BAC Information

Click to search

BAC

Clone NameB6Ng01-290H20
Chromosome17 (Build37)
Map Location 37,638,079 - 37,748,963
singlet/doubletdoublet
Overlap geneOlfr111, Olfr112, Olfr113, Olfr114, Olfr115
Upstream geneH2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110
Downstream geneOlfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136, LOC626985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290H20.bB6Ng01-290H20.g
ACCGA087620GA087621
length9341,141
definitionB6Ng01-290H20.b B6Ng01-290H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,638,079 - 37,638,890)(37,747,829 - 37,748,963)
sequence
gaattcccaaaagaaggagatatataggtttcagaaatggagttgtcctc
ttcctgggacattttagcaaaagagaaggaaaaatggatatcagctattt
cagaggtctcctagggacaggaggaaattgggaaacatcctgcttcctct
ctggctcctatggagatattcttcattctggttagaatatctgggttcct
ttgagacatcaaattctctttcctctctgtctattgtctgtccttggtac
accaatctgtccatacgtctatcaatatatgtttgtttttgttttgttgt
tcaaatgattgttctgtatttcattttgaaaaaaagaaatggttaaaact
ttatctgctggctgtctatcctttgatttagtttaacttgtttaaaaggt
agactcaatttgcacagcagaaactgagaagttacactgcactgtggccg
ggagtccagaacatctggaaaagccctgctagaataattattttctgagg
aaaaacagcttgattgtaagcctaaaatctaaataattataaaggatctt
gagattacactttttctggagctattttgtgatccttttatcagctaatg
atagcttgtgattatctacacaagcagctattaaaggggccaacagattt
ttgcttgtaacaaaaaagttagctttaaaattggtaattcaaggttggag
tcattcttggcatgaaccaacccaggaaaacagtttccttaaaggtactt
tctaaatttgggataataattttatgtaatttattaattctagaaaacta
gacttataaaggatagaaatttaaaacaatttctcttttaatggaggtat
taaagggctacctctgtcatacatttcatatacaagacctggcagcaaaa
cttttgtacctgaaaatttaatgctcatggtaat
gaattcagcatgctgctgccacaagtcttggaactcgttttctcatgttg
gctctaagaccacttcaattacaatccaattgtcatcatgtcaggtactt
ggatgtaagttcattcttgagaaagaggtgttaggaagctagagtgagtt
tttcctgtcattggagagatgccatcacttggaaaaatgccataacattg
aaatgggtgacctgaaattttattctacaactacatttgtaagcacaaaa
attttaagtaaacttgaaattgtgtgatgatatttcatttgcttatgttt
tctagaactcacttaatggaacaaaaaatcatagaggaagctcacagtcc
tttaaattctcatcagcctacaaacaccaacatacatattgcaaggggaa
aatgatgagggtttttaatccatccaatatcaaaaggaccataaactaaa
gcatgacttctatctgaaacataaatgactttatgcagtctcttattgta
tattcgccattttcctccttatcttaaaccatctctagaaatcaccacct
gtctttgcagttgtctttccttctggtaagagctaatacactccttaaaa
tgaaataggatatctaaattgagcatgtcatgtgagtattccccttacac
acgtattttcttattgatttcaataattactgcattgtatttaaaagcat
ttttatacttgattctacaataaccaatatcctcttgctataatgacagc
attgtattctaagagagtagctgtttaccgtggacaaccaaaccatattt
taattacaagtatatttcctatgaatgcctatttcatttgctaacatggt
accatgttcaagatatacataaccaacctaatctatgttcaaaaactcct
tccacagtccaaaactgactgactattgatgacttaaagaaaagcaatgg
gtttcacctgtgttgggtgggacagtgtttttttcataaggcagaccaaa
accacattcttgaaaggacccagtgatgggcacttgtacattctctggta
tctaccttctttatgattgatagtgggtggaagatgtatgggaagataag
gaaaaatgtgggtcctgttagtttctcacaggtatagatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_37638079_37638890
seq2: B6Ng01-290H20.b_148_980

seq1  AGAGGTCTCCTAGGGACAGGAGGAAATTGGGAAACATCCTGCTTCCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCTCCTAGGGACAGGAGGAAATTGGGAAACATCCTGCTTCCTCTC  50

seq1  TGGCTCCTATGGAGATATTCTTCATTCTGGTTAGAATATCTGGGTTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCTATGGAGATATTCTTCATTCTGGTTAGAATATCTGGGTTCCTT  100

seq1  TGAGACATCAAATTCTCTTTCCTCTCTGTCTATTGTCTGTCCTTGGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATCAAATTCTCTTTCCTCTCTGTCTATTGTCTGTCCTTGGTACA  150

seq1  CCAATCTGTCCATACGTCTATCAATATATGTTTGTTTTTGTTTTGTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTGTCCATACGTCTATCAATATATGTTTGTTTTTGTTTTGTTGTT  200

seq1  CAAATGATTGTTCTGTATTTCATTTTGAAAAAAAGAAATGGTTAAAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGATTGTTCTGTATTTCATTTTGAAAAAAAGAAATGGTTAAAACTT  250

seq1  TATCTGCTGGCTGTCTATCCTTTGATTTAGTTTAACTTGTTTAAAAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCTGGCTGTCTATCCTTTGATTTAGTTTAACTTGTTTAAAAGGTA  300

seq1  GACTCAATTTGCACAGCAGAAACTGAGAAGTTACACTGCACTGTGGCCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAATTTGCACAGCAGAAACTGAGAAGTTACACTGCACTGTGGCCGG  350

seq1  GAGTCCAGAACATCTGGAAAAGCCCTGCTAGAATAATTATTTTCTGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAGAACATCTGGAAAAGCCCTGCTAGAATAATTATTTTCTGAGGA  400

seq1  AAAACAGCTTGATTGTAAGCCTAAAATCTAAATAATTAT-AAGGATCTTG  449
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAACAGCTTGATTGTAAGCCTAAAATCTAAATAATTATAAAGGATCTTG  450

seq1  AGATTACACTTTTTCTGGAGCTA-TTTGTGATCC-TTTATCAGCTAATGA  497
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  AGATTACACTTTTTCTGGAGCTATTTTGTGATCCTTTTATCAGCTAATGA  500

seq1  TAGCTTGTGATTATCTACACAAGCAGCTATTAAAGGGGCCAACAGATTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGTGATTATCTACACAAGCAGCTATTAAAGGGGCCAACAGATTTT  550

seq1  TGCTTGTAAC-AAAAAGTTAGC-TTAAAATTGGTAATTCAAGGTTGGAGT  595
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  TGCTTGTAACAAAAAAGTTAGCTTTAAAATTGGTAATTCAAGGTTGGAGT  600

seq1  CATTCTTGGCATGAACCAACCCAGGAAAACAG-TTCCTTAAAGGTAC-TT  643
      |||||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  CATTCTTGGCATGAACCAACCCAGGAAAACAGTTTCCTTAAAGGTACTTT  650

seq1  CTAAA-TTGGGATAAT-ATTTTATGTAA-TTATT-ATTCTAG-AAACTAG  688
      ||||| |||||||||| ||||||||||| ||||| ||||||| |||||||
seq2  CTAAATTTGGGATAATAATTTTATGTAATTTATTAATTCTAGAAAACTAG  700

seq1  ACTTATAAAGGATAG-AATTTAAAACAA-TTCTC-TTTAAT-GAGGTATT  734
      ||||||||||||||| |||||||||||| ||||| |||||| ||||||||
seq2  ACTTATAAAGGATAGAAATTTAAAACAATTTCTCTTTTAATGGAGGTATT  750

seq1  AAA-GGCTA-CTCTGTCATACA-TTCATATACAAGAACTGGCAGCAAAAC  781
      ||| ||||| |||||||||||| ||||||||||||| |||||||||||||
seq2  AAAGGGCTACCTCTGTCATACATTTCATATACAAGACCTGGCAGCAAAAC  800

seq1  TTTGTAACGTGAAA--TTAATGCTCATGGTATT  812
      |||   || |||||  ||||||||||||||| |
seq2  TTTTGTACCTGAAAATTTAATGCTCATGGTAAT  833

seq1: chr17_37747829_37748963
seq2: B6Ng01-290H20.g_64_1204 (reverse)

seq1  TCATCTATACTTGTTGAGAAACTTAACAGAGAACACATTTTT-CTTATCT  49
      |||||||||| || |||||||| ||||||    ||||||||| |||||||
seq2  TCATCTATACCTG-TGAGAAAC-TAACAGGACCCACATTTTTCCTTATCT  48

seq1  --CCATACATCT----CACACTATCAATTCATAAAGAA-GTAGATACAGG  92
        ||||||||||    | ||||||||| |||||||||| ||||||||  |
seq2  TCCCATACATCTTCCACCCACTATCAA-TCATAAAGAAGGTAGATACCAG  97

seq1  AGAATGTACAAGTGGCCCATCACTGGGTTCTTTCAAGGAATGTGG-TTTG  141
      ||||||||||||| |||||||||||||| ||||||| |||||||| ||||
seq2  AGAATGTACAAGT-GCCCATCACTGGGTCCTTTCAA-GAATGTGGTTTTG  145

seq1  GTCTGCCTTATG-AAAAAACACTGTCCCA-CCAACACAGGTGAAACCCAT  189
      |||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  GTCTGCCTTATGAAAAAAACACTGTCCCACCCAACACAGGTGAAACCCAT  195

seq1  TGCTTTTCTTTAAGTCATCAATAGTCAGTCAGTTTTGGACTGTGGAAGGA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCTTTAAGTCATCAATAGTCAGTCAGTTTTGGACTGTGGAAGGA  245

seq1  GTTTTTGAACATAGATTAGGTTGGTTATGTATATCTTGAACATGGTACCA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGAACATAGATTAGGTTGGTTATGTATATCTTGAACATGGTACCA  295

seq1  TGTTAGCAAATGAAATAGGCATTCATAGGAAATATACTTGTAATTAAAAT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCAAATGAAATAGGCATTCATAGGAAATATACTTGTAATTAAAAT  345

seq1  ATGGTTTGGTTGTCCACGGTAAACAGCTACTCTCTTAGAATACAATGCTG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTGGTTGTCCACGGTAAACAGCTACTCTCTTAGAATACAATGCTG  395

seq1  TCATTATAGCAAGAGGATATTGGTTATTGTAGAATCAAGTATAAAAATGC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATAGCAAGAGGATATTGGTTATTGTAGAATCAAGTATAAAAATGC  445

seq1  TTTTAAATACAATGCAGTAATTATTGAAATCAATAAGAAAATACGTGTGT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATACAATGCAGTAATTATTGAAATCAATAAGAAAATACGTGTGT  495

seq1  AAGGGGAATACTCACATGACATGCTCAATTTAGATATCCTATTTCATTTT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAATACTCACATGACATGCTCAATTTAGATATCCTATTTCATTTT  545

seq1  AAGGAGTGTATTAGCTCTTACCAGAAGGAAAGACAACTGCAAAGACAGGT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTGTATTAGCTCTTACCAGAAGGAAAGACAACTGCAAAGACAGGT  595

seq1  GGTGATTTCTAGAGATGGTTTAAGATAAGGAGGAAAATGGCGAATATACA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTTCTAGAGATGGTTTAAGATAAGGAGGAAAATGGCGAATATACA  645

seq1  ATAAGAGACTGCATAAAGTCATTTATGTTTCAGATAGAAGTCATGCTTTA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGACTGCATAAAGTCATTTATGTTTCAGATAGAAGTCATGCTTTA  695

seq1  GTTTATGGTCCTTTTGATATTGGATGGATTAAAAACCCTCATCATTTTCC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGGTCCTTTTGATATTGGATGGATTAAAAACCCTCATCATTTTCC  745

seq1  CCTTGCAATATGTATGTTGGTGTTTGTAGGCTGATGAGAATTTAAAGGAC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAATATGTATGTTGGTGTTTGTAGGCTGATGAGAATTTAAAGGAC  795

seq1  TGTGAGCTTCCTCTATGATTTTTTGTTCCATTAAGTGAGTTCTAGAAAAC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTTCCTCTATGATTTTTTGTTCCATTAAGTGAGTTCTAGAAAAC  845

seq1  ATAAGCAAATGAAATATCATCACACAATTTCAAGTTTACTTAAAATTTTT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAAATGAAATATCATCACACAATTTCAAGTTTACTTAAAATTTTT  895

seq1  GTGCTTACAAATGTAGTTGTAGAATAAAATTTCAGGTCACCCATTTCAAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTACAAATGTAGTTGTAGAATAAAATTTCAGGTCACCCATTTCAAT  945

seq1  GTTATGGCATTTTTCCAAGTGATGGCATCTCTCCAATGACAGGAAAAACT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGCATTTTTCCAAGTGATGGCATCTCTCCAATGACAGGAAAAACT  995

seq1  CACTCTAGCTTCCTAACACCTCTTTCTCAAGAATGAACTTACATCCAAGT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTAGCTTCCTAACACCTCTTTCTCAAGAATGAACTTACATCCAAGT  1045

seq1  ACCTGACATGATGACAATTGGATTGTAATTGAAGTGGTCTTAGAGCCAAC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACATGATGACAATTGGATTGTAATTGAAGTGGTCTTAGAGCCAAC  1095

seq1  ATGAGAAAACGAGTTCCAAGACTTGTGGCAGCAGCATGCTGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAAACGAGTTCCAAGACTTGTGGCAGCAGCATGCTGAATTC  1141