BAC Information

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BAC

Clone NameB6Ng01-296E07
Chromosome17 (Build37)
Map Location 25,606,618 - 25,785,921
singlet/doubletdoublet
Overlap geneTekt4, Sstr5, LOC100042580, Sox8, Tmem112
Upstream gene1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h
Downstream geneLOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296E07.bB6Ng01-296E07.g
ACCGA091920GA091921
length2591,151
definitionB6Ng01-296E07.b B6Ng01-296E07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,606,618 - 25,606,876)(25,784,760 - 25,785,921)
sequence
tcaaggcttctgcccacaaattacacatgtataaagcatctactggtggg
aatgccaggggctcctgccagaggattgacatggagtgtgaagtgagtga
ggggctaactgctagggagtcagcacagggtcggggcggggggggggcgg
ggaggaatgcacagcctgtacagaggtgtgtgggtgaaaccaagcctgag
cactgatcaaaaagagcctgatgttctcaaggcgggaaacgggataggac
agtggggag
gaattcatcatgcagcacacactcggtccaagtgctccaaagggacctta
tcttacttgttttcctcctagcgtcaccgctgccttttcctctgagggaa
atgaatctcgtcacagcccatctgtgtttacccctggccggcagagtcct
cagcgagctctcagtgcgctctgcagatgaccggcctggagtgggtgagg
ctcggggacggcagaggaagatgaacgtgtgttggtggtatttagcccca
gagaggctacagcagatgttccaggcagatgcaacatgaccccaaaagga
agaggggggatttctgatgtccctgctgggcttgcagttaccacggagga
cacattcttgcaggcaggcttccataggaaaggcaggagcttgagaggac
cttccgggggatatgcatgtggtcataaggaccttccacagaggtcatgc
atacaatcacagggaccttccacagaggacatgtaggcagtcacagggac
cttccacagaggacatgcatgcagtccatgcagtccagggaccttctata
gaggacatgcatgcagtcacaggaaccttccacagaggacatgtctgtag
tcacagggaccttccacagaagacgtgtgtactctcaaggaatccgggta
gccccatgaggccttaataaagtagattcaacctcaaaatctgactctcc
caagatcctttcctgccttcctattgctgagtctcaggcccaaccccacc
tccttcttgttccttggtgaggactgataccatggtgggcctcggatgtc
ctgacctggctcagcagcggaggctgagcataccgccccttccggggtca
tcccctcctgcggccatgcagggatcctaggagcagctgtgtaaaccgag
tgtgggaggaagtgagtgaactcaagctctggcccacaggaaggaacaca
gaaaccggtgggtcagagtgggagcagtgcgctccacaccagctgcactc
agtgccacagcgctgcatgtcaagagcatgcagtcacgcccaacacttcc
acacaggctcttggatgatagcatgccactgctcagactaatcctagtgg
gcagaagttctcagctgatctgggacattggtacaggaaactggggagaa
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_25606618_25606876
seq2: B6Ng01-296E07.b_50_308

seq1  TCAAGGCTTCTGCCCACAAATTACACATGTATAAAGCATCTACTGGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCTTCTGCCCACAAATTACACATGTATAAAGCATCTACTGGTGGG  50

seq1  AATGCCAGGGGCTCCTGCCAGAGGATTGACATGGAGTGTGAAGTGAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGGGGCTCCTGCCAGAGGATTGACATGGAGTGTGAAGTGAGTGA  100

seq1  GGGGCTAACTGCTAGGGAGTCAGCACAGGGTCGGGGCGGGGGGGGGGCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTAACTGCTAGGGAGTCAGCACAGGGTCGGGGCGGGGGGGGGGCGG  150

seq1  GGAGGAATGCACAGCCTGGACAGAGGTGTGTGGGTGAAACCAAGCCTGTG  200
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  GGAGGAATGCACAGCCTGTACAGAGGTGTGTGGGTGAAACCAAGCCTGAG  200

seq1  CACTGAGCAGAGAGAGCCTGAGGTTCTCGAGGCGGGAAACGGGATAGGAC  250
      |||||| || | ||||||||| |||||| |||||||||||||||||||||
seq2  CACTGATCAAAAAGAGCCTGATGTTCTCAAGGCGGGAAACGGGATAGGAC  250

seq1  AGTGGGGAG  259
      |||||||||
seq2  AGTGGGGAG  259

seq1: chr17_25784760_25785921
seq2: B6Ng01-296E07.g_68_1218 (reverse)

seq1  CTTCTCCCCAG--TCCTGGTCCCATGTCCCCAGATCCCGCTGAGACACTT  48
      |||||||||||  |||||  || |||| ||||||| | ||||||| ||||
seq2  CTTCTCCCCAGTTTCCTGTACCAATGT-CCCAGAT-CAGCTGAGA-ACTT  47

seq1  CCTGCCCACTAGGATTGGTCTGAGCAGT-GCATGGCCTTAACCATCCCAG  97
       ||||||||||||||| ||||||||||| |||||  ||  | ||| ||| 
seq2  -CTGCCCACTAGGATTAGTCTGAGCAGTGGCATG--CT--ATCAT-CCAA  91

seq1  GAGCCTGTGTGGAAGGTGTTGGGCGTGACTGCATGCTCTTGACCATGCAG  147
      |||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  GAGCCTGTGTGGAA-GTGTTGGGCGTGACTGCATGCTCTTGA-CATGCAG  139

seq1  CGCTGTGGCACCTGAGTGCAGCCTGGTGTGGAGCCGCACTGCTCCCACTC  197
      |||||||||| |||||||||| ||||||||||| ||||||||||||||||
seq2  CGCTGTGGCA-CTGAGTGCAG-CTGGTGTGGAG-CGCACTGCTCCCACTC  186

seq1  TGACCCACCGGTTCCTGTGTTCCTTCCTGTGGGCCAGAGCTTGAGTTCAC  247
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGACCCACCGGTTTCTGTGTTCCTTCCTGTGGGCCAGAGCTTGAGTTCAC  236

seq1  TCACTTCCTCCCACACTCGGTTTACACAGCTGCTCCTAGGATCCCTGCAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCCTCCCACACTCGGTTTACACAGCTGCTCCTAGGATCCCTGCAT  286

seq1  GGCCGCAGGAGGGGATGACCCCGGAAGGGGCGGTATGCTCAGCCTCCGCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCAGGAGGGGATGACCCCGGAAGGGGCGGTATGCTCAGCCTCCGCT  336

seq1  GCTGAGCCAGGTCAGGACATCCGAGGCCCACCATGGTATCAGTCCTCACC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCCAGGTCAGGACATCCGAGGCCCACCATGGTATCAGTCCTCACC  386

seq1  AAGGAACAAGAAGGAGGTGGGGTTGGGCCTGAGACTCAGCAATAGGAAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACAAGAAGGAGGTGGGGTTGGGCCTGAGACTCAGCAATAGGAAGG  436

seq1  CAGGAAAGGATCTTGGGAGAGTCAGATTTTGAGGTTGAATCTACTTTATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAGGATCTTGGGAGAGTCAGATTTTGAGGTTGAATCTACTTTATT  486

seq1  AAGGCCTCATGGGGCTACCCGGATTCCTTGAGAGTACACACGTCTTCTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTCATGGGGCTACCCGGATTCCTTGAGAGTACACACGTCTTCTGT  536

seq1  GGAAGGTCCCTGTGACTACAGACATGTCCTCTGTGGAAGGTTCCTGTGAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTCCCTGTGACTACAGACATGTCCTCTGTGGAAGGTTCCTGTGAC  586

seq1  TGCATGCATGTCCTCTATAGAAGGTCCCTGGACTGCATGGACTGCATGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCATGTCCTCTATAGAAGGTCCCTGGACTGCATGGACTGCATGCA  636

seq1  TGTCCTCTGTGGAAGGTCCCTGTGACTGCCTACATGTCCTCTGTGGAAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTGTGGAAGGTCCCTGTGACTGCCTACATGTCCTCTGTGGAAGG  686

seq1  TCCCTGTGATTGTATGCATGACCTCTGTGGAAGGTCCTTATGACCACATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGATTGTATGCATGACCTCTGTGGAAGGTCCTTATGACCACATG  736

seq1  CATATCCCCCGGAAGGTCCTCTCAAGCTCCTGCCTTTCCTATGGAAGCCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCCCCGGAAGGTCCTCTCAAGCTCCTGCCTTTCCTATGGAAGCCT  786

seq1  GCCTGCAAGAATGTGTCCTCCGTGGTAACTGCAAGCCCAGCAGGGACATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAAGAATGTGTCCTCCGTGGTAACTGCAAGCCCAGCAGGGACATC  836

seq1  AGAAATCCCCCCTCTTCCTTTTGGGGTCATGTTGCATCTGCCTGGAACAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCCCCCTCTTCCTTTTGGGGTCATGTTGCATCTGCCTGGAACAT  886

seq1  CTGCTGTAGCCTCTCTGGGGCTAAATACCACCAACACACGTTCATCTTCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTAGCCTCTCTGGGGCTAAATACCACCAACACACGTTCATCTTCC  936

seq1  TCTGCCGTCCCCGAGCCTCACCCACTCCAGGCCGGTCATCTGCAGAGCGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCGTCCCCGAGCCTCACCCACTCCAGGCCGGTCATCTGCAGAGCGC  986

seq1  ACTGAGAGCTCGCTGAGGACTCTGCCGGCCAGGGGTAAACACAGATGGGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAGCTCGCTGAGGACTCTGCCGGCCAGGGGTAAACACAGATGGGC  1036

seq1  TGTGACGAGATTCATTTCCCTCAGAGGAAAAGGCAGCGGTGACGCTAGGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACGAGATTCATTTCCCTCAGAGGAAAAGGCAGCGGTGACGCTAGGA  1086

seq1  GGAAAACAAGTAAGATAAGGTCCCTTTGGAGCACTTGGACCGAGTGTGTG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACAAGTAAGATAAGGTCCCTTTGGAGCACTTGGACCGAGTGTGTG  1136

seq1  CTGCATGATGAATTC  1162
      |||||||||||||||
seq2  CTGCATGATGAATTC  1151