BAC Information

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BAC

Clone NameB6Ng01-300A16
Chromosome17 (Build37)
Map Location 63,115,286 - 63,116,479
singlet/doubletsinglet
Overlap geneEfna5
Upstream genenone
Downstream geneFbxl17, Ppia-ps17_1026.1, LOC638867, LOC668677
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300A16.bB6Ng01-300A16.g
ACCGA094718GA094719
length1,195777
definitionB6Ng01-300A16.b B6Ng01-300A16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacagcaaccacggtctcccacacctcactctactgggtctgtg
cagggcttttaaaaaaactattttgtgacctgacatacaaatatgactgt
tattcctcattaaaggaaatgagcagagttctgaaatgattcctttcaaa
tgtcaaatgcttgctttccttcttaaaactgtacgtaggatttgtttttt
aaagtttcttttgtgaacagacaaactgcaatggatgtccacaaagctgg
cagttcccccaatggcatttcagcatcctaatttgaatggcagtgacaat
aacagctcacttaatgggacattgcttcccataaaatatttcaaggctaa
caaattaaaaggagtgggaagttaattgctccagagtataaacagatgta
tagtcaaagcacatgactttgtcatagaaagaaaactgattaaggcttta
aggaacttttgaaaaagttctcccatctccagtgttccaattcagtcttg
tgcctcaaagaaaggaggtgttaccactagtcatttttctgtgccactga
cataggggcaattgatatttacataattcatttaaggttctaataaaaca
aaacatgctaacaagtaatttaggctcatagaaacattaagtcaaagaaa
aaggaaacaatattgcaaggagaaaagaatgtgaagaaagtaatgggcaa
ggaaagggaaatattagtgagatacagagggtctctcttaagtcctttaa
ttacgcctacaaattactacaggatgaatgctatgtggtcaaccttctca
tcaactattctatgcgttgagcactataattaattacatatttgcccaca
ggaatactgtgtctcatgttttagtcaaggttaccatgctaagcagtacc
agagccaagcctcagatgctcactcggcatgccttcggaggggcatatgc
tcttagatccagcaacagcatcttctctgggccaggtctagaggtcacca
tgctgttggcctgggcagctgtgcatctctcagctgctctcgaacactca
gaaatgttagctcaatctggacttgtgttctaggtgatgtcccttatcct
gagcctggcaagggtcctcactcttgctccacaatggggccttttgttac
attactcacagagacacgccaattggagagacctgagactcttta

gaattccaatgtcttgttgtattaaaccttcttatccatgaacatagaca
attttaatgtttatttagttcttctttgatgatgtattttgtcacttttg
tagttttctttatatggatcctgatatatctttctgtatttatacttaaa
tatttgatgttgggagatattagtatgaatgataatgcattttaaaatta
aaatgccactttactattactggtatagagaaagatgagttgcttttgca
catgaatcttatgcaattctataattctataactcttgttggttcaacat
attttatgctaattctttggacttttctacacaaaggcacttttattctt
gccttttgcatttatctgcctattgtcccccttttgtgtcttagtggtta
gggatattgagtagtgttgaaaaaggagtgtcacaggaagtatcattgcc
ttgattctaattttagttggtatgctcttagtttttcattaccaatcatt
attttatatatatgtatatatacatatatgtgtgtaagtataatttttga
aattatatcacttccccttccattttccttcctctaaatacccctctctg
ctcactttcatgacctctttttttcatgaattgttgttatatacatacat
ttacatatgtatgtgtatatgtatgtatgtcaatatatgtttctgaaata
tataaatacaatctgctttagtcttattaacatgtatgtatgtattttat
gtatgtatgtaaatatcatttatgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_63115286_63116479
seq2: B6Ng01-300A16.b_46_1240

seq1  GAATTCCACAGCAACCACGGTCTCCCACACCTCACTCTACTGGGTCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGCAACCACGGTCTCCCACACCTCACTCTACTGGGTCTGTG  50

seq1  CAGGGCTTTTAAAAAAACTATTTTGTGACCTGACATACAAATATGACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTTTTAAAAAAACTATTTTGTGACCTGACATACAAATATGACTGT  100

seq1  TATTCCTCATTAAAGGAAATGAGCAGAGTTCTGAAATGATTCCTTTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTCATTAAAGGAAATGAGCAGAGTTCTGAAATGATTCCTTTCAAA  150

seq1  TGTCAAATGCTTGCTTTCCTTCTTAAAACTGTACGTAGGATTTGTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAATGCTTGCTTTCCTTCTTAAAACTGTACGTAGGATTTGTTTTTT  200

seq1  AAAGTTTCTTTTGTGAACAGACAAACTGCAATGGATGTCCACAAAGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCTTTTGTGAACAGACAAACTGCAATGGATGTCCACAAAGCTGG  250

seq1  CAGTTCCCCCAATGGCATTTCAGCATCCTAATTTGAATGGCAGTGACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCCCCAATGGCATTTCAGCATCCTAATTTGAATGGCAGTGACAAT  300

seq1  AACAGCTCACTTAATGGGACATTGCTTCCCATAAAATATTTCAAGGCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTCACTTAATGGGACATTGCTTCCCATAAAATATTTCAAGGCTAA  350

seq1  CAAATTAAAAGGAGTGGGAAGTTAATTGCTCCAGAGTATAAACAGATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAAAAGGAGTGGGAAGTTAATTGCTCCAGAGTATAAACAGATGTA  400

seq1  TAGTCAAAGCACATGACTTTGTCATAGAAAGAAAACTGATTAAGGCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAAAGCACATGACTTTGTCATAGAAAGAAAACTGATTAAGGCTTTA  450

seq1  AGGAACTTTTGAAAAAGTTCTCCCATCTCCAGTGTTCCAATTCAGTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTTTTGAAAAAGTTCTCCCATCTCCAGTGTTCCAATTCAGTCTTG  500

seq1  TGCCTCAAAGAAAGGAGGTGTTACCACTAGTCATTTTTCTGTGCCACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAAAGAAAGGAGGTGTTACCACTAGTCATTTTTCTGTGCCACTGA  550

seq1  CATAGGGGCAATTGATATTTACATAATTCATTTAAGGTTCTAATAAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGGGCAATTGATATTTACATAATTCATTTAAGGTTCTAATAAAACA  600

seq1  AAACATGCTAACAAGTAATTTAGGCTCATAGAAACATTAAGTCAAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCTAACAAGTAATTTAGGCTCATAGAAACATTAAGTCAAAGAAA  650

seq1  AAGGAAACAATATTGCAAGGAGAAAAGAATGTGAAGAAAGTAATGGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACAATATTGCAAGGAGAAAAGAATGTGAAGAAAGTAATGGGCAA  700

seq1  GGAAAGGGAAATATTAGTGAGATACAGAGGGTCTCTCTTAAGTCCTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGAAATATTAGTGAGATACAGAGGGTCTCTCTTAAGTCCTTTAA  750

seq1  TTACGCCTACAAATTACTACAGGATGAATGCTATGTGGTCAACCTTCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGCCTACAAATTACTACAGGATGAATGCTATGTGGTCAACCTTCTCA  800

seq1  TCAACTATTCTATGCGTTGAGCACTATAATTAATTACATATTTGCCCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTATTCTATGCGTTGAGCACTATAATTAATTACATATTTGCCCACA  850

seq1  GGAATACTGTGTCTCAGGTTTTAGTCAAGGTTACCATGCTAAGCAGTACC  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGAATACTGTGTCTCATGTTTTAGTCAAGGTTACCATGCTAAGCAGTACC  900

seq1  AGAGCCAAGCCTCAGATGCTCACTCGGCATGCCTTCGGAGGGGCATATGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAAGCCTCAGATGCTCACTCGGCATGCCTTCGGAGGGGCATATGC  950

seq1  TCTTAGATCCAGCAACAGCATCTTCTCTGGGCCAGGTCTAGAGGTCACCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGATCCAGCAACAGCATCTTCTCTGGGCCAGGTCTAGAGGTCACCA  1000

seq1  TGCTGTTGGCCT-GGCAGCTGTGCATCTCTCCAGCTGCTCTCCGAACAAC  1049
      |||||||||||| ||||||||||||||||| |||||||||| ||||| ||
seq2  TGCTGTTGGCCTGGGCAGCTGTGCATCTCT-CAGCTGCTCT-CGAAC-AC  1047

seq1  TCAGAAATGTTTAGCTCAATCTGGACTTGTG-TCTTAGTGATGTCCCTTA  1098
      ||||||||| ||||||||||||||||||||| |||  |||||||||||||
seq2  TCAGAAATG-TTAGCTCAATCTGGACTTGTGTTCTAGGTGATGTCCCTTA  1096

seq1  TCCTGAGCCCTGGCAGGGGTCCTTCACCTCTTGCTCCAC-ATGGGGCCCT  1147
      ||||||| ||||||| |||||| ||| |||||||||||| |||||||| |
seq2  TCCTGAG-CCTGGCAAGGGTCC-TCA-CTCTTGCTCCACAATGGGGCCTT  1143

seq1  TTGTTTAACATAACCCACAGAGACAGCCCA--TGGAGAG--CTGAG---C  1190
      |||||  |||| || ||||||||||  |||  |||||||  |||||   |
seq2  TTGTT--ACATTACTCACAGAGACACGCCAATTGGAGAGACCTGAGACTC  1191

seq1  TTTA  1194
      ||||
seq2  TTTA  1195


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