT  850

seq1  CTAG-AATTCTTTATAGACAGAGAAAGAGAGAGAGAGAGGAAGAGGGAGG  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAATTCTTTATAGACAGAGAAAGAGAGAGAGAGAGGAAGAGGGAGG  900

seq1  GGGAGTGGAAGA  911
      ||||||||||||
seq2  GGGAGTGGAAGA  912


seq1: chr17_63227938_63228979
seq2: B6Ng01-284G20.g_68_1125 (reverse)

seq1  AAACTACTTATC--ACTACCTA-CTTTTTAAAGTAA-GTTTTAATGCAAC  46
      ||||||| ||||   ||||||| |||||||| |||| |||||||||||||
seq2  AAACTACCTATCCACCTACCTACCTTTTTAAGGTAAGGTTTTAATGCAAC  50

seq1  AGCAT--ACCACGATAAAAGG-CCTACA-TAAATCGGT-AAGAATATTAA  91
      |||||   ||||||||||||| |||||| ||| ||||| |||||||| ||
seq2  AGCATTACCCACGATAAAAGGCCCTACATTAATTCGGTAAAGAATATAAA  100

seq1  ATATTGTATCTT-AGAAAGGTCCCCG-ATTCTTTCTTTGGGATG-CCATC  138
      |||||||||||| ||||||||||||| ||||||||||||||||| |||||
seq2  ATATTGTATCTTAAGAAAGGTCCCCGAATTCTTTCTTTGGGATGCCCATC  150

seq1  AAACTGCTCAT-GGCCAAATA-GTAAGTTATTTTCACAGACTTCAAATTA  186
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  AAACTGCTCATGGGCCAAATAGGTAAGTTATTTTCACAGACTTCAAATTA  200

seq1  ACATGCTGCTTTAAGACTA-TTCTTGGTCTTTTTTTAAAGTCTACAGATT  235
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  ACATGCTGCTTTAAGACTATTTCTTGGTC-TTTTTTAAAGTCTACAGATT  249

seq1  ATAACTGAGCA-GGTTCAAAGCTACAATGGCATCCTGAGAGAAAGAGTTT  284
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGAGCAGGGTTCAAAGCTACAATGGCATCCTGAGAGAAAGAGTTT  299

seq1  TCTTTAGGAAGGGCAGATCTATTAAAAAACATGACCTATGACAAAAATCA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGGAAGGGCAGATCTATTAAAAAACATGACCTATGACAAAAATCA  349

seq1  ATTTGCTAATCTCAAACC-AAACAACGGTAGCAAAAGCATAAAACTGAAA  383
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTTGCTAATCTCAAACCAAAACAACGGTAGCAAAAGCATAAAACTGAAA  399

seq1  TAAAATGTCCGGGAACTTCCTGAGCCTAGCTTGACAGGTGAAGAGGGGTC  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTCCGGGAACTTCCTGAGCCTAGCTTGACAGGTGAAGAGGGGTC  449

seq1  TAGCTGATACTTCCTTCTGCTTAAATCTAAGACAAACTGAGACAGCCACC  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGATACTTCCTTCTGCTTAAATCTAAGACAAACTGAGACAGCCACC  499

seq1  GTTCTAATGAATGAATACCAGGACAGAAAGATTCCACTTAATTATTTTTG  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAATGAATGAATACCAGGACAGAAAGATTCCACTTAATTATTTTTG  549

seq1  AGTGACCAACAAGAGCAAAATGTCCCAAATTCAAATAACTGGCTCTACCT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCAACAAGAGCAAAATGTCCCAAATTCAAATAACTGGCTCTACCT  599

seq1  TATTGGATAAATCATTTAAGTTTAAAAATACAAACTGATGTTCCATGCAT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGATAAATCATTTAAGTTTAAAAATACAAACTGATGTTCCATGCAT  649

seq1  GCTGCCCCAGTAAAGTCCAAAGGTGCCTACCCCAAGCAACGTAATTAGAC  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCCAGTAAAGTCCAAAGGTGCCTACCCCAAGCAACGTAATTAGAC  699

seq1  TTGCTTTTAACACCATTGCAAATGGAAAGCTTGTTCTATTTGTCTTGTCA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTAACACCATTGCAAATGGAAAGCTTGTTCTATTTGTCTTGTCA  749

seq1  GCTTTAATAAAAGGCATATTCTCTGGCAGAGCGTCATCTCTTTCTCTTTT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAATAAAAGGCATATTCTCTGGCAGAGCGTCATCTCTTTCTCTTTT  799

seq1  CCTAATAGTGGCTAGTGGCGTGTCAAAGAGGAAATAGCTTCCCATTCTAA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATAGTGGCTAGTGGCGTGTCAAAGAGGAAATAGCTTCCCATTCTAA  849

seq1  TTCCCACCCCCACGACACCCTTTTTATTAAAAAACGCAAACTTTCAAGGA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACCCCCACGACACCCTTTTTATTAAAAAACGCAAACTTTCAAGGA  899

seq1  TGAGCTAGGCAAGCACTTTAGGCTACCTGGGTGTGACTGGGCCGGCCGGA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAGGCAAGCACTTTAGGCTACCTGGGTGTGACTGGGCCGGCCGGA  949

seq1  GTAACAGGGTGGGGCGATTTCTCCCTAGGATGGGCAATCATGAGCGTTCC  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGGGTGGGGCGATTTCTCCCTAGGATGGGCAATCATGAGCGTTCC  999

seq1  TGGAGAAATCAGCTCTTCATCCCAGCTGACCCTTGACAACCGGGAAAACC  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAATCAGCTCTTCATCCCAGCTGACCCTTGACAACCGGGAAAACC  1049

seq1  TCTGAATTC  1042
      |||||||||
seq2  TCTGAATTC  1058


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