BAC Information

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BAC

Clone NameB6Ng01-294H03
Chromosome17 (Build37)
Map Location 4,614,481 - 4,735,816
singlet/doubletdoublet
Overlap genenone
Upstream geneNox3, 4930470H14Rik
Downstream genePpia-ps17_26.1, Arid1b, 5730437N04Rik, Ldhal6b, LOC100040282, LOC666919, LOC100040312, Zdhhc14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294H03.bB6Ng01-294H03.g
ACCGA090568GA090569
length1,1311,077
definitionB6Ng01-294H03.b B6Ng01-294H03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,614,481 - 4,615,609)(4,734,739 - 4,735,816)
sequence
gaattccaatgctacaaaaactgtactacactaataagacacaggcatac
tgtatttagaggtatgctatttgtataaatagtcatttcaaaaagtaatg
acttccttgtatctgaaatagatttatttagagaatatcaagtgttttaa
aattgagaaaattgttatgctaaatattgaaatgatgcttaatcatactg
cttttccatcattaaagaaagttaccattttagcacatctgcttactcat
tttaccttgacacaatataatgaacacaagattgcacaacatacttttta
agcttacataatattgtaaagaatattatattttctctgtatgccattta
aatgttaatatgttttcagttcagtctaacctctgtaatttgcacgctca
ctgaagaaatactagaaaaggaagggaaaaaaataaaagaggaaaaaaga
attctgcatcatctatctataccccaaaataactcctattaacattcagg
ttatttataaatttgtatagaaaaatacatttttactaaagttttatatg
tcctttaacaacaaatatagtagcagtagccagaaacgtccataaaatga
agatataaaggaacaaatgagatgaaatttctaagtttgaaaaatacaat
atatgaaataaaaatagtcacaggccacgtctttgaactgcttttctgtt
ctggtgatgaaatagtcagaagcagcttaaagaatagtttgttttagttt
agtgctagaggactagatatccagaatgatgaggaaggcatggctatagg
agcggaacactgtaagatcacatcttaacctcacacagaagcactaccag
gctggatgaggctggagcatctcaaagcccacttctggtgatcatcccct
ccagcaagactccctggaccacaggcaaactaactgagaactaagttgtt
taggtacttgagccaaaggggttcattctttttttttttatttaacccaa
atagataacattgcagttgatactatagaaaataaactattgaatttaaa
atcatatcaattacgttcacaaaacatagttaatagccacaaacattctg
ttgattttttatcgtcaaatacaatcatacg

gaattcctgctggttgtgtgggctagcatttctttctcttagaccttgtc
aagtgacaacaacacacaggtttggacaacagaggtgtggtatttgggga
tacaagagaaaccttgtcacccatctttgtgacaaatcttgccctcatct
tgtgcttttacagtctacatattctgtattaagtcaaggttctggaaggt
ctgtgtgtgtggataccacagccaatgtcccagaattctgcttccagttg
gctctgcagagagtcttagtctatgtggtcagctgggttctctggatttt
cccaggagactaagggctatggtgtacaggaactatgcttgggtgaggct
tgcctcatagctgcttcgggtgtgggaaatcacagctgtgtctaactgtg
aggctcagccaaacaactgccatttgcaggagttcagctgtgcctgtgtg
caaaaagccatcacagctgggcttgttgatgtggctgctccctcacagaa
ggaggaccagagatggtcattgtgctcttaagtatccagctaccccttcc
aaccagttgtttgtagtctgccttaactccaggaggccttggagtctggt
gctattatggggaggcaccatcatcatggtgggtgaagactttgcagtga
ggctgcattggggtctcccacagtcctcatgtatggtctgtaaataagct
cactgaacttactagtcttccgcgggggcctttgtggacttgaacttttg
gtttgtcactgagaccttagaaggagtgggggggagttgttgcttcatcc
accagggagaaatttttgaaaaaaaaatttttttttttaaaagtttaaat
ataaaactttttatattttaaatttagatgctgttggcctctgtcttttt
atttttccctagaatatctcgaaattaagcagcaagatctgcaccaaata
ggcagatgtgctctacacatccgttcttctcaccctggcccctgaggaca
atgtgagcagactgatccttagtttgtgcctccccaaccttcttgcctaa
taaaacatttgttcgatcttctgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_4614481_4615609
seq2: B6Ng01-294H03.b_46_1176

seq1  GAATTCCAATGCTACAAAAACTGTACTACACTAATAAGACACAGGCATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATGCTACAAAAACTGTACTACACTAATAAGACACAGGCATAC  50

seq1  TGTATTTAGAGGTATGCTATTTGTATAAATAGTCATTTCAAAAAGTAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTAGAGGTATGCTATTTGTATAAATAGTCATTTCAAAAAGTAATG  100

seq1  ACTTCCTTGTATCTGAAATAGATTTATTTAGAGAATATCAAGTGTTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTGTATCTGAAATAGATTTATTTAGAGAATATCAAGTGTTTTAA  150

seq1  AATTGAGAAAATTGTTATGCTAAATATTGAAATGATGCTTAATCATACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGAAAATTGTTATGCTAAATATTGAAATGATGCTTAATCATACTG  200

seq1  CTTTTCCATCATTAAAGAAAGTTACCATTTTAGCACATCTGCTTACTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCATCATTAAAGAAAGTTACCATTTTAGCACATCTGCTTACTCAT  250

seq1  TTTACCTTGACACAATATAATGAACACAAGATTGCACAACATACTTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTTGACACAATATAATGAACACAAGATTGCACAACATACTTTTTA  300

seq1  AGCTTACATAATATTGTAAAGAATATTATATTTTCTCTGTATGCCATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACATAATATTGTAAAGAATATTATATTTTCTCTGTATGCCATTTA  350

seq1  AATGTTAATATGTTTTCAGTTCAGTCTAACCTCTGTAATTTGCACGCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAATATGTTTTCAGTTCAGTCTAACCTCTGTAATTTGCACGCTCA  400

seq1  CTGAAGAAATACTAGAAAAGGAAGGGAAAAAAATAAAAGAGGAAAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAAATACTAGAAAAGGAAGGGAAAAAAATAAAAGAGGAAAAAAGA  450

seq1  ATTCTGCATCATCTATCTATACCCCAAAATAACTCCTATTAACATTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCATCATCTATCTATACCCCAAAATAACTCCTATTAACATTCAGG  500

seq1  TTATTTATAAATTTGTATAGAAAAATACATTTTTACTAAAGTTTTATATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATAAATTTGTATAGAAAAATACATTTTTACTAAAGTTTTATATG  550

seq1  TCCTTTAACAACAAATATAGTAGCAGTAGCCAGAAACGTCCATAAAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAACAACAAATATAGTAGCAGTAGCCAGAAACGTCCATAAAATGA  600

seq1  AGATATAAAGGAACAAATGAGATGAAATTTCTAAGTTTGAAAAATACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAAAGGAACAAATGAGATGAAATTTCTAAGTTTGAAAAATACAAT  650

seq1  ATATGAAATAAAAATAGTCACAGGCCACGTCTTTGAACTGCTTTTCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAATAAAAATAGTCACAGGCCACGTCTTTGAACTGCTTTTCTGTT  700

seq1  CTGGTGATGAAATAGTCAGAAGCAGCTTAAAGAATAGTTTGTTTTAGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGATGAAATAGTCAGAAGCAGCTTAAAGAATAGTTTGTTTTAGTTT  750

seq1  AGTGCTAGAGGACTAGATATCCAGAATGATGAGGAAGGCATGGCTATAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAGAGGACTAGATATCCAGAATGATGAGGAAGGCATGGCTATAGG  800

seq1  AGCGGAACACTGTAAGATCACATCTTAACCTCACACAGAAGCACTACCA-  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGCGGAACACTGTAAGATCACATCTTAACCTCACACAGAAGCACTACCAG  850

seq1  GCTGGATGAGGCTGGAGCATCTCAAAGCCCACTTCTGGTGATCATCCCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATGAGGCTGGAGCATCTCAAAGCCCACTTCTGGTGATCATCCCCT  900

seq1  CCAGCAAGACTCCCTGGACCACAGGCAAACTAACTGAGAACTAAGTTGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAGACTCCCTGGACCACAGGCAAACTAACTGAGAACTAAGTTGTT  950

seq1  TAGGTACTTGAGCCAAAGGGGTTCATTCTTTTTTTTTTTAATTTAAACCA  999
      ||||||||||||||||||||||||||||||||||||||||  || |||| 
seq2  TAGGTACTTGAGCCAAAGGGGTTCATTCTTTTTTTTTTTA--TTTAACCC  998

seq1  AAATAGATACAATTGCAGGTTTGATACTATAGAAAATAAACTA-TGAATT  1048
      |||||||||  |||||||  ||||||||||||||||||||||| ||||||
seq2  AAATAGATAACATTGCAG--TTGATACTATAGAAAATAAACTATTGAATT  1046

seq1  TAAAATCATATCAAATTAAGGTCACAAAACATAG-TAATAG-CACAAACA  1096
      |||||||||||| ||||| | ||||||||||||| |||||| ||||||||
seq2  TAAAATCATATC-AATTACGTTCACAAAACATAGTTAATAGCCACAAACA  1095

seq1  -TCTG-TGA-TTTTTATCGTC-AATACAAATCATACG  1129
       |||| ||| ||||||||||| ||||| |||||||||
seq2  TTCTGTTGATTTTTTATCGTCAAATAC-AATCATACG  1131


seq1: chr17_4734739_4735816
seq2: B6Ng01-294H03.g_68_1144 (reverse)

seq1  TACACAG-AGACCAAACAAATGTTTTA-TAGGCAGAGAAGGTTGGGGGAA  48
      ||||||| ||| | ||||||||||||| |||||| |||||||| ||||| 
seq2  TACACAGAAGATCGAACAAATGTTTTATTAGGCA-AGAAGGTT-GGGGAG  48

seq1  GCAC-AACTAAGGATCAGTCTTGGCTCACATTTGGTCCTCAGGGGCCCAG  97
      |||| ||||||||||||||||  |||||||||  ||||||||||| ||||
seq2  GCACAAACTAAGGATCAGTCT--GCTCACATT--GTCCTCAGGGG-CCAG  93

seq1  GGTGAGAAGAACGGATGTGTAGAGGCACATCCTGCCTATTTGGTTGCAGA  147
      ||||||||||||||||||||||| |||||| |||||||||||| ||||||
seq2  GGTGAGAAGAACGGATGTGTAGA-GCACAT-CTGCCTATTTGG-TGCAGA  140

seq1  TCCTGCTGC-TAATTTCGAAGATATTCTAGGG-AAAATAAAAAGACAGAG  195
      || |||||| |||||||| ||||||||||||| |||||||||||||||||
seq2  TCTTGCTGCTTAATTTCG-AGATATTCTAGGGAAAAATAAAAAGACAGAG  189

seq1  GCCAACAGCATTCTAAATTT-AAATAT-AAAAGTTTTATATTTAAACTTT  243
      |||||||||| ||||||||| |||||| ||||||||||||||||||||||
seq2  GCCAACAGCA-TCTAAATTTAAAATATAAAAAGTTTTATATTTAAACTTT  238

seq1  ---AAAAAAAAAATTTTTTTTCAAAAATTTCTCCCTGGTGGATGAAGCAA  290
         ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAATTTTTTTTTCAAAAATTTCTCCCTGGTGGATGAAGCAA  288

seq1  CAACT-CCCCCCACTCCTTCTAAGGTCTCAGTGACAAACCAAAAGTTCAA  339
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCCCCCCACTCCTTCTAAGGTCTCAGTGACAAACCAAAAGTTCAA  338

seq1  GTCCACAAAGGCCCCCGCGGAAGACTAGTAAGTTCAGTGAGCTTATTTAC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAAAGGCCCCCGCGGAAGACTAGTAAGTTCAGTGAGCTTATTTAC  388

seq1  AGACCATACATGAGGACTGTGGGAGACCCCAATGCAGCCTCACTGCAAAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATACATGAGGACTGTGGGAGACCCCAATGCAGCCTCACTGCAAAG  438

seq1  TCTTCACCCACCATGATGATGGTGCCTCCCCATAATAGCACCAGACTCCA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACCCACCATGATGATGGTGCCTCCCCATAATAGCACCAGACTCCA  488

seq1  AGGCCTCCTGGAGTTAAGGCAGACTACAAACAACTGGTTGGAAGGGGTAG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCCTGGAGTTAAGGCAGACTACAAACAACTGGTTGGAAGGGGTAG  538

seq1  CTGGATACTTAAGAGCACAATGACCATCTCTGGTCCTCCTTCTGTGAGGG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATACTTAAGAGCACAATGACCATCTCTGGTCCTCCTTCTGTGAGGG  588

seq1  AGCAGCCACATCAACAAGCCCAGCTGTGATGGCTTTTTGCACACAGGCAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCACATCAACAAGCCCAGCTGTGATGGCTTTTTGCACACAGGCAC  638

seq1  AGCTGAACTCCTGCAAATGGCAGTTGTTTGGCTGAGCCTCACAGTTAGAC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAACTCCTGCAAATGGCAGTTGTTTGGCTGAGCCTCACAGTTAGAC  688

seq1  ACAGCTGTGATTTCCCACACCCGAAGCAGCTATGAGGCAAGCCTCACCCA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGTGATTTCCCACACCCGAAGCAGCTATGAGGCAAGCCTCACCCA  738

seq1  AGCATAGTTCCTGTACACCATAGCCCTTAGTCTCCTGGGAAAATCCAGAG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGTTCCTGTACACCATAGCCCTTAGTCTCCTGGGAAAATCCAGAG  788

seq1  AACCCAGCTGACCACATAGACTAAGACTCTCTGCAGAGCCAACTGGAAGC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGCTGACCACATAGACTAAGACTCTCTGCAGAGCCAACTGGAAGC  838

seq1  AGAATTCTGGGACATTGGCTGTGGTATCCACACACACAGACCTTCCAGAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTGGGACATTGGCTGTGGTATCCACACACACAGACCTTCCAGAA  888

seq1  CCTTGACTTAATACAGAATATGTAGACTGTAAAAGCACAAGATGAGGGCA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACTTAATACAGAATATGTAGACTGTAAAAGCACAAGATGAGGGCA  938

seq1  AGATTTGTCACAAAGATGGGTGACAAGGTTTCTCTTGTATCCCCAAATAC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGTCACAAAGATGGGTGACAAGGTTTCTCTTGTATCCCCAAATAC  988

seq1  CACACCTCTGTTGTCCAAACCTGTGTGTTGTTGTCACTTGACAAGGTCTA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTCTGTTGTCCAAACCTGTGTGTTGTTGTCACTTGACAAGGTCTA  1038

seq1  AGAGAAAGAAATGCTAGCCCACACAACCAGCAGGAATTC  1078
      |||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAAATGCTAGCCCACACAACCAGCAGGAATTC  1077


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