BAC Information

Click to search

BAC

Clone NameB6Ng01-288E14
Chromosome17 (Build37)
Map Location 50,597,044 - 50,715,990
singlet/doubletdoublet
Overlap genePlcl2
Upstream geneDaam2, Kif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
Downstream geneEG654432, Tbc1d5, LOC100043451, LOC100043452
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288E14.bB6Ng01-288E14.g
ACCGA085989GA085990
length1,1491,158
definitionB6Ng01-288E14.b B6Ng01-288E14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,714,864 - 50,715,990)(50,597,044 - 50,598,188)
sequence
gaattcagagagagtgaccaagaacccccagggctagggtgacaccacca
gaaataagggaaggatggtcactggggcaaagctggtgcagatcttctct
gcctcttgttgggaagctgaaaggtaagatgaagccactgaagatgctcc
gaggtgttgaagcagaaggaaggtactggctggcatcggctgtggaaaac
agagaagagatgtctaatcccagtaaagaagggggagaagcagagatcag
gtctgtaacagccgtagtagctacagatctaaggggaaggacaaagcaaa
caaacagtaacctcagctgtcagttccaaaatcctggcttgcatcacccc
tgacatgggcgggcaattaaacgagtatgtacagaaaacaagtatcagct
ttgctctgagaggcacagaactgagcaagtcacagggaatcatgagtttc
ccaatgattaaaatggaaaatctaaaagttcctcaaagtgactttgtttt
ttatagagaagaatttgacagctattgtaggctagtatttttcctcctcc
tgtttcccctatcctccctgatctgagtatcaagagttcgaaacgggtgc
tcactggaattatgtggcagtgatctagagagaacaatggcgctgggcag
tggtagcacacgcctctagtcccagcatttgaggggcagaggcagatgga
tctctgtgagtttgaggccagcctgatctacagagtgagttccaggacag
ccagggccacgcagagaaaccctgtctcaaaaaaagtagaaagagacagt
cagtcagtcagagagacagacagaaagacagacaaagagacagaaacaga
gagacggacagagaatagctttaactttatttgctaagttgagggaataa
attggaagacttgtttctgtttatacttttaatttgctttattataggct
ttgttataaaatgtttgccccacattttacctgtacactttcagatacca
gtaaacaaattatagaaaaccatgaagaacaccttagccatggtaatttg
aaactgattgccacatttctctaccaccattggtttgttgtttgtttttt
ttttaataaaaagccctagccttgtattatggtatatttaatggctctg
gaattcaatttaaagacatcactaacaaaataccagatagtgttatagtt
agcctttctagccatatgtaggaagtagttctatttctaatgggctttaa
tatgagaaatcccacaggcaagaggaaaatgtgtttgcattgactcttcc
acagccatctccagtcatacagaaaattctcttcctctagggctttgatg
ttctgtgagagatttaccaaaatgttaaggatgctttctctacacggtgg
catcatgggtaacgaatgcttctttgtattttctcagctttctgcatcta
gcataaagaccagttgcatttataaaaaaacaaaacaaaacaaaacaaaa
caataacaaaaaacactttctgaaaaatctttttaaaattaaaaaaaaag
tatttgttgttctaattcttttttataggtgtacagtttcctctttatgt
tttatagtctcttcagacctgacagctcagtcaggaaaaggaaaagacaa
agaccagtggtcccagagaaataagaggcgggactccctttccactgggg
cccaggagtcaggtgaatcttgtggcagcatctctgatcacatacattac
aactgaaaaaatattccagcaaaagttggcaatactgaaggccttactca
acctagtgctggtgtggcagggcaggggagactaaaccaaccaggtgctg
ctctgataagagacgagaagctatccagtcaatcctctgggtgtagatcc
tgaggacttaaagaagcctgcgcagtctgagtgctaagtctctgggggct
gcttccccgggcagcactgagagccagcacaggcagccaggggaaggtgg
tgaggagcctactgaggagactgaggccaggcacaagactggtcctctac
aggaagcactcagcttttgtcaaagtggttgtgtaagcagcagaggcctg
ctctcgtttgctgagactctcctacgtcgttctgtcatgaagtggctaaa
agcaagaggctcaaaacagcccagtccttacttgggatctgaggctacag
tttcatgttcagagagttatttttcccaccttagcctgtgtagccagcag
ccagcggtgggggtaggggcctaataagagaatagggggtggggattact
ccttgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_50714864_50715990
seq2: B6Ng01-288E14.b_47_1195 (reverse)

seq1  CAGAG-CATTAATTATA-CATAATTACAAGGCTAGGCTTTTTTATTAAAA  48
      ||||| |||||| |||| ||||| ||||||||||||  ||||||||||||
seq2  CAGAGCCATTAAATATACCATAA-TACAAGGCTAGGGCTTTTTATTAAAA  49

seq1  AAAAAAC-AACAACAA--CAATGTTTGT--AGAAATGTTGC-ATCAG-TT  91
      ||||||| ||||||||  ||||| | ||  |||||||| || ||||| ||
seq2  AAAAAACAAACAACAAACCAATGGTGGTAGAGAAATGTGGCAATCAGTTT  99

seq1  CAAATTA-CAT-GCTAA-GTGTTC-TCATG--TTTCTATATTTTGTTT-C  134
      ||||||| ||| ||||| |||||| |||||  |||||||| ||||||| |
seq2  CAAATTACCATGGCTAAGGTGTTCTTCATGGTTTTCTATAATTTGTTTAC  149

seq1  TGGTATCTGAAAGTGTACAG--TAAATGTGGG--CAACA-TTTATAACAA  179
      ||||||||||||||||||||   |||||||||   |||| ||||||||||
seq2  TGGTATCTGAAAGTGTACAGGTAAAATGTGGGGCAAACATTTTATAACAA  199

seq1  AG-CTATAATAAAGCAAATTAAAAGTATAAACAGAAACAAGTCTTTCAAT  228
      || |||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGCCTATAATAAAGCAAATTAAAAGTATAAACAGAAACAAGTCTTCCAAT  249

seq1  TTATTCCCTCAACTTAGCAAAT-AAGTTAAAGCTATTCTCTGTCCGTCTC  277
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTATTCCCTCAACTTAGCAAATAAAGTTAAAGCTATTCTCTGTCCGTCTC  299

seq1  TCTGTTTCTGTCTCTTTGTCTGTCTTTCTGTCTGTCTCTCTGACTGACTG  327
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCTGTCTCTTTGTCTGTCTTTCTGTCTGTCTCTCTGACTGACTG  349

seq1  ACTGTCTCTTTCTACTTTTTTTGAGACAGGGTTTCTCTGCGTGGCCCTGG  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTCTTTCTACTTTTTTTGAGACAGGGTTTCTCTGCGTGGCCCTGG  399

seq1  CTGTCCTGGAACTCACTCTGTAGATCAGGCTGGCCTCAAACTCACAGAGA  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGAACTCACTCTGTAGATCAGGCTGGCCTCAAACTCACAGAGA  449

seq1  TCCATCTGCCTCTGCCCCTCAAATGCTGGGACTAGAGGCGTGTGCTACCA  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTGCCTCTGCCCCTCAAATGCTGGGACTAGAGGCGTGTGCTACCA  499

seq1  CTGCCCAGCGCCATTGTTCTCTCTAGATCACTGCCACATAATTCCAGTGA  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCAGCGCCATTGTTCTCTCTAGATCACTGCCACATAATTCCAGTGA  549

seq1  GCACCCGTTTCGAACTCTTGATACTCAGATCAGGGAGGATAGGGGAAACA  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCGTTTCGAACTCTTGATACTCAGATCAGGGAGGATAGGGGAAACA  599

seq1  GGAGGAGGAAAAATACTAGCCTACAATAGCTGTCAAATTCTTCTCTATAA  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAAAAATACTAGCCTACAATAGCTGTCAAATTCTTCTCTATAA  649

seq1  AAAACAAAGTCACTTTGAGGAACTTTTAGATTTTCCATTTTAATCATTGG  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGTCACTTTGAGGAACTTTTAGATTTTCCATTTTAATCATTGG  699

seq1  GAAACTCATGATTCCCTGTGACTTGCTCAGTTCTGTGCCTCTCAGAGCAA  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCATGATTCCCTGTGACTTGCTCAGTTCTGTGCCTCTCAGAGCAA  749

seq1  AGCTGATACTTGTTTTCTGTACATACTCGTTTAATTGCCCGCCCATGTCA  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATACTTGTTTTCTGTACATACTCGTTTAATTGCCCGCCCATGTCA  799

seq1  GGGGTGATGCAAGCCAGGATTTTGGAACTGACAGCTGAGGTTACTGTTTG  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGATGCAAGCCAGGATTTTGGAACTGACAGCTGAGGTTACTGTTTG  849

seq1  TTTGCTTTGTCCTTCCCCTTAGATCTGTAGCTACTACGGCTGTTACAGAC  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTGTCCTTCCCCTTAGATCTGTAGCTACTACGGCTGTTACAGAC  899

seq1  CTGATCTCTGCTTCTCCCCCTTCTTTACTGGGATTAGACATCTCTTCTCT  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTCTGCTTCTCCCCCTTCTTTACTGGGATTAGACATCTCTTCTCT  949

seq1  GTTTTCCACAGCCGATGCCAGCCAGTACCTTCCTTCTGCTTCAACACCTC  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCACAGCCGATGCCAGCCAGTACCTTCCTTCTGCTTCAACACCTC  999

seq1  GGAGCATCTTCAGTGGCTTCATCTTACCTTTCAGCTTCCCAACAAGAGGC  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATCTTCAGTGGCTTCATCTTACCTTTCAGCTTCCCAACAAGAGGC  1049

seq1  AGAGAAGATCTGCACCAGCTTTGCCCCAGTGACCATCCTTCCCTTATTTC  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGATCTGCACCAGCTTTGCCCCAGTGACCATCCTTCCCTTATTTC  1099

seq1  TGGTGGTGTCACCCTAGCCCTGGGGGTTCTTGGTCACTCTCTCTGAATTC  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGTCACCCTAGCCCTGGGGGTTCTTGGTCACTCTCTCTGAATTC  1149

seq1: chr17_50597044_50598188
seq2: B6Ng01-288E14.g_70_1227

seq1  GAATTCAATTTAAAGACATCACTAACAAAATACCAGATAGTGTTATAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTAAAGACATCACTAACAAAATACCAGATAGTGTTATAGTT  50

seq1  AGCCTTTCTAGCCATATGTAGGAAGTAGTTCTATTTCTAATGGGCTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCTAGCCATATGTAGGAAGTAGTTCTATTTCTAATGGGCTTTAA  100

seq1  TATGAGAAATCCCACAGGCAAGAGGAAAATGTGTTTGCATTGACTCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAAATCCCACAGGCAAGAGGAAAATGTGTTTGCATTGACTCTTCC  150

seq1  ACAGCCATCTCCAGTCATACAGAAAATTCTCTTCCTCTAGGGCTTTGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCATCTCCAGTCATACAGAAAATTCTCTTCCTCTAGGGCTTTGATG  200

seq1  TTCTGTGAGAGATTTACCAAAATGTTAAGGATGCTTTCTCTACACGGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAGAGATTTACCAAAATGTTAAGGATGCTTTCTCTACACGGTGG  250

seq1  CATCATGGGTAACGAATGCTTCTTTGTATTTTCTCAGCTTTCTGCATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGGGTAACGAATGCTTCTTTGTATTTTCTCAGCTTTCTGCATCTA  300

seq1  GCATAAAGACCAGTTGCATTTATAAAAAAACAAAACAAAACAAAACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAGACCAGTTGCATTTATAAAAAAACAAAACAAAACAAAACAAAA  350

seq1  CAATAACAAAAAACACTTTCTGAAAAATCTTTTTAAAATTAAAAAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACAAAAAACACTTTCTGAAAAATCTTTTTAAAATTAAAAAAAAAG  400

seq1  TATTTGTTGTTCTAATTCTTTTTTATAGGTGTACAGTTTCCTCTTTATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTGTTCTAATTCTTTTTTATAGGTGTACAGTTTCCTCTTTATGT  450

seq1  TTTATAGTCTCTTCAGACCTGACAGCTCAGTCAGGAAAAGGAAAAGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGTCTCTTCAGACCTGACAGCTCAGTCAGGAAAAGGAAAAGACAA  500

seq1  AGACCAGTGGTCCCAGAGAAATAAGAGGCGGGACTCCCTTTCCACTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGTGGTCCCAGAGAAATAAGAGGCGGGACTCCCTTTCCACTGGGG  550

seq1  CCCAGGAGTCAGGTGAATCTTGTGGCAGCATCTCTGATCACATACATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGTCAGGTGAATCTTGTGGCAGCATCTCTGATCACATACATTAC  600

seq1  AACTGAAAAAATATTCCAGCAAAAGTTGGCAATACTGAAGGCCTTACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAAAATATTCCAGCAAAAGTTGGCAATACTGAAGGCCTTACTCA  650

seq1  ACCTAGTGCTGGTGTGGCAGGGCAGGGGAGACTAAACCAACCAGGTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTGCTGGTGTGGCAGGGCAGGGGAGACTAAACCAACCAGGTGCTG  700

seq1  CTCTGATAAGAGACGAGAAGCTATCCAGTCAATCCTCTGGGTGTAGATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATAAGAGACGAGAAGCTATCCAGTCAATCCTCTGGGTGTAGATCC  750

seq1  TGAGGACTTAAAGAAGCCTGCGCAGTCTGAGTGCTAAGTCTCT-GGGGCT  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGAGGACTTAAAGAAGCCTGCGCAGTCTGAGTGCTAAGTCTCTGGGGGCT  800

seq1  GCTTCCCC-GGCAGCACTGAGAGCCAGCACAGGCAGCCAGGGGAAGGTGG  848
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCCGGGCAGCACTGAGAGCCAGCACAGGCAGCCAGGGGAAGGTGG  850

seq1  TGAGGAGCCTACTGAGGAGACTGAGGCCAGGCACAAGACTGGTCCTCTAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGCCTACTGAGGAGACTGAGGCCAGGCACAAGACTGGTCCTCTAC  900

seq1  AGGAAGCACTCAGCTTTTGTCAAAGTGGTTGTGTAAGCAGCAGAGGCCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCACTCAGCTTTTGTCAAAGTGGTTGTGTAAGCAGCAGAGGCCTG  950

seq1  CTCTCGTTTGCTGAGACTCTCCTACGTCGTTCTGTCATGAAGTGGCTAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGTTTGCTGAGACTCTCCTACGTCGTTCTGTCATGAAGTGGCTAAA  1000

seq1  AGCAGGAGGCTCAAAACAGCCCAGTCCTTACTT-GGATCTGAAGGCTACA  1047
      |||| |||||||||||||||||||||||||||| ||||||| ||||||||
seq2  AGCAAGAGGCTCAAAACAGCCCAGTCCTTACTTGGGATCTG-AGGCTACA  1049

seq1  GTTTCATGTTCAGAGAAGTTA-TTTTCCCACC-TAG-CTGTGTAG-CAGC  1093
      ||||||||||||||| ||||| |||||||||| ||| |||||||| ||||
seq2  GTTTCATGTTCAGAG-AGTTATTTTTCCCACCTTAGCCTGTGTAGCCAGC  1098

seq1  AG-CAGCGGT-GGGGTAGGG--CAAATAGAGAG-ATAGGGGGTGGGG--T  1136
      || ||||||| |||||||||  | |||| |||| |||||||||||||  |
seq2  AGCCAGCGGTGGGGGTAGGGGCCTAATA-AGAGAATAGGGGGTGGGGATT  1147

seq1  ACTC--TGTAG  1145
      ||||  |||||
seq2  ACTCCTTGTAG  1158