BAC Information

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BAC

Clone NameB6Ng01-287P12
Chromosome17 (Build37)1 (Build37)
Map Location 45,262,674 - 45,262,79523,539,208 - 23,540,127
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneClic5, Runx2, Supt3h, 4930564C03Rik
Downstream geneEG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287P12.bB6Ng01-287P12.g
ACCGA085754GA085755
length421918
definitionB6Ng01-287P12.b B6Ng01-287P12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,262,674 - 45,262,795)(23,539,208 - 23,540,127)
sequence
tctaagcatttttttttcaaggaaattgtagtggcaatgaaagaatttcc
tcgacttctccctcatttcctttcttcctttcttcctttcttcctttctt
cctttcttcctttcttcctttcttccttccttccttccttccttccatac
atacttccttccttccttccttcctccctccctccctccctccctcccac
tctctttctctctctctctctctctctctctctctctctttctttctttc
tttcaagatttattttattatctatgagtacactgtagctctcttctgac
ataccagaagagggcatcagatctcattacagatggttgtgagccaccat
gtcatggttgctgggaattgaattcaggacctctgggagagcagtcttaa
cctcagagccatctgtccagc
gaattcaattctctttcctattccagacagggctgctattatttttttca
agacaacattaactgagcaaggaatttgtcaaagaaactctcagtaaagg
aaggaggaagcagggaaaaactgatttttttctctcttttatattttttt
taaaaagccactaaaagattggggtgcttgatgtattacagaaattatct
tattattgtagcaatgaaaagctttcatacccatccatttattcctgatg
tgatttttccctccatgaaaattctttgtttttgaaaagtatttgtcaag
ccgcaggtataattcacactaatcagggacacattttaaagggaaggttt
gaggtgccccattaagggtgacaatctcagactcacgcagctacttaaca
atctgctccttccccagtgtgtttgcccgccacctaaaatgaattgtcct
tagaaacttgcaatagaaaagtaatttcattgtacagcctacagtgagtg
tctcttctgtgagactatttgatatatgtgagggtagatgaatgcttgct
gtttgcatgatctatataccctgcaatttatagaaattgcctaaattttc
aggagaaggtgtttgtttgtttgtttgcatcttgaaaatttgatatattg
ccttctcatcatttcaaaccaattctgtttcatttttcatatgttctctt
ctgattcatattaatttttaaattattttttgaaattatattattccctt
gtcttttccctccctccagtccctcccatatttccccttctttgtctctt
taaagtttgtagtctcttttttcattaattattgatatagatagatagat
atagagatcagataaatagaattaggtagatagattaggtaagataggat
agatagatagatagataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_45262674_45262795
seq2: B6Ng01-287P12.b_356_473 (reverse)

seq1  GCTGGAGAGATGGCTCAGAGGTTAAGAGCACTGGCTGTTCTTCCGGAGGT  50
      |||||| ||||||||| ||||||||||       ||| ||| || |||||
seq2  GCTGGACAGATGGCTCTGAGGTTAAGA-------CTGCTCTCCCAGAGGT  43

seq1  CCTGAGTTCAATTCCCAGCAACC---ACATGGTGGCTCACAACCATCTGT  97
      ||||| |||||||||||||||||   ||||||||||||||||||||||||
seq2  CCTGAATTCAATTCCCAGCAACCATGACATGGTGGCTCACAACCATCTGT  93

seq1  AATGAGATCTGATGCCCTCTTCTGG  122
      |||||||||||||||||||||||||
seq2  AATGAGATCTGATGCCCTCTTCTGG  118

seq1: chr1_23539208_23540127
seq2: B6Ng01-287P12.g_70_986

seq1  GAATTCAATTCTCTTTCCTATTCCAGACAGGGCTGCTATTATTTTTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCTCTTTCCTATTCCAGACAGGGCTGCTATTATTTTTTTCA  50

seq1  AGACAACATTAACTGAGCAAGGAATTTGTCAAAGAAACTCTCAGTAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACATTAACTGAGCAAGGAATTTGTCAAAGAAACTCTCAGTAAAGG  100

seq1  AAGGAGGAAGCAGGGAAAAACTGATTTTTTTCTCTCTTTTATATTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGAAGCAGGGAAAAACTGATTTTTTTCTCTCTTTTATATTTTTTT  150

seq1  TAAAAAGCCACTAAAAGATTGGGGTGCTTGATGTATTACAGAAATTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCCACTAAAAGATTGGGGTGCTTGATGTATTACAGAAATTATCT  200

seq1  TATTATTGTAGCAATGAAAAGCTTTCATACCCATCCATTTATTCCTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTGTAGCAATGAAAAGCTTTCATACCCATCCATTTATTCCTGATG  250

seq1  TGATTTTTCCCTCCATGAAAATTCTTTGTTTTTGAAAAGTATTTGTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTCCCTCCATGAAAATTCTTTGTTTTTGAAAAGTATTTGTCAAG  300

seq1  CCGCAGGTATAATTCACACTAATCAGGGACACATTTTAAAGGGAAGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGGTATAATTCACACTAATCAGGGACACATTTTAAAGGGAAGGTTT  350

seq1  GAGGTGCCCCATTAAGGGTGACAATCTCAGACTCACGCAGCTACTTAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCCCCATTAAGGGTGACAATCTCAGACTCACGCAGCTACTTAACA  400

seq1  ATCTGCTCCTTCCCCAGTGTGTTTGCCCGCCACCTAAAATGAATTGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTCCTTCCCCAGTGTGTTTGCCCGCCACCTAAAATGAATTGTCCT  450

seq1  TAGAAACTTGCAATAGAAAAGTAATTTCATTGTACAGCCTACAGTGAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACTTGCAATAGAAAAGTAATTTCATTGTACAGCCTACAGTGAGTG  500

seq1  TCTCTTCTGTGAGACTATTTGATATATGTGAGGGTAGATGAATGCTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTGTGAGACTATTTGATATATGTGAGGGTAGATGAATGCTTGCT  550

seq1  GTTTGCATGATCTATATACCCTGCAATTTATAGAAATTGCCTAAATTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCATGATCTATATACCCTGCAATTTATAGAAATTGCCTAAATTTTC  600

seq1  AGGAGAAGGTGTTTGTTTGTTTGTTTGCATCTTGAAAATTTGATATATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGGTGTTTGTTTGTTTGTTTGCATCTTGAAAATTTGATATATTG  650

seq1  CCTTCTCATCATTTCAAACCAATTCTGTTTCATTTTTCATATGTTCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCATCATTTCAAACCAATTCTGTTTCATTTTTCATATGTTCTCTT  700

seq1  CTGATTCATATTAATTTTTAAATTATTTTTTGAAATTATATTATT-CCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGATTCATATTAATTTTTAAATTATTTTTTGAAATTATATTATTCCCTT  750

seq1  GTCTTTTCCCTCCCTCCAGTCCCTCCCATA-TTCCCCTTCTTTGTCTCTT  798
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTCTTTTCCCTCCCTCCAGTCCCTCCCATATTTCCCCTTCTTTGTCTCTT  800

seq1  TAAAGTTTGTAGTCTCTTTTTTCATTAATTATTGATATAGATAGATAGAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTGTAGTCTCTTTTTTCATTAATTATTGATATAGATAGATAGAT  850

seq1  ATAGAGATCAGATAAATAG-ATTAGGTAGATAGATTAGGTAGATAGATAG  897
      ||||||||||||||||||| |||||||||||||||||||||   ||||||
seq2  ATAGAGATCAGATAAATAGAATTAGGTAGATAGATTAGGTA---AGATAG  897

seq1  ATAGATAGATAGATAGATAGATA  920
         ||||||||||||||||||||
seq2  ---GATAGATAGATAGATAGATA  917