BAC Information

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BAC

Clone NameB6Ng01-286D03
Chromosome17 (Build37)
Map Location 35,916,989 - 35,918,147
singlet/doubletsinglet
Overlap genenone
Upstream geneCyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663
Downstream geneIer3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286D03.bB6Ng01-286D03.g
ACCGA084454GA084455
length1,1661,182
definitionB6Ng01-286D03.b B6Ng01-286D03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgtcctttggtttggagaactgcccacccacctcactggaggt
tgaggctctttccttccttgagcctgctgtgggcctggctcactggcact
caggaacccacacttttctcaccagcctctgaatgacatctgctgatagg
tgtcggtgtctccttcaagagatggaaaggctggcagcacccaagaaaga
catttaacagagaccattccaggttgggaggccgaggcaagttcaaggcc
agcctgagccacgtagaaaacctcgtctcaaccctttttcctggcccctc
aaaagataaattaatctagatacttaggaggcagaaacaggcagatctct
tgtgagtttaaggccaactgggtctacgcaattagtccctgtctcaaaag
atggaagacgagagacagaaaccttcccggcataaccaatctgtggtgag
agaagcagaagctgtggctggctggtcagagaaagaaagagcgctgcata
ttgatcggaaagaggaaggagaaaaacctctggatgctatcgcagcagga
aaagcctcaccagctgcacacttaagattctcatgctttgctgcgcctca
gttatgtgtcaataaaaaaattaaacaacaaaaggcaagtaaacacttac
catgcaaaagatcctgttcagagaacctaagcatgaagtggaaggaaaca
cacaaagaactctcaaaacttagcaatgagaaacacacaacctgctgcaa
agacaggatagggccaggcccagtgcacacgcctatagtccagtgcacac
acctgtaggcccagtgcacacacctgtaggcccagtgcacacacctgtag
gtccagtgcacacacctttaattccagtgcacatacctgtaggcacatac
ctgttcacacaggtctagtcccagaaatgtgaaagtttggggatgcatct
gctgtggttattcatggctgccaacttgactatacatggaaatcaattaa
aaacccaaatggctaggcacagctatgagaaatttttttttttcttaatt
aaatcatttgaagtagaagacccatttcttttttcatttttttaaggagt
catttattatttatgtatatgaagtaacactgtagctttatataatatgc
ttgtgagcatcatgtg
gaattcactttgtagaccaggctggcctcgaactcaagaaatccacctgc
ctctgccttctgagtgctgggattaaaggcgtgcaccaccatgcctggcc
aaactgcagaatcttgagatctgaccagctgcttggaagaaacagaaacc
aatgaagttagctaaaagaggtgtagaccaaccaagtcacttggaaagga
caccttccaacgtgatgaggagcctgaagctgtgcgatgtgatccagggc
gctcagcttttgtgagcagccacctatactgggatgggctttggtgatgc
tatcgtttagacatttctgcaagtaacccagtaatcccccacccatattg
ctataagtaaaccaaataaacttattggttcatcaagttagactttggtg
gtattcgtactttggtctgtcatgggctccctatctggggtgagagatgt
gtgtaggctctcctcaggaaaagttttgtcacacaacaaagtgactcctg
caggttgtccattgacttacacatgcacttacacatacacatgaaagaaa
aaatgggatgccaggtggtgatggcacacacctttaaacccaaaacatgg
gaagcagaggcaggtggatctctgagtttaaggtcagtttggccttcaga
gtgagttccaggacaaccagggctgcacagacaaaccctgacttgaaaaa
aaaaaaaagaagagcaaataggagaaaaaagaaaataacaacatcaaaaa
cactgacctttctcacacgaacgtagtcaccttggcaagaagtcaagcca
acttccacacgctccaagagcccctccagttgttcccgcacatcccgggc
tcggcgcatggatctgaactgtacaaagttttcatagcaccattgggaag
agtagccactctcagcccactgtgaagatgaagtgccttaagtacacagc
agactcaaatcccccagacttcccaaatttccacttgcccagtgacctgt
gtgtacacaatttagcagaccagtggtcctccaacagggagagagtggac
acgggcattgtcgcatggacacttatcttgggccgtagaagaatgaatgg
tgaccgacagcatagcagcatgtcagattctcttctgacaggctatatac
cttgtaagcgtggggttaggcaagcagggtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_35916989_35918147
seq2: B6Ng01-286D03.b_44_1209

seq1  GAATTCCTGTCCTTTGGTTTGGAGAACTGCCCACCCACCTCACTGGAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCCTTTGGTTTGGAGAACTGCCCACCCACCTCACTGGAGGT  50

seq1  TGAGGCTCTTTCCTTCCTTGAGCCTGCTGTGGGCCTGGCTCACTGGCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTCTTTCCTTCCTTGAGCCTGCTGTGGGCCTGGCTCACTGGCACT  100

seq1  CAGGAACCCACACTTTTCTCACCAGCCTCTGAATGACATCTGCTGATAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACCCACACTTTTCTCACCAGCCTCTGAATGACATCTGCTGATAGG  150

seq1  TGTCGGTGTCTCCTTCAAGAGATGGAAAGGCTGGCAGCACCCAAGAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGGTGTCTCCTTCAAGAGATGGAAAGGCTGGCAGCACCCAAGAAAGA  200

seq1  CATTTAACAGAGACCATTCCAGGTTGGGAGGCCGAGGCAAGTTCAAGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAACAGAGACCATTCCAGGTTGGGAGGCCGAGGCAAGTTCAAGGCC  250

seq1  AGCCTGAGCCACGTAGAAAACCTCGTCTCAACCCTTTTTCCTGGCCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAGCCACGTAGAAAACCTCGTCTCAACCCTTTTTCCTGGCCCCTC  300

seq1  AAAAGATAAATTAATCTAGATACTTAGGAGGCAGAAACAGGCAGATCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATAAATTAATCTAGATACTTAGGAGGCAGAAACAGGCAGATCTCT  350

seq1  TGTGAGTTTAAGGCCAACTGGGTCTACGCAATTAGTCCCTGTCTCAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTTAAGGCCAACTGGGTCTACGCAATTAGTCCCTGTCTCAAAAG  400

seq1  ATGGAAGACGAGAGACAGAAACCTTCCCGGCATAACCAATCTGTGGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGACGAGAGACAGAAACCTTCCCGGCATAACCAATCTGTGGTGAG  450

seq1  AGAAGCAGAAGCTGTGGCTGGCTGGTCAGAGAAAGAAAGAGCGCTGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGAAGCTGTGGCTGGCTGGTCAGAGAAAGAAAGAGCGCTGCATA  500

seq1  TTGATCGGAAAGAGGAAGGAGAAAAACCTCTGGATGCTATCGCAGCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCGGAAAGAGGAAGGAGAAAAACCTCTGGATGCTATCGCAGCAGGA  550

seq1  AAAGCCTCACCAGCTGCACACTTAAGATTCTCATGCTTTGCTGCGCCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTCACCAGCTGCACACTTAAGATTCTCATGCTTTGCTGCGCCTCA  600

seq1  GTTATGTGTCAATAAAAAAATTAAACAACAAAAGGCAAGTAAACACTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTGTCAATAAAAAAATTAAACAACAAAAGGCAAGTAAACACTTAC  650

seq1  CATGCAAAAGATCCTGTTCAGAGAACCTAAGCATGAAGTGGAAGGAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAAAGATCCTGTTCAGAGAACCTAAGCATGAAGTGGAAGGAAACA  700

seq1  CACAAAGAACTCTCAAAACTTAGCAATGAGAAACACACAACCTGCTGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGAACTCTCAAAACTTAGCAATGAGAAACACACAACCTGCTGCAA  750

seq1  AGACAGGATAGGGCCAGGCCCAGTGCACACGCCTATAGTCCAGTGCACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGATAGGGCCAGGCCCAGTGCACACGCCTATAGTCCAGTGCACAC  800

seq1  ACCTGTAGGCCCAGTGCACACACCTGTAGGCCCAGTGCACACACCTGTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTAGGCCCAGTGCACACACCTGTAGGCCCAGTGCACACACCTGTAG  850

seq1  GTCCAGTGCACACACCTTTAATTCCAGTGCACATACCTGTAGGCACATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTGCACACACCTTTAATTCCAGTGCACATACCTGTAGGCACATAC  900

seq1  CTGTTCACACAGGTCTAGTCCCAGAAATGTGAAAGTTTGGGGATGCATCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCACACAGGTCTAGTCCCAGAAATGTGAAAGTTTGGGGATGCATCT  950

seq1  GCTGTGGTTATTCATGGCTGCCAACTTGACTATACATGG-AATCAATT-A  998
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  GCTGTGGTTATTCATGGCTGCCAACTTGACTATACATGGAAATCAATTAA  1000

seq1  AAACCCAAATGGCTAGGCACAGCTATGAGAAA--TTTTTTTTTCTTAATT  1046
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  AAACCCAAATGGCTAGGCACAGCTATGAGAAATTTTTTTTTTTCTTAATT  1050

seq1  AAATCATTTGAAGTAGGAAGACCCATTTC-TTTTTCATTTTTTTAA-GAG  1094
      ||||||||||||||| ||||||||||||| |||||||||||||||| |||
seq2  AAATCATTTGAAGTA-GAAGACCCATTTCTTTTTTCATTTTTTTAAGGAG  1099

seq1  TCATTTATTTATTTTATGTATATG-AGT-ACACTGTAGCTTTAT---ATA  1139
      |||||||||   |||||||||||| ||| |||||||||||||||   |||
seq2  TCATTTATT--ATTTATGTATATGAAGTAACACTGTAGCTTTATATAATA  1147

seq1  TGGCTGTGAGCCATCATGTG  1159
      ||  |||||| |||||||||
seq2  TGCTTGTGAG-CATCATGTG  1166