BAC Information

Click to search

BAC

Clone NameB6Ng01-298D11
Chromosome12 (Build37)17 (Build37)
Map Location 67,719,873 - 67,721,04644,519,565 - 44,519,697
singlet/doubletsingletsinglet
Overlap geneMdga2
Upstream geneLOC100040700, EG238217
Downstream geneLOC100040745
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298D11.bB6Ng01-298D11.g
ACCGA093381GA093382
length1,171206
definitionB6Ng01-298D11.b B6Ng01-298D11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(67,719,873 - 67,721,046)(44,519,565 - 44,519,697)
sequence
gaattctaagatctgatataactaaaataaaacttatagtaattctcctg
agttatttttttttctcttctaggaactcgtgttgcagctaccaaggttc
ctcacatctataaccaagctacactcatcatttgaatttccttaccccag
atatacatgtgaaactcagagagcaaattctggaattagaggctttattt
aatacatacttttccacattccccatctttatatttgatacgattacaaa
aaaccccaccaactaaccaaccaaacaaacaattctaatgtgaattaaat
atggtgttgtattaaatgtggaaagaatttagttcagtagttgccaagaa
gttggcatattaataattttatattctaaaatctttctctgaatcttttc
ttaattcttgattacaattttcagtttcagcatgaaaactttatcccatg
caagaaattcctactgttttctccatctccggtgttctcttttcttccat
acccctgctgctaagtgctcattcatgtatggggacaaagactgtcgatg
gcaagtggcagacctttgttaaaactgtttcaggaaagtagttccctttg
cattaaatcctaagtctacctacacatgcttggtttggcatgggtggaca
catatttgacacagaggtaaaaatgcaaactttttttcctataataattc
ccatgtctgcagggaattttaactgaccaacaatgccttttatcctttgt
ggaatttatcattcatgttgcagtggaggtggaaagctcattagctcatt
atcctgagtacttctaaacttggtgttttggtcacttcatctctgtcata
aatataattgaagccacatctatagatcccattctttacccccattaagg
cattactcagtgccatgtcttccatggcacagtctgacttctccagctgt
atagtcacattttttttcacttgcagttgggttgataaaagtgaggtact
ccacactcagttttggcgcacactgaaaaagactattaggcaaatcagaa
tcagtattgcagaaaataatggcttacatgggttaaattcatcctgaaag
aatttccaatgtttgtgtactcatcataacttatgcaagcttcaatcact
ccccctttctccccttcatcc

tttgtatagttctataccccacttttgattgggtcatttgtgataaccag
aagctggaaacaacccagatgtcccacaacagaagaatggatacagaaaa
tgtggttcatttacacaatggaatactactcagatattaaaaatgaggac
atcatgagttttgcaggcaaatggatggaactagaaaatatcctgagtga
gataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_67719873_67721046
seq2: B6Ng01-298D11.b_46_1216 (reverse)

seq1  GGATGGAGGGGAGAAGGGGGAGAGTGATGGAAGCTTGCATAAG-TATGAT  49
      ||||| ||||||||| |||| ||||||| |||||||||||||| ||||||
seq2  GGATGAAGGGGAGAAAGGGG-GAGTGATTGAAGCTTGCATAAGTTATGAT  49

seq1  GAGTACCACAAACATTTGGAATTCTTTTCAAGAATTAAATTTTACCCCAT  99
      ||||| |||||||||| | ||||||||   || || ||  |||| |||||
seq2  GAGTA-CACAAACATTGGAAATTCTTT--CAGGATGAA--TTTAACCCAT  94

seq1  GT-AGCCAT--ATTTCTGC-ATACTTGAATTCTGATTTGCCT-ATAGTCT  144
      || ||||||   ||||||| |||||   |||||||||||||| |||||||
seq2  GTAAGCCATTATTTTCTGCAATACT--GATTCTGATTTGCCTAATAGTCT  142

seq1  TTTTCAGTGTGCGCCAAAAACTGAGTGTGGAGTACCTCACTTTTATCAAC  194
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTGTGCGCC-AAAACTGAGTGTGGAGTACCTCACTTTTATCAAC  191

seq1  CAAACTGCAAGTG-AAAAAAATGTGACTATACAGCTGGAGAAGTCAGACT  243
      | ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCAACTGCAAGTGAAAAAAAATGTGACTATACAGCTGGAGAAGTCAGACT  241

seq1  GTGCCATGGAAGACATGGCACCTGAGTAATGCCTTAATGGGGGTAAAGAA  293
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTGCCATGGAAGACATGGCA-CTGAGTAATGCCTTAATGGGGGTAAAGAA  290

seq1  TGGGATCTATAGATGTGGCTTCAATTATATTTATGACAGAGATGAAGTGA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCTATAGATGTGGCTTCAATTATATTTATGACAGAGATGAAGTGA  340

seq1  CCAAAACACCAAGTTTAGAAGTACTCAGGATAATGAGCTAATGAGCTTTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACACCAAGTTTAGAAGTACTCAGGATAATGAGCTAATGAGCTTTC  390

seq1  CACCTCCACTGCAACATGAATGATAAATTCCACAAAGGATAAAAGGCATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCACTGCAACATGAATGATAAATTCCACAAAGGATAAAAGGCATT  440

seq1  GTTGGTCAGTTAAAATTCCCTGCAGACATGGGAATTATTATAGGAAAAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCAGTTAAAATTCCCTGCAGACATGGGAATTATTATAGGAAAAAA  490

seq1  AGTTTGCATTTTTACCTCTGTGTCAAATATGTGTCCACCCATGCCAAACC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCATTTTTACCTCTGTGTCAAATATGTGTCCACCCATGCCAAACC  540

seq1  AAGCATGTGTAGGTAGACTTAGGATTTAATGCAAAGGGAACTACTTTCCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGTGTAGGTAGACTTAGGATTTAATGCAAAGGGAACTACTTTCCT  590

seq1  GAAACAGTTTTAACAAAGGTCTGCCACTTGCCATCGACAGTCTTTGTCCC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGTTTTAACAAAGGTCTGCCACTTGCCATCGACAGTCTTTGTCCC  640

seq1  CATACATGAATGAGCACTTAGCAGCAGGGGTATGGAAGAAAAGAGAACAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGAATGAGCACTTAGCAGCAGGGGTATGGAAGAAAAGAGAACAC  690

seq1  CGGAGATGGAGAAAACAGTAGGAATTTCTTGCATGGGATAAAGTTTTCAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGATGGAGAAAACAGTAGGAATTTCTTGCATGGGATAAAGTTTTCAT  740

seq1  GCTGAAACTGAAAATTGTAATCAAGAATTAAGAAAAGATTCAGAGAAAGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAACTGAAAATTGTAATCAAGAATTAAGAAAAGATTCAGAGAAAGA  790

seq1  TTTTAGAATATAAAATTATTAATATGCCAACTTCTTGGCAACTACTGAAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAATATAAAATTATTAATATGCCAACTTCTTGGCAACTACTGAAC  840

seq1  TAAATTCTTTCCACATTTAATACAACACCATATTTAATTCACATTAGAAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTTTCCACATTTAATACAACACCATATTTAATTCACATTAGAAT  890

seq1  TGTTTGTTTGGTTGGTTAGTTGGTGGGGTTTTTTGTAATCGTATCAAATA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGGTTGGTTAGTTGGTGGGGTTTTTTGTAATCGTATCAAATA  940

seq1  TAAAGATGGGGAATGTGGAAAAGTATGTATTAAATAAAGCCTCTAATTCC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGGGGAATGTGGAAAAGTATGTATTAAATAAAGCCTCTAATTCC  990

seq1  AGAATTTGCTCTCTGAGTTTCACATGTATATCTGGGGTAAGGAAATTCAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTGCTCTCTGAGTTTCACATGTATATCTGGGGTAAGGAAATTCAA  1040

seq1  ATGATGAGTGTAGCTTGGTTATAGATGTGAGGAACCTTGGTAGCTGCAAC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAGTGTAGCTTGGTTATAGATGTGAGGAACCTTGGTAGCTGCAAC  1090

seq1  ACGAGTTCCTAGAAGAGAAAAAAAAATAACTCAGGAGAATTACTATAAGT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTTCCTAGAAGAGAAAAAAAAATAACTCAGGAGAATTACTATAAGT  1140

seq1  TTTATTTTAGTTATATCAGATCTTAGAATTC  1174
      |||||||||||||||||||||||||||||||
seq2  TTTATTTTAGTTATATCAGATCTTAGAATTC  1171


seq1: chr17_44519565_44519697
seq2: B6Ng01-298D11.g_148_277 (reverse)

seq1  GTTACCTCACTCAGGATGATATCCTCCAGATCCATCTATTTGCCTATGAA  50
      |||| |||||||||   |||||  || || |||||| ||||||||   ||
seq2  GTTATCTCACTCAG---GATATTTTCTAGTTCCATCCATTTGCCTGCAAA  47

seq1  TTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAA  100
        |||| |  || |  ||||||||| |||||||||| |||||||||||||
seq2  ACTCATGATGTCCTCATTTTTAATATCTGAGTAGTATTCCATTGTGTAAA  97

seq1  TGTATCACATTTTCTGTATCCATTCCTCTGTTG  133
      || | |||||||||||||||||||| |||||||
seq2  TGAACCACATTTTCTGTATCCATTCTTCTGTTG  130


| Home | SequenceCutter | Blast | Download |