BAC Information

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BAC

Clone NameB6Ng01-290N02
Chromosome17 (Build37)
Map Location 62,259,485 - 62,260,638
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433129, EG620725, LOC100043560
Downstream geneEfna5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290N02.bB6Ng01-290N02.g
ACCGA087864GA087865
length1,2121,143
definitionB6Ng01-290N02.b B6Ng01-290N02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgaactgaggaatactgaatgcccgagaagcacctgaaaaaatg
ctcaacatccttaatcatcagagaaatgtaaataaaaacaaccctgagat
ttcacctcacaccagtcaaaatggttaagattaaaaattcaggtaacagc
agatgctgtcaaggatgtggagaaagaggaacactcctccattgctggtg
agattgtaagttggtacaactactctggaaatcaatttggcgtttcctca
gaaaattgaacatagtactactggaagatccagcaatacttctcttgggc
atatacccagaagaagctccaacttgtaataaggacacatgctccactat
gttcatagcagctgtatttataatagctataagttggaaaaaacccaaat
gtccctcaacagaggaatggatacagaaaatgtggtatatttacacaata
gagtactactcagctattaaaacaacgaatttatgaaattcttaggtaaa
tagatgaatctggaggatatcatcctgagtgaggtaacccaatcacaaaa
gaacatacatgatatgtactcactgattaagtggatattagcccagaaac
ctagaatattcaagatactatttgcaaaacacatgaaacacaagaaggag
gaagaccaaagtgtggatacttcattccttcttagaatggaaaacaaaat
acccatggaaggagttacagagacgaagttctaagctgaaacagaaggaa
ggaccatacagagactgccccacctggggatccataccataaacaaccac
caaacccagacactattgcatatgccagcaatatttgctgccaggaccgt
aatatagctttctcttgtgaggctatgctagtgcttggcaaatacagaag
tggatgctcacagtcatctattgaatgaaacacagggcccccaatgaaag
gagctagagaaagtatccaaggagctaaaggggtatgcaaccctatagga
ggacacaatatgaactaacagtactcccagagctgtgtctctagttgcat
atgtagcagagatggcgtagttggcaatccatgggagggagaggccttgg
tttttgtttaagatttatatggcccaagttaatattaatggtatgccaga
gtcaggtaagccaaggatgctggattggggaaacaaggatgttgtgttgt
cagcaagcctat
gaattctatccttgcttaagcctagggttacttggttttcacacacacac
acacacacacacacacacacacacacacacacacacacattcagctctga
gacagatgaagaagttatgacttagattatttgggaggcttccctacaat
agtagggaatccttaatggatctgtgaatcctgtaacaactgattgactt
tccaacttaacaatgttattgtttaaattgtaatttgctttcagatttga
gtctttataaattatccttttggttacaaattatattaaatcagatcatt
atttgataaaagacaatgaagtggataaaatttattaaattgtatgtctg
aaatatttaaatctgaattttattttagttaacattaaatctaagcatac
atgcatataggactgattaaatttctaaagaaatgtacagcaacaaaggc
aggaatttttgttaatttcttcagtaaaattgctagtgactaatagtcac
tggatgacatgcctacttccagtaaaattatgtggccaaatacagtatgt
tcataaaagctttacctcatagaatacaattctctataaacatgtctaat
attattgactaggaaaattgaaacaataaaacacacttatttttcaatat
atcttataaatatataaaacataaaattatgtatattttatgcatgcata
tgaaaaatatatgctgtctatatataattatacatacacatataagggaa
catagaatacagatagagcatatacgattataaaaggggatgtgttctgg
ctgtggacatatgaatatctgcatactagaggtgaagttcaccactcaat
ttctcagttctgaaagctggaagcttcacaataatggatccccaatgcag
tcctccaagacagaaagctcgcaagcttcctaaaatggaatacttctaca
tgacatgtccacagatgatgtgtagcaatagaagtacttgtttcagaagc
tgagcttttgtatccaggctaactggctctctgctacttttttttttttt
tttggtcgggattctagctgactgccatagttacatacccagttgagttg
aattcttaccctactatgaatctaactgtcatcttctttggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_62259485_62260638
seq2: B6Ng01-290N02.g_67_1209

seq1  GAATTCTATCCTTGCTTAAGCCTAGGGTTACTTGGTTTTCACACACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCCTTGCTTAAGCCTAGGGTTACTTGGTTTTCACACACACAC  50

seq1  ACACACACACACACACACACACACACACACACACACACATTCAGCTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACATTCAGCTCTGA  100

seq1  GACAGATGAAGAAGTTATGACTTAGATTATTTGGGAGGCTTCCCTACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATGAAGAAGTTATGACTTAGATTATTTGGGAGGCTTCCCTACAAT  150

seq1  AGTAGGGAATCCTTAATGGATCTGTGAATCCTGTAACAACTGATTGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGAATCCTTAATGGATCTGTGAATCCTGTAACAACTGATTGACTT  200

seq1  TCCAACTTAACAATGTTATTGTTTAAATTGTAATTTGCTTTCAGATTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTTAACAATGTTATTGTTTAAATTGTAATTTGCTTTCAGATTTGA  250

seq1  GTCTTTATAAATTATCCTTTTGGTTACAAATTATATTAAATCAGATCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATAAATTATCCTTTTGGTTACAAATTATATTAAATCAGATCATT  300

seq1  ATTTGATAAAAGACAATGAAGTGGATAAAATTTATTAAATTGTATGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATAAAAGACAATGAAGTGGATAAAATTTATTAAATTGTATGTCTG  350

seq1  AAATATTTAAATCTGAATTTTATTTTAGTTAACATTAAATCTAAGCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTAAATCTGAATTTTATTTTAGTTAACATTAAATCTAAGCATAC  400

seq1  ATGCATATAGGACTGATTAAATTTCTAAAGAAATGTACAGCAACAAAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATAGGACTGATTAAATTTCTAAAGAAATGTACAGCAACAAAGGC  450

seq1  AGGAATTTTTGTTAATTTCTTCAGTAAAATTGCTAGTGACTAATAGTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTTTGTTAATTTCTTCAGTAAAATTGCTAGTGACTAATAGTCAC  500

seq1  TGGATGACATGCCTACTTCCAGTAAAATTATGTGGCCAAATACAGTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGACATGCCTACTTCCAGTAAAATTATGTGGCCAAATACAGTATGT  550

seq1  TCATAAAAGCTTTACCTCATAGAATACAATTCTCTATAAACATGTCTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAAGCTTTACCTCATAGAATACAATTCTCTATAAACATGTCTAAT  600

seq1  ATTATTGACTAGGAAAATTGAAACAATAAAACACACTTATTTTTCAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGACTAGGAAAATTGAAACAATAAAACACACTTATTTTTCAATAT  650

seq1  ATCTTATAAATATATAAAACATAAAATTATGTATATTTTATGCATGCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATAAATATATAAAACATAAAATTATGTATATTTTATGCATGCATA  700

seq1  TGAAAAATATATGCTGTCTATATATAATTATACATACACATATAAGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATATATGCTGTCTATATATAATTATACATACACATATAAGGGAA  750

seq1  CATAGAATACAGATAGAGCATATACGATTATAAAAGGGGATGTGTTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAATACAGATAGAGCATATACGATTATAAAAGGGGATGTGTTCTGG  800

seq1  CTGTGGACATATGAATATCTGCATACTAGAGGTGAAGTTCACCACTCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGACATATGAATATCTGCATACTAGAGGTGAAGTTCACCACTCAAT  850

seq1  TTCTCAGTTCTGAAAGCTGGAAGCTTCACAATAATGGATCCCCAATGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTTCTGAAAGCTGGAAGCTTCACAATAATGGATCCCCAATGCAG  900

seq1  TCCTCCAAGACAGAAAGCTCGCAAGCTTCCTAAAATGGAATACTTCTACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAAGACAGAAAGCTCGCAAGCTTCCTAAAATGGAATACTTCTACA  950

seq1  TGACATGTCCACAGATGATGGTGGTAGCAATAGAAGTACTTGTTTCAGAA  1000
      ||||||||||||||||||||   ||||||||||||||||||||||||| |
seq2  TGACATGTCCACAGATGATG--TGTAGCAATAGAAGTACTTGTTTCAG-A  997

seq1  AGCTGGAGCTTTTGTATCCAGGCTAACTTGCTCTCTCCTTACTTTTTTTT  1050
      |||| ||||||||||||||||||||||| ||||||| | |||||||||||
seq2  AGCT-GAGCTTTTGTATCCAGGCTAACTGGCTCTCTGC-TACTTTTTTTT  1045

seq1  TTTTTTTTGGTTTGGGGATTCTAGCTGATTG-CATAG-TACTACCCCAGT  1098
      ||||||||||  | |||||||||||||| || ||||| |||   ||||||
seq2  TTTTTTTTGG--TCGGGATTCTAGCTGACTGCCATAGTTACATACCCAGT  1093

seq1  TGAGGT-AGATCTTACCTCACCATAATTGATTTCTTAAATGTCAATCTTC  1147
      |||| | |  |||||||  || || | |       ||| |||| ||||||
seq2  TGAGTTGAATTCTTACCCTACTATGAAT------CTAACTGTC-ATCTTC  1136

seq1  TTTGGAA  1154
      |||||||
seq2  TTTGGAA  1143