BAC Information

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BAC

Clone NameB6Ng01-290F16
Chromosome17 (Build37)
Map Location 11,456,477 - 11,585,674
singlet/doubletdoublet
Overlap genePark2
Upstream geneQk, LOC675815, Pacrg, LOC100041113
Downstream geneAgpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik, LOC625753, Plg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290F16.bB6Ng01-290F16.g
ACCGA087516GA087517
length1,1551,068
definitionB6Ng01-290F16.b B6Ng01-290F16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,456,477 - 11,457,641)(11,584,619 - 11,585,674)
sequence
gaattctcaacctgtgcccctttggaggtcacatatcagacatcctgtat
atcaaatatttacactaggattcataatattatcaaattactgttatgac
atagcaatgaaagtaatcctacaactgtattgggggcaggggggtcacca
catgagatactattaaagtacggcctcactggggaggatgagaagcactg
tgctaagggaggcttgtccactggccagtactcagctctgctctctccag
tgtctcttggttgcttagtgttctggatttttaaatagaaatgaatttgt
tgctttgaatcgcttggtagccacgggatccaaaaacagtttttcactga
tgttgcttgagattttccaagtgctgagaatcttcataaaagcttgacca
ttgccaccaaaagacataggctgggaaggaatgatgcaccaaatgccagc
tcttctgcatctactttttgtacagcattcaagcatgctgagtgaaggaa
ttcattagatgcatatgcatctattatttccaatttaggaaactaatgaa
ggcagaggtttgtttgtttgtatgttttttacagtgtagctgtcttcaga
cacaccagaagaaaatgtcagatcttattacagatggttgtgagccacca
tgtggttgctgggatttgaacttaggaccttcgggagaatagtcagtgct
cttaaccactgagccatctctccagaccaagcagaggtcttaaaatagtt
ttgatttttgttcacaatcttattttgtgcccaatataatattgctttaa
tataaagatatgttcaaccctgtgcagccagtagaccaacaagggatagt
aggctaacttgaaaattgcaaattttaagccgggcggtggtggcacacgc
ctttaatcccagcacttggggaggcagaggcaggcagatttctgagttcg
aggccagccctggtctacaaagtgaattccaggacagccaggacaggaca
gggcctacacagagaaaccctgtctgaaaacaataaataataaaaaaaaa
aaccgagaaggaaaatgcaatttactgtaatggagtcatggttacagtac
atggcatgaattcgggtctgaacctccagggtctcacgaggccagtttta
agggg

gaattcagaacgagaagcagccctccccggtcacccttcagcaaatccca
cggctgacagacacatcatccttgaacagaggctcagacaaacagtcaca
gaaaaacataatcaccagacatttcaatttacctggcttaaacagactgt
taaagtctgctccaaggaagataatttgattagcacactgtaggccagtc
aaggacctggtggtttgtgattgatgtggttgaaaggtttctgagcaatc
cactgatcaagtatgtacacaacccctgcctcagacccccagatcttact
aggttagtccaagatactctttcgatcgtcaatcaattcctgcattgtga
ttctggcagcacacagatctccagttaaaggagctattgccaagatgtat
gcaagacaaagaaggtggttctaacccctgccctggtgttgtctactgta
acctcttccacctgccacaggtcagttaggtaaccattcctggtgcctgc
actcagagcacagggtgttcatccatcctgtattattgaagctacccatt
cagattgagagcatatggtgcctcatcatttcataagccgctccaggttc
tgggcttaaacaaacagccctcatgagaggtacttgcattatagccaggt
tagaagacaaggcagaccagtctatcttcataagtgaagcctagagagat
tcacacaggtactgaagtagtgatgaggaatggtgaagatgcaggagctt
tgagtagtgtgatcatgggttgagatgccagggatacttggagacaaaac
tgcatctgaccaaaaagatcagagactggcagactcatggggagtgttaa
tcagaatacatattatgtggcggtgaaggattttgggtgctgcatgaggt
tcctatttacatgggatagaggaacagagttgtagatcaatgatggatgt
tttatcaaacttgcctagggtagctgggagaaataccacataaatgtaca
ttagctaatgggaaaggcagctataacttctacatgacgtaatcgtactt
ttcattcacaaaaagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_11456477_11457641
seq2: B6Ng01-290F16.b_46_1200

seq1  GAATTCTCAACCTGTGCCCCTTTGGAGGTCACATATCAGACATCCTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACCTGTGCCCCTTTGGAGGTCACATATCAGACATCCTGTAT  50

seq1  ATCAAATATTTACACTAGGATTCATAATATTATCAAATTACTGTTATGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATATTTACACTAGGATTCATAATATTATCAAATTACTGTTATGAC  100

seq1  ATAGCAATGAAAGTAATCCTACAACTGTATTGGGGGCAGGGGGGTCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAATGAAAGTAATCCTACAACTGTATTGGGGGCAGGGGGGTCACCA  150

seq1  CATGAGATACTATTAAAGTACGGCCTCACTGGGGAGGATGAGAAGCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGATACTATTAAAGTACGGCCTCACTGGGGAGGATGAGAAGCACTG  200

seq1  TGCTAAGGGAGGCTTGTCCACTGGCCAGTACTCAGCTCTGCTCTCTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGGGAGGCTTGTCCACTGGCCAGTACTCAGCTCTGCTCTCTCCAG  250

seq1  TGTCTCTTGGTTGCTTAGTGTTCTGGATTTTTAAATAGAAATGAATTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTGGTTGCTTAGTGTTCTGGATTTTTAAATAGAAATGAATTTGT  300

seq1  TGCTTTGAATCGCTTGGTAGCCACGGGATCCAAAAACAGTTTTTCACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGAATCGCTTGGTAGCCACGGGATCCAAAAACAGTTTTTCACTGA  350

seq1  TGTTGCTTGAGATTTTCCAAGTGCTGAGAATCTTCATAAAAGCTTGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTTGAGATTTTCCAAGTGCTGAGAATCTTCATAAAAGCTTGACCA  400

seq1  TTGCCACCAAAAGACATAGGCTGGGAAGGAATGATGCACCAAATGCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACCAAAAGACATAGGCTGGGAAGGAATGATGCACCAAATGCCAGC  450

seq1  TCTTCTGCATCTACTTTTTGTACAGCATTCAAGCATGCTGAGTGAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGCATCTACTTTTTGTACAGCATTCAAGCATGCTGAGTGAAGGAA  500

seq1  TTCATTAGATGCATATGCATCTATTATTTCCAATTTAGGAAACTAATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAGATGCATATGCATCTATTATTTCCAATTTAGGAAACTAATGAA  550

seq1  GGCAGAGGTTTGTTTGTTTGTATGTTTTTTACAGTGTAGCTGTCTTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGTTTGTTTGTTTGTATGTTTTTTACAGTGTAGCTGTCTTCAGA  600

seq1  CACACCAGAAGAAAATGTCAGATCTTATTACAGATGGTTGTGAGCCACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGAAGAAAATGTCAGATCTTATTACAGATGGTTGTGAGCCACCA  650

seq1  TGTGGTTGCTGGGATTTGAACTTAGGACCTTCGGGAGAATAGTCAGTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGCTGGGATTTGAACTTAGGACCTTCGGGAGAATAGTCAGTGCT  700

seq1  CTTAACCACTGAGCCATCTCTCCAGACCAAGCAGAGGTCTTAAAATAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCACTGAGCCATCTCTCCAGACCAAGCAGAGGTCTTAAAATAGTT  750

seq1  TTGATTTTTGTTCACAATCTTATTTTGTGCCCAATATAATATTGCTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTTGTTCACAATCTTATTTTGTGCCCAATATAATATTGCTTTAA  800

seq1  TATAAAGATATGTTCAACCCTGTGCAGCCAGTAGACCAACAA-GGATAGT  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TATAAAGATATGTTCAACCCTGTGCAGCCAGTAGACCAACAAGGGATAGT  850

seq1  AGGCTAACTTGAAAATTGCAAATTTTAAGCCGGGCGGTGGTGGCACACGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAACTTGAAAATTGCAAATTTTAAGCCGGGCGGTGGTGGCACACGC  900

seq1  CTTTAATCCCAGCACTT-GGGAGGCAGAGGCAGGCAGATTTCTGAGTTCG  948
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCACTTGGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCG  950

seq1  AGGCCAG-CCTGGTCTACAAAGTGAATTCCAGGACAGCCAGGACAGGACA  997
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCCTGGTCTACAAAGTGAATTCCAGGACAGCCAGGACAGGACA  1000

seq1  GGG-CTACACAGAGAAACCCTGTCTTGAAAAACCAAAAAAAAAAAAAAAA  1046
      ||| |||||||||||||||||||||          |||| || ||| || 
seq2  GGGCCTACACAGAGAAACCCTGTCT---------GAAAACAATAAATAAT  1041

seq1  AAAAAAAAAAACGAAGAAGAAAAATGCAAATTTTACTGTAAAATGAGTCA  1096
      ||||||||||||  ||||| |||||||||  |||||||| ||  ||||||
seq2  AAAAAAAAAAACCGAGAAGGAAAATGCAA--TTTACTGT-AATGGAGTCA  1088

seq1  TGGTTTACCAGTACATGCCAATGAATTCTGGGGTCTGA--CTCGCAGGTC  1144
      |||||   ||||||||| | ||||||||  ||||||||  |||   ||||
seq2  TGGTT--ACAGTACATGGC-ATGAATTC--GGGTCTGAACCTCCAGGGTC  1133

seq1  TCACGAGGCCAGTTTTAGGGG-  1165
      ||||||||||||||||| ||| 
seq2  TCACGAGGCCAGTTTTAAGGGG  1155


seq1: chr17_11584619_11585674
seq2: B6Ng01-290F16.g_67_1134 (reverse)

seq1  TTAC-TTTTGTG-ATGGAAAGTAGGTTTACGTCATGGTG-AGTTATAGCT  47
      |||| ||||||| ||| |||||| | ||||||||||  | ||||||||||
seq2  TTACTTTTTGTGAATGAAAAGTACGATTACGTCATGTAGAAGTTATAGCT  50

seq1  G-CTTTCCCA-TAGCT-ATTTACATTTATGT-GTATTTCT-CCAGCTACC  92
      | |||||||| ||||| || ||||||||||| |||||||| |||||||||
seq2  GCCTTTCCCATTAGCTAATGTACATTTATGTGGTATTTCTCCCAGCTACC  100

seq1  CTAGGC-AGTTTGATAAAACATCCATCATTGATCTACAACTCTGTT-CTC  140
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  CTAGGCAAGTTTGATAAAACATCCATCATTGATCTACAACTCTGTTCCTC  150

seq1  TATCCCATGT-AATAGGAACTTCATGCAGCACCCAAAATCCTTCACCGCC  189
      |||||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  TATCCCATGTAAATAGGAACCTCATGCAGCACCCAAAATCCTTCACCGCC  200

seq1  ACATAATATGTATTCTGATTAACACTCCCCATGAGTCTGCCAGTCTCTGA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATATGTATTCTGATTAACACTCCCCATGAGTCTGCCAGTCTCTGA  250

seq1  TCTTTTTGGTCAGATGCAGTTTTGTCTCCAAGTATCCCTGGCATCTCAA-  288
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTTTTTGGTCAGATGCAGTTTTGTCTCCAAGTATCCCTGGCATCTCAAC  300

seq1  CCATGATCACACTACTCAAAGCTCCTGCATCTTCACCATTCCTCATCACT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATCACACTACTCAAAGCTCCTGCATCTTCACCATTCCTCATCACT  350

seq1  ACTTCAGTACCTGTGTGAATCTCTCTAGGCTTCACTTATGAAGATAGACT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGTACCTGTGTGAATCTCTCTAGGCTTCACTTATGAAGATAGACT  400

seq1  GGTCTGCCTTGTCTTCTAACCTGGCTATAATGCAAGTACCTCTCATGAGG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCCTTGTCTTCTAACCTGGCTATAATGCAAGTACCTCTCATGAGG  450

seq1  GCTGTTTGTTTAAGCCCAGAACCTGGAGCGGCTTATGAAATGATGAGGCA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTGTTTAAGCCCAGAACCTGGAGCGGCTTATGAAATGATGAGGCA  500

seq1  CCATATGCTCTCAATCTGAATGGGTAGCTTCAATAATACAGGATGGATGA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGCTCTCAATCTGAATGGGTAGCTTCAATAATACAGGATGGATGA  550

seq1  ACACCCTGTGCTCTGAGTGCAGGCACCAGGAATGGTTACCTAACTGACCT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTGTGCTCTGAGTGCAGGCACCAGGAATGGTTACCTAACTGACCT  600

seq1  GTGGCAGGTGGAAGAGGTTACAGTAGACAACACCAGGGCAGGGGTTAGAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGTGGAAGAGGTTACAGTAGACAACACCAGGGCAGGGGTTAGAA  650

seq1  CCACCTTCTTTGTCTTGCATACATCTTGGCAATAGCTCCTTTAACTGGAG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTCTTTGTCTTGCATACATCTTGGCAATAGCTCCTTTAACTGGAG  700

seq1  ATCTGTGTGCTGCCAGAATCACAATGCAGGAATTGATTGACGATCGAAAG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTGCTGCCAGAATCACAATGCAGGAATTGATTGACGATCGAAAG  750

seq1  AGTATCTTGGACTAACCTAGTAAGATCTGGGGGTCTGAGGCAGGGGTTGT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTTGGACTAACCTAGTAAGATCTGGGGGTCTGAGGCAGGGGTTGT  800

seq1  GTACATACTTGATCAGTGGATTGCTCAGAAACCTTTCAACCACATCAATC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATACTTGATCAGTGGATTGCTCAGAAACCTTTCAACCACATCAATC  850

seq1  ACAAACCACCAGGTCCTTGACTGGCCTACAGTGTGCTAATCAAATTATCT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCACCAGGTCCTTGACTGGCCTACAGTGTGCTAATCAAATTATCT  900

seq1  TCCTTGGAGCAGACTTTAACAGTCTGTTTAAGCCAGGTAAATTGAAATGT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGAGCAGACTTTAACAGTCTGTTTAAGCCAGGTAAATTGAAATGT  950

seq1  CTGGTGATTATGTTTTTCTGTGACTGTTTGTCTGAGCCTCTGTTCAAGGA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGATTATGTTTTTCTGTGACTGTTTGTCTGAGCCTCTGTTCAAGGA  1000

seq1  TGATGTGTCTGTCAGCCGTGGGATTTGCTGAAGGGTGACCGGGGAGGGCT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGTCTGTCAGCCGTGGGATTTGCTGAAGGGTGACCGGGGAGGGCT  1050

seq1  GCTTCTCGTTCTGAATTC  1056
      ||||||||||||||||||
seq2  GCTTCTCGTTCTGAATTC  1068


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