BAC Information

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BAC

Clone NameB6Ng01-288J08
Chromosome17 (Build37)10 (Build37)
Map Location 73,300,315 - 73,301,173107,844,098 - 107,844,465
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAlk, Ypel5, Lbh
Downstream geneLycat, LOC668709, Capn13, LOC100043666, Galnt14, Ehd3, LOC240160, Xdh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288J08.bB6Ng01-288J08.g
ACCGA086209GA086210
length864695
definitionB6Ng01-288J08.b B6Ng01-288J08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(73,300,315 - 73,301,173)(107,844,098 - 107,844,465)
sequence
gaattctgagctctaatctcagcactgccttaccacctgcctgtgtgtcc
cttaaaccaggtcagctggctaaacagagctaagctctcagtcctatcta
aaccttcagtctccttgcttgcaaaggagcctggtaattttctccaatgg
tgacatcttagcgcttccccgcccactctgcccctttcctgattccttgt
gctgaggaaatggcagcttataccagctgtgctcctgaaggtcactgagg
gccaggctccttcccatatgaaggccattctcagatagggtgacaagaat
cagctgagcagtgcctccctcggcagtgccggtggctgagaaaggatgct
gaggagccttgggtatagcatgttttatctgtccctcgtggtggtttcat
ggtgaatggatggggactgtgatagtcagccaggaaccaagagctttatg
taaattatacctcaattataaagagtgtgtgaagctcaacaagaccccaa
ggaaagatgagtctttggtgcagttgcaggggacttatgcaagcttgagt
gttaaagcaaaggttgggaggagggaatgggagagtcacagagagagacc
cagacgattgtggacagaggagaatagattggcttgagaagctaatattt
ccctcctgatctagccatcctaatgactcctgtctgagacatggaactgg
cttcgaagtaaaatgaaaaacaatactgcctttctctgggttcagatgac
gggacatctttatgatacttctgcgtctgtaggagcctcataccatcatg
ataactgctgtacagagtctagtccgcttttacccatgcctgccgctgtg
tactggcacttaga
gaattctagccaaatgccattgcctggcaaatacagaagtggatgctcac
agtcatctatcggatggaacacagggcccccaatggaggacctacagaaa
gtacccaaggagctgaaggggtctgcaaccctataggtggaacaacatta
tgaactaaccagtacccccagagctcttatctctagctgcatatgtagca
gaagatggcctagttagccatcattgggaagagaggccccttggtcttgc
aaactttatctgccccaatacaggggaacaccagggccaagaagtgggag
tggtgggtaggggagcagggtggggtctctgttttaatcaccttaacctt
ttgtgcaagcaaagaatgccagatgtttttcaatggcagataagatcaaa
agaacaacaaaaaggtagcaattacagtgaaggtgactttcctacagctt
gtctttgtgggctcataataaagttagaatcatcaacgaactaggtggtt
gccatggtattgagcgtttgagaattaccatcaggtcccatacgaccaga
taggatgaaaagatctgactgggaacgtcataactcaagagtccatgatt
cctctaaaacctactgttcttagtcagggttctcctgctgtgaggagaca
ccatgaccagaactcttgcaagaaaacatgggggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_73300315_73301173
seq2: B6Ng01-288J08.b_43_906 (reverse)

seq1  TCTAAGTGCCA-CCCACAGCCCCAGACTTGGG-AATAGGGTGATGGACT-  47
      |||||||||||   ||||||  ||| | |||| || || |   | |||| 
seq2  TCTAAGTGCCAGTACACAGCGGCAGGCATGGGTAAAAGCGGACTAGACTC  50

seq1  GGTAGCCCATTTATCTTGATCTTA-GAGGCTCCCTGAGACACAGAACTTT  96
       |||   || ||||| ||||  || ||||||||   |||| ||||| | |
seq2  TGTACAGCAGTTATCATGATGGTATGAGGCTCCTACAGACGCAGAAGTAT  100

seq1  CACTAATGAAGTGAGGATATCT-ATCCCAGAGCAGGCCAGTATGGCTTTT  145
      || ||| || ||   |  |||| | ||||||| | | |||||| | ||||
seq2  CA-TAAAGATGTCCCGTCATCTGAACCCAGAGAAAGGCAGTATTGTTTTT  149

seq1  CACTCTACTTGGAAGCCAAACCCATCTTTCACTCAGGACTCATTTGGCTG  195
      || | ||||| |||||||   |||| | |||  ||||| ||||| || ||
seq2  CATTTTACTTCGAAGCCAGTTCCATGTCTCAGACAGGAGTCATTAGGATG  199

seq1  GCTAGAACTGGAGGGAAATTTTAGCTTCTCCAG-CAATCTCTTCAACTCT  244
      |||||| | |||||||||| |||||||||| || |||||| |||  ||||
seq2  GCTAGATCAGGAGGGAAATATTAGCTTCTCAAGCCAATCTATTCTCCTCT  249

seq1  GTCCACACTTGTCTGGGTCTCTCTCTCTGACTCTCCCATTCCCTCCTCCC  294
      ||||||| | |||||||||||||||| |||||||||||||||||||||||
seq2  GTCCACAATCGTCTGGGTCTCTCTCTGTGACTCTCCCATTCCCTCCTCCC  299

seq1  AACCTTTGCTTTAACACTCAAGCTTGCCTAAGTCCCCTGCAACTGCACCA  344
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AACCTTTGCTTTAACACTCAAGCTTGCATAAGTCCCCTGCAACTGCACCA  349

seq1  AAGACTCATCTTTCCCTGGGGTCTTGTTGAGCTTCACACACTCTTTATAA  394
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAGACTCATCTTTCCTTGGGGTCTTGTTGAGCTTCACACACTCTTTATAA  399

seq1  TTGAGGTATAATTTACATAAAGCTCTCGGTTCCTGGCTGACTATCACAGT  444
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTGAGGTATAATTTACATAAAGCTCTTGGTTCCTGGCTGACTATCACAGT  449

seq1  CCCCATCCATTCACCATGAAACCACCACGAGGGACAGATAAAACATGCTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCCATTCACCATGAAACCACCACGAGGGACAGATAAAACATGCTA  499

seq1  TACCCAAGGCTCCTCAGCATCCTTTCTCAGCCACCGGCACTGCCGAGGGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAGGCTCCTCAGCATCCTTTCTCAGCCACCGGCACTGCCGAGGGA  549

seq1  GGCACTGCTCAGCTGATTCTTGTCACCCTATCTGAGAATGGCCTTCATAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGCTCAGCTGATTCTTGTCACCCTATCTGAGAATGGCCTTCATAT  599

seq1  GGGAAGGAGCCTGGCCCTCAGTGACCTTCAGGAGCACAGCTGGTATAAGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGAGCCTGGCCCTCAGTGACCTTCAGGAGCACAGCTGGTATAAGC  649

seq1  TGCCATTTCCTCAGCACAAGGAATCAGGAAAGGGGCAGAGTGGGCGGGGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTCCTCAGCACAAGGAATCAGGAAAGGGGCAGAGTGGGCGGGGA  699

seq1  AGCGCTAAGATGTCACCATTGGAGAAAACTACCAGGCTCCTTTGCAAGCA  744
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCGCTAAGATGTCACCATTGGAGAAAATTACCAGGCTCCTTTGCAAGCA  749

seq1  AGGAGACTGAAGGTTTAGATAGGACTGAGAGCTTAGCTCTGTTTAGCCAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTGAAGGTTTAGATAGGACTGAGAGCTTAGCTCTGTTTAGCCAG  799

seq1  CTGACCTGGTTTAAGGGACACACAGGCAGTTGGTAAGGCAGTGCTGAGAT  844
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTGACCTGGTTTAAGGGACACACAGGCAGGTGGTAAGGCAGTGCTGAGAT  849

seq1  TAGAGCTCAGAATTC  859
      |||||||||||||||
seq2  TAGAGCTCAGAATTC  864

seq1: chr10_107844098_107844465
seq2: B6Ng01-288J08.g_393_761

seq1  TCTCTGTTTTAATCACCTTAACCTTTTGTGCAAGCAAAGAATGCCAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTTTAATCACCTTAACCTTTTGTGCAAGCAAAGAATGCCAGATG  50

seq1  TTTTTCAATGGCAGATAAGATCAAAAGAACAACAAAAAGGTAGCAATTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAATGGCAGATAAGATCAAAAGAACAACAAAAAGGTAGCAATTAC  100

seq1  AGTGAAGGTGACTTTCCTACAGCTTGTCTTTGTGGGCTCATAATAAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGGTGACTTTCCTACAGCTTGTCTTTGTGGGCTCATAATAAAGTT  150

seq1  AGAAGAATCAACGAACTAGGTGGTTGCCATGGTATTGAGCGTTTGAGAAT  200
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCATCAACGAACTAGGTGGTTGCCATGGTATTGAGCGTTTGAGAAT  200

seq1  TACCATCAGGTCCCATACGACCAGATAGGATGAAAAGATCTGACTGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCAGGTCCCATACGACCAGATAGGATGAAAAGATCTGACTGGGAA  250

seq1  CGTCATAACTCAAGAGTCCATGATTCCTCTAAAACCTACTG-TCTTAGTC  299
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CGTCATAACTCAAGAGTCCATGATTCCTCTAAAACCTACTGTTCTTAGTC  300

seq1  AGGGCTCTCCTGCTGTGAGGAGACACCATGACCAGAACTCTTGCAAGAAA  349
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCTCCTGCTGTGAGGAGACACCATGACCAGAACTCTTGCAAGAAA  350

seq1  ACATGGGGGGGGGGGGGGG  368
      |||||||||||||||||||
seq2  ACATGGGGGGGGGGGGGGG  369