BAC Information

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BAC

Clone NameB6Ng01-296E15
Chromosome17 (Build37)
Map Location 48,641,588 - 48,642,616
singlet/doubletsinglet
Overlap genenone
Upstream geneCcnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
Downstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296E15.bB6Ng01-296E15.g
ACCGA091936GA091937
length1,2251,043
definitionB6Ng01-296E15.b B6Ng01-296E15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaccagatgttcaaagaagagttaacaccaatatccctcaaatt
ccccaattctttttacaagctgacaattagcttgatatctaaaccatata
aagacccagcaaaggaggagaagtagtgttctgaatagttttaagtcaac
ttggcacaagctgaagtcatctgagattaggaaacttcaagtaagaaaag
acttccataagactgggctgtaggcaagcctgtggagcaatttcttaatc
agtgattgatgcagaagggcccagtatcacggtgggtggtaccattgctg
ggttggtcgtcctgggttctataagaaagcaggctcagaaagcaacagag
aacaagcccgtaagcagcatctctatacatggcctctgcatcaggtcctg
cctccaggttcctgccctacttgagttcctcttctgacttcctgtggtga
tgaacagtcttgtggaagtgtaaagaaaaatatcttttcctccccaaggt
acttttgatcatggtgattcattgcagctatagtaaccctaactaagaca
attacagaccaattttccctatgagcatagatgcagtaattctcaataaa
acacttgctaacagaatccaaaaacataccaaaagattatccaccatgaa
ctagtaagcttcattccacagatgcggtaatgattcaacttacataaatc
aataactacaatatccctacccaccataaacagacttaaaaacaaaaccc
acagaatcatctcatatagattttttttaaaaagctttttgacaaaatct
aacactgctttgtgataaaagttctgaagagcttggggatacaaaggaca
tacttcaacattataaaggcagtttacagcaagaccatagcaaacatcgc
cttaaatggggaggaaaatcaaagcattcccactaaaatcagaacaaggc
aaagctgtccacactctccacatctattcagtcggtacagtgcttgaagt
ctagctgagcaatgagacacccagagtccaagggaatacaaattgaaaag
aagtactcaagtatctttatttgcagaataaataataattaatatataac
aatagtgaacactaaaaattgacccagaaggtctacgctgaaagaacacc
tttcaccaagtaatgaataaaataactcacgaaatccagcagctctctct
attacacatgtaacaaaatggggtc
gaattcttacaatgtacactggaaagtatgtatgacttccgcgcacactt
aatagatcaaagcaaggctcatgtctgaggctgtggctgtggctgtggcg
gtggctgtggctatggctatggctatggttgtgactgtttctgtagcaga
tatagagcctctaagtactggggacgacagcacagcctttctggagaggc
tgaaacatcattctgtctcaaatatagccgttgtatgctggttggaagac
tgacaagccagattgtcaggaggacctgacaggagcggctgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtacgtgtgcatgcaagcagaact
gtactttcttccctaaagatgatttcatgcttgttggatccatcatgctt
gggaaacccttctgctgaccagcaagtgctgcttagaagaaactctagtc
acatagctgccagccacatcagatcctaattacctgataaacacctctta
cctgggtctattttttccccagtccttcttgtcccacaccctcaccaacc
tttttgtctcaatttcatttcttctctggtcctcaagacagtgattcctc
catggtcatttaacatttctatcttctagccaaacatggtggtgtacacc
cttagtctcagcactcaggagacagactcagacagagttccaggacagcc
tgatttacagagcaagttccaggacagccagggctacacagagaaaccct
gtctcaaaacaaacaaacaaacaaacaataaaacaaaacaccagcatact
tcccaggcccccaaagaaacaaaaaaacaaaggagggcattggccacttt
ggggtggacaggttctactgcttgtacgtctgtgacaaaggggctgccaa
aaatgaaaacattctaaagaaaacacctgtttgctcatatttgactgtca
aacttattgaaacaatggacccccaagaaatgggtgattttccttcagaa
aatctctcaggctcggaagatgaaaagggaagggaagtttact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_48641588_48642616
seq2: B6Ng01-296E15.g_69_1111

seq1  GAATTCTTACAATGTACACTGGAAAGTATGTATGACTTCCGCGCACACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACAATGTACACTGGAAAGTATGTATGACTTCCGCGCACACTT  50

seq1  AATAGATCAAAGCAAGGCTCATGTCTGAGGCTGTGGCTGTGGCTGTGGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATCAAAGCAAGGCTCATGTCTGAGGCTGTGGCTGTGGCTGTGGCG  100

seq1  GTGGCTGTGGCTATGGCTATGGCTATGGTTGTGACTGTTTCTGTAGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTGGCTATGGCTATGGCTATGGTTGTGACTGTTTCTGTAGCAGA  150

seq1  TATAGAGCCTCTAAGTACTGGGGACGACAGCACAGCCTTTCTGGAGAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGCCTCTAAGTACTGGGGACGACAGCACAGCCTTTCTGGAGAGGC  200

seq1  TGAAACATCATTCTGTCTCAAATATAGCCGTTGTATGCTGGTTGGAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATCATTCTGTCTCAAATATAGCCGTTGTATGCTGGTTGGAAGAC  250

seq1  TGACAAGCCAGATTGTCAGGAGGACCTGACAGGAGCGGCTGTGTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGCCAGATTGTCAGGAGGACCTGACAGGAGCGGCTGTGTGTGTGT  300

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTACGTGTGCATGCAAGCAGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTACGTGTGCATGCAAGCAGAACT  350

seq1  GTACTTTCTTCCCTAAAGATGATTTCATGCTTGTTGGATCCATCATGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTCTTCCCTAAAGATGATTTCATGCTTGTTGGATCCATCATGCTT  400

seq1  GGGAAACCCTTCTGCTGACCAGCAAGTGCTGCTTAGAAGAAACTCTAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACCCTTCTGCTGACCAGCAAGTGCTGCTTAGAAGAAACTCTAGTC  450

seq1  ACATAGCTGCCAGCCACATCAGATCCTAATTACCTGATAAACACCTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCTGCCAGCCACATCAGATCCTAATTACCTGATAAACACCTCTTA  500

seq1  CCTGGGTCTATTTTTTCCCCAGTCCTTCTTGTCCCACACCCTCACCAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTCTATTTTTTCCCCAGTCCTTCTTGTCCCACACCCTCACCAACC  550

seq1  TTTTTGTCTCAATTTCATTTCTTCTCTGGTCCTCAAGACAGTGATTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCTCAATTTCATTTCTTCTCTGGTCCTCAAGACAGTGATTCCTC  600

seq1  CATGGTCATTTAACATTTCTATCTTCTAGCCAAACATGGTGGTGTACACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCATTTAACATTTCTATCTTCTAGCCAAACATGGTGGTGTACACC  650

seq1  CTTAGTCTCAGCACTCAGGAGACAGACTCAGACAGAGTTCCAGGACAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCTCAGCACTCAGGAGACAGACTCAGACAGAGTTCCAGGACAGCC  700

seq1  TGATTTACAGAGCAAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTACAGAGCAAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCT  750

seq1  GTCTCAAAACAAACAAACAAACAAACAATAAAACAAAACACCAGCATACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAACAAACAAACAAACAAACAATAAAACAAAACACCAGCATACT  800

seq1  TCCCAGGCCCCCAAAGAAACAAAAAAACAAAGGAGGGCATTGGCCACTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGCCCCCAAAGAAACAAAAAAACAAAGGAGGGCATTGGCCACTTT  850

seq1  GGGGTGGACAGGTTCTACTGCTTGTACGTCTGTGACAAAGGGGCTG-CAG  899
      |||||||||||||||||||||||||||||||||||||||||||||| || 
seq2  GGGGTGGACAGGTTCTACTGCTTGTACGTCTGTGACAAAGGGGCTGCCAA  900

seq1  AAATGAAGACATTCTAAAG-AGACACCTG-TTGCTCCAATTTGACTGTCA  947
      ||||||| ||||||||||| | ||||||| ||||||  ||||||||||||
seq2  AAATGAAAACATTCTAAAGAAAACACCTGTTTGCTCATATTTGACTGTCA  950

seq1  AAC-TATTGAAACAATGGA-CCCCAAGAAAT-GGTGATTT--CCTCAGAA  992
      ||| ||||||||||||||| ||||||||||| ||||||||  | ||||||
seq2  AACTTATTGAAACAATGGACCCCCAAGAAATGGGTGATTTTCCTTCAGAA  1000

seq1  A---TCTCAAGCTCGG-AGAAGAAAAGG--AAGGAGGTTTACT  1029
      |   ||||| |||||| ||| |||||||  | ||| |||||||
seq2  AATCTCTCAGGCTCGGAAGATGAAAAGGGAAGGGAAGTTTACT  1043