BAC Information

Click to search

BAC

Clone NameB6Ng01-299E16
Chromosome17 (Build37)
Map Location 42,736,999 - 42,840,133
singlet/doubletdoublet
Overlap geneOpn5, Gpr115
Upstream geneLOC627626
Downstream geneGpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110, Gpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299E16.bB6Ng01-299E16.g
ACCGA094171GA094172
length976311
definitionB6Ng01-299E16.b B6Ng01-299E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,839,406 - 42,840,133)(42,736,999 - 42,737,309)
sequence
gaattccaggtgcttgctggactcgtctttaaggagagaggaagtttaag
ctgtaacctgcccaccgggttatgtgattacctcaagggtggtggaggtg
ggggtcgtaaggctacacaccccgggacgtgcaggcccagagcagggagg
aagctatcttatgctgatctcaggacaagatttttgtgctcgggactggc
tcagattgcagagctttctggcccaagtcgctccagttccaggggatccc
tcctctggcctccagggagcgtgcatggccatagtatagagacatatcct
caggtagacaatcctcatccatgaagctaaaacctgaaaaacaaaaatta
aaagttaaaaaaaaaaatagtgaaaaaaggcttaacaccaaaacaaaatt
aaaagcaaaatattcaccttcactttagggtattatatttttaaactatc
gatgctattaaagttaacatcaaagatttgtgaggggaattaaaagaaaa
tgtcctttcattgtctcaccaagatgctttgtcaacttaaaagtttctta
gaggtgaagcagttatacttgatgtttctatgtgtagacgtctcaggctt
acaacagttcaactcccaaacctttgagtttataactgtgctaaatcgta
tgcattcggcagaaattttatttgaactgagctcttttcctgggctagca
cgatgtagcgtggtacttgcttaccagacttggcagttcctgggctagca
cgatgtagcgtggtacctgctcaccagactggggcagtggcagcaagcca
cagctctgagtcagctctgagcttaccgtggtaacaaaccaatactccat
ggtgttacaaaactgtggtgttttagcagatagctacacccaagtacaaa
ctgtgacttaaggctatttttcaactcaaaatggggcttgttgggtgcaa
gccccccttccatgaaggagcatcta
agaacagggagagtgaaaggccacagaggtgtgagtctcactcacattct
ctcaatttgaacttaaatgcacacacattatatacatatacatcatatac
atatactacatatacatatactgttttcaggataacaacagcattcaagg
acaagagaatgagaggaatgaaatcttggaattggaaggaacttttctaa
tacaatgattttcaaatgctcccttcttggggagtctataaagctcttct
gaaagcacaaatatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_42839406_42840133
seq2: B6Ng01-299E16.b_46_773 (reverse)

seq1  TCTGGTAAGCAAGTACCACGCTACATCGTGCTAGCCCAGGAAAAGAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTAAGCAAGTACCACGCTACATCGTGCTAGCCCAGGAAAAGAGCTC  50

seq1  AGTTCAAATAAAATTTCTGCCGAATGCATACGATTTAGCACAGTTATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAATAAAATTTCTGCCGAATGCATACGATTTAGCACAGTTATAAA  100

seq1  CTCAAAGGTTTGGGAGTTGAACTGTTGTAAGCCTGAGACGTCTACACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGGTTTGGGAGTTGAACTGTTGTAAGCCTGAGACGTCTACACATA  150

seq1  GAAACATCAAGTATAACTGCTTCACCTCTAAGAAACTTTTAAGTTGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATCAAGTATAACTGCTTCACCTCTAAGAAACTTTTAAGTTGACAA  200

seq1  AGCATCTTGGTGAGACAATGAAAGGACATTTTCTTTTAATTCCCCTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTTGGTGAGACAATGAAAGGACATTTTCTTTTAATTCCCCTCACA  250

seq1  AATCTTTGATGTTAACTTTAATAGCATCGATAGTTTAAAAATATAATACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTGATGTTAACTTTAATAGCATCGATAGTTTAAAAATATAATACC  300

seq1  CTAAAGTGAAGGTGAATATTTTGCTTTTAATTTTGTTTTGGTGTTAAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTGAAGGTGAATATTTTGCTTTTAATTTTGTTTTGGTGTTAAGCC  350

seq1  TTTTTTCACTATTTTTTTTTTTAACTTTTAATTTTTGTTTTTCAGGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCACTATTTTTTTTTTTAACTTTTAATTTTTGTTTTTCAGGTTTT  400

seq1  AGCTTCATGGATGAGGATTGTCTACCTGAGGATATGTCTCTATACTATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCATGGATGAGGATTGTCTACCTGAGGATATGTCTCTATACTATGG  450

seq1  CCATGCACGCTCCCTGGAGGCCAGAGGAGGGATCCCCTGGAACTGGAGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCACGCTCCCTGGAGGCCAGAGGAGGGATCCCCTGGAACTGGAGCG  500

seq1  ACTTGGGCCAGAAAGCTCTGCAATCTGAGCCAGTCCCGAGCACAAAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGCCAGAAAGCTCTGCAATCTGAGCCAGTCCCGAGCACAAAAATC  550

seq1  TTGTCCTGAGATCAGCATAAGATAGCTTCCTCCCTGCTCTGGGCCTGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTGAGATCAGCATAAGATAGCTTCCTCCCTGCTCTGGGCCTGCAC  600

seq1  GTCCCGGGGTGTGTAGCCTTACGACCCCCACCTCCACCACCCTTGAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGGGGTGTGTAGCCTTACGACCCCCACCTCCACCACCCTTGAGGTA  650

seq1  ATCACATAACCCGGTGGGCAGGTTACAGCTTAAACTTCCTCTCTCCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATAACCCGGTGGGCAGGTTACAGCTTAAACTTCCTCTCTCCTTAA  700

seq1  AGACGAGTCCAGCAAGCACCTGGAATTC  728
      ||||||||||||||||||||||||||||
seq2  AGACGAGTCCAGCAAGCACCTGGAATTC  728

seq1: chr17_42736999_42737309
seq2: B6Ng01-299E16.g_71_381

seq1  AGAACAGGGAGAGTGAAAGGCCACAGAGGTGTGAGTCTCACTCACATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGGGAGAGTGAAAGGCCACAGAGGTGTGAGTCTCACTCACATTCT  50

seq1  CTCAATTTGAACTTAAATGCACACACATTATATACATATACATCATATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTTGAACTTAAATGCACACACATTATATACATATACATCATATAC  100

seq1  ATATACTACATATACATATACTGTTTTCAGGATAACAACAGCATTCAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTACATATACATATACTGTTTTCAGGATAACAACAGCATTCAAGG  150

seq1  ACAAGAGAATGAGAGGAATGAAATCTTGGAATTGGAAGGAACTTTTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGAATGAGAGGAATGAAATCTTGGAATTGGAAGGAACTTTTCTAA  200

seq1  TACAATGATTTTCAAATGCTCCCTTCTTGGGGAGTCTATAAAGCTCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGATTTTCAAATGCTCCCTTCTTGGGGAGTCTATAAAGCTCTTCT  250

seq1  GAAAGCACAAATATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCACAAATATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  300

seq1  GTGTGTGTGTG  311
      |||||||||||
seq2  GTGTGTGTGTG  311