BAC Information

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BAC

Clone NameB6Ng01-294J03
Chromosome17 (Build37)
Map Location 50,626,923 - 50,628,019
singlet/doubletsinglet
Overlap genenone
Upstream geneDaam2, Kif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
Downstream genePlcl2, EG654432, Tbc1d5, LOC100043451, LOC100043452
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294J03.bB6Ng01-294J03.g
ACCGA090664GA090665
length1,2061,112
definitionB6Ng01-294J03.b B6Ng01-294J03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttcttgttcatatatattcctataagggggcggggtagaggaa
gaaaagaggagggaaatgatgtaattataatatcaaaagaagtacctttt
aaaagctgttctagtcatagtctctttcgggagcactaagtggtgctgga
agctgtgtgtgcacccttagacaacagtgcatcccactcctcatcagaga
aacctctctttccccagagaccactacagaaacgcagtttcagaggggat
caataacagcaactcagctacagatcatacctgagctttgcagcaaagat
tctggctgctttgtgcccgcgccccaagaagttacctgcagctacattaa
aaatgtatggactaatgttttttggccagaagaaatttcaagacagataa
tgttgagtctatggcattgttattactaaaaatacttaggcaggtttaca
atgaaaatgagcaagtagagcagaaaaaaaaaatgcagcgaggaaaaaac
actaggaagcttaatgggacaaaaagaaaggtttgtgtggaagagagact
gtaactgtcaaagagcatcccgagggtaaggttaggcctgctctgaactg
gaaaaaggaaagacccacccaactaaatctccaacaggtcaaagagcacc
tatacattttctgcttctagaaagcaactgaataaaagcactactgctaa
tgtgattcatgagaccatggtccaccccaagccggcagctaaccttggga
gtgtccttagcatgtgagcacatggcaggagaatccctctgtaacaatcc
gagggtgaagaggacctgaggccattacaggcagctgtgagagcaaagct
tgggatgcaatgcagacccccaaaggtgctggagatgacaaagctgtggg
cgatctgccaaggacagcagaatacaggagtggaacccagcccaagggag
ggaaagtatgttggggacagcaaagctggaaggggctgtgccatcaacgc
tctttaaaactgaagtccctgaaaatgggactatgggacctgggcatttt
cctgctgggatcagactagtttcagaattttcctcctcatgtccccatcc
tccgttggaaatgggtaatggatagtctctgccaaggattatgctaggat
acgatacttttacctttaattttaataggaggttaacagcgcctaagaaa
aatgtg
gaattcactggattgttcttacagaatgttgcggaacacagaatagggat
cttcggtgatcaactgtgtggatatgtgtttactagatgtctttgcagtg
ggatttttccacttgactttgatgtcctttccatggagtcattaccctgc
acctccccatttcagtattcttttaaagatgataaatgctgtttgacgta
agatccaaggctgaacttccatagtaggctacggttttggacttgattta
tgtccatttggcccttgggttgcttctgtttgatcttagaagttgattaa
tctttctggcaaggcttccaggaattgatagtactgtgctgcacattact
agagcagaattattcagatgttcatgtagtggccttcctctgatggttgt
taccctgttaaagtcctcaaacagggcagcacttagacgaaaacccctga
agggcaaagaaattgtatatgtgggcctaccactggcttcttgtgaaacg
aaagaagagtatggtcctggcttactggtagtaatattccaaggctaggg
aagcagactccccagagaatactaagccttcccctcatccataatatcct
tgataacctgtggctttcagtcggtcagtgtggtgaccttaaaatgctct
aggtgcttctgccctattaagtctctatacctagacttgacttcagatgt
acagtcacattggaaatctaaaagagccttgcatctgaattgtgaaattc
aatgtgtgctatatttaaaatactacaacaattgagtggccagggttaca
gtaaatattatttgggggcttctaccccaccttagatcatttagttccca
agtaaaagacacaaagcctttacatttataataagccctaaagcactaga
gctggggcagatgcaaaccctctgttctattttgtctacttccctgtcaa
taaccccgaggtgtcatttgcagtggtctgcttgggaaactcctggttcc
ggataggatgaccctcatgggccataccacctcatggatccacccatccc
aatgggaggacttttttcattctcctcccaatgtcttttctcctctctat
cgtggttccctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_50626923_50628019
seq2: B6Ng01-294J03.g_68_1179

seq1  GAATTCACTGGATTGTTCTTACAGAATGTTGCGGAACACAGAATAGGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGATTGTTCTTACAGAATGTTGCGGAACACAGAATAGGGAT  50

seq1  CTTCGGTGATCAACTGTGTGGATATGTGTTTACTAGATGTCTTTGCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGTGATCAACTGTGTGGATATGTGTTTACTAGATGTCTTTGCAGTG  100

seq1  GGATTTTTCCACTTGACTTTGATGTCCTTTCCATGGAGTCATTACCCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTCCACTTGACTTTGATGTCCTTTCCATGGAGTCATTACCCTGC  150

seq1  ACCTCCCCATTTCAGTATTCTTTTAAAGATGATAAATGCTGTTTGACGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCCATTTCAGTATTCTTTTAAAGATGATAAATGCTGTTTGACGTA  200

seq1  AGATCCAAGGCTGAACTTCCATAGTAGGCTACGGTTTTGGACTTGATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAAGGCTGAACTTCCATAGTAGGCTACGGTTTTGGACTTGATTTA  250

seq1  TGTCCATTTGGCCCTTGGGTTGCTTCTGTTTGATCTTAGAAGTTGATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATTTGGCCCTTGGGTTGCTTCTGTTTGATCTTAGAAGTTGATTAA  300

seq1  TCTTTCTGGCAAGGCTTCCAGGAATTGATAGTACTGTGCTGCACATTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGGCAAGGCTTCCAGGAATTGATAGTACTGTGCTGCACATTACT  350

seq1  AGAGCAGAATTATTCAGATGTTCATGTAGTGGCCTTCCTCTGATGGTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGAATTATTCAGATGTTCATGTAGTGGCCTTCCTCTGATGGTTGT  400

seq1  TACCCTGTTAAAGTCCTCAAACAGGGCAGCACTTAGACGAAAACCCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGTTAAAGTCCTCAAACAGGGCAGCACTTAGACGAAAACCCCTGA  450

seq1  AGGGCAAAGAAATTGTATATGTGGGCCTACCACTGGCTTCTTGTGAAACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAAAGAAATTGTATATGTGGGCCTACCACTGGCTTCTTGTGAAACG  500

seq1  AAAGAAGAGTATGGTCCTGGCTTACTGGTAGTAATATTCCAAGGCTAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAGTATGGTCCTGGCTTACTGGTAGTAATATTCCAAGGCTAGGG  550

seq1  AAGCAGACTCCCCAGAGAATACTAAGCCTTCCCCTCATCCATAATATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGACTCCCCAGAGAATACTAAGCCTTCCCCTCATCCATAATATCCT  600

seq1  TGATAACCTGTGGCTTTCAGTCGGTCAGTGTGGTGACCTTAAAATGCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACCTGTGGCTTTCAGTCGGTCAGTGTGGTGACCTTAAAATGCTCT  650

seq1  AGGTGCTTCTGCCCTATTAAGTCTCTATACCTAGACTTGACTTCAGATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTTCTGCCCTATTAAGTCTCTATACCTAGACTTGACTTCAGATGT  700

seq1  ACAGTCACATTGGAAATCTAAAAGAGCCTTGCATCTGAATTGTGAAATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCACATTGGAAATCTAAAAGAGCCTTGCATCTGAATTGTGAAATTC  750

seq1  AATGTGTGCTATATTTAAAATACTACAACAATTGAGTGGCCAGGGTTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGCTATATTTAAAATACTACAACAATTGAGTGGCCAGGGTTACA  800

seq1  GTAAATATTATTTGGGGGCTTCTACCCCACCTTAGATCATTTAGTTCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATTATTTGGGGGCTTCTACCCCACCTTAGATCATTTAGTTCCCA  850

seq1  AGTAAAAGACACAAAGCCTTTACATTTATAATAAGCCCTAAAGCACTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAGACACAAAGCCTTTACATTTATAATAAGCCCTAAAGCACTAGA  900

seq1  GCT-GGGCAGATGCAAACCCTCTGTTCTATTTTGTCTACTTCCCTGTCAA  949
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGCAGATGCAAACCCTCTGTTCTATTTTGTCTACTTCCCTGTCAA  950

seq1  TAACCCCGAGGTGTCATTTGCAGTGTTCTGCTTGGGATACTCCT-GTTCC  998
      ||||||||||||||||||||||||| ||||||||||| |||||| |||||
seq2  TAACCCCGAGGTGTCATTTGCAGTGGTCTGCTTGGGAAACTCCTGGTTCC  1000

seq1  -GATAGGATGACCCTCAT-GGCCATAC--ACTCAT-GATCCACCCATCCC  1043
       ||||||||||||||||| ||||||||   ||||| ||||||||||||||
seq2  GGATAGGATGACCCTCATGGGCCATACCACCTCATGGATCCACCCATCCC  1050

seq1  -ATGG--AGAC-TTTTTCCTTCTCCTCCC-ATGTCCTTTCT-CTCTCT-T  1086
       ||||   ||| |||||| |||||||||| ||||| ||||| |||||| |
seq2  AATGGGAGGACTTTTTTCATTCTCCTCCCAATGTCTTTTCTCCTCTCTAT  1100

seq1  CGTGG-TCCCTG  1097
      ||||| ||||||
seq2  CGTGGTTCCCTG  1112