BAC Information

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BAC

Clone NameB6Ng01-300I23
Chromosome17 (Build37)
Map Location 52,739,508 - 52,919,740
singlet/doubletdoublet
Overlap genenone
Upstream geneSatb1, EG628919, LOC672987, EG328839
Downstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300I23.bB6Ng01-300I23.g
ACCGA095107GA095108
length1,103810
definitionB6Ng01-300I23.b B6Ng01-300I23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,918,628 - 52,919,740)(52,739,508 - 52,740,317)
sequence
gaattcattaagattgttgattggaaactgagttttacaatgctgtcttt
gctggcttccaacttaatacatagctcaaactgagctggaattctcagtt
cgttttgtgcagtctcttgagtactaggaaaatgttgtatgttaacactc
agtgttgttacatgttattacatatgacccagtctgacacaaggatggtg
cttctggcaccaagatacatcatcaagttttgactttgtgaagcctactc
ctagttaaaaagacagatgtgattgttgagaaagctggtttaaaaaggca
agagagctctgtttcagacatccaagagtatttctatcatgcatttcaag
ttctgtacattctccataactatgtcttgtgttataaatatacctaaaga
aaatgatgactagcagctcccttatcacgaaggaagtagtctaacttatt
tgaaatataaaataaggaaagaaagacagggagaaaatggagtgaaagaa
aagattgtaagtctatctgccattttatactcacatatatatccatatat
gtctttcttctaattgatagatcaaagtgtcttcttttctcactaatttg
gcctggttctatgcctttctatgatcattagaaagtgatagaaggaatgt
gtataactttagaagttatgtaggttctatagttgcctagttgggatcca
acctctgggtaaggcagcaaggctcaactgaataaacaagggagaaagga
aggaagaaagaaaggaaagtgaatatattatggtaggtatgaaagtgcca
gatactatatgatagacacatccatatacataatgcataggtggatagat
gcacaatagatagatggtagctgataggtggtagatacatgagtcgatgc
cagtcaactgcccttaggaaagatacaattgggacagctgataattggaa
tgaagtctctaaagcacattctagcccagccaactacttagtgatggctg
ctacatgcatgatgccagcttactatgtatgactacagcatgaacagaaa
tcatgaactgttttagattgcaagtgtaggaattttgttatgcatgaaga
cta
gaattcctgcagtggagaaggatgtgcaataacgtgaattggtgttcttt
tggtccaccagcaaagaattttcctttaaggaaaagataaagtttagaac
cattgcctatcaggacacatttctgcctttgattcgaaggtgacaaaata
caagaggattcagcgtgcttagactcctgtggtgattaagtcttgatagg
gtagtttggcctctagtgctacaaacacttaacaggaatatcagtgagtg
tttgagctgagattagagatcctagaactcaagacccaagatgaaagatg
cattcctgagaaagacatccgggcagaaaaaggaaacaagaggcactgtg
gtccacttaccaagttcagtttggtgggaggctgggatcgaaggtgagtt
aagggcagggatgttgtgcctagttctagccttgacttgttttggatact
ggaggaaagactacattatgggatggtacttgactgacttcttttgccac
tgaacccaaattggcttttgggtttccattactaagcctcgtatagtttc
tttctagcaagccaggccagactaaagaggaaaaagtagttgatgttttt
acgctcaggcacacttatagtggcttacacataaatttcatgcttagctt
caagccacttctcactcttccattggcagaagcggtctgggttttcttgg
gcgccaggaaccgcccaaacagaagcagagcaggactcccccatttctct
ctcctggctccgcccaagagggagccagcggagctcagctgtatggggag
gggggtggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_52918628_52919740
seq2: B6Ng01-300I23.b_43_1145 (reverse)

seq1  TAGTCTTCACTGCATAACAAAATTCCTACAACTTGGAAAATTAAAAACAG  50
      ||||||||| ||||||||||||||||||| |||||   |||  |||||||
seq2  TAGTCTTCA-TGCATAACAAAATTCCTAC-ACTTG--CAATCTAAAACAG  46

seq1  TTAATTATTTCTCTCAATTCTGTAGGTTCATTACAATAATAAACTGGCAT  100
      || || |||||| |  || ||||||  ||| ||| ||| ||| |||||||
seq2  TTCATGATTTCTGTTCATGCTGTAG--TCA-TAC-ATAGTAAGCTGGCAT  92

seq1  CATGCATGTAGCAGCCATCACCTAAGTAGTTGGCTGGGGCTAGAATGTGC  150
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  CATGCATGTAGCAGCCATCA-CTAAGTAGTTGGCT-GGGCTAGAATGTGC  140

seq1  TTTAGAGACTTCATT-CAAATATCAGCTGTCCCAATTGGAATCTTTCCTA  199
      ||||||||||||||| ||| ||||||||||||||||| | ||||||||||
seq2  TTTAGAGACTTCATTCCAATTATCAGCTGTCCCAATT-GTATCTTTCCTA  189

seq1  AGGGCAGTTGACTGGCATCGACTCATGTATCTACCACCTATCAGCTACCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGTTGACTGGCATCGACTCATGTATCTACCACCTATCAGCTACCA  239

seq1  TCTATCTATTGTGCATCTATCCACCTATGCATTATGTATATGGATGTGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATTGTGCATCTATCCACCTATGCATTATGTATATGGATGTGTC  289

seq1  TATCATATAGTATCTGGCACTTTCATACCTACCATAATATATTCACTTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATATAGTATCTGGCACTTTCATACCTACCATAATATATTCACTTTC  339

seq1  CTTTCTTTCTTCCTTCCTTTCTCCCTTGTTTATTCAGTTGAGCCTTGCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTCCTTCCTTTCTCCCTTGTTTATTCAGTTGAGCCTTGCTG  389

seq1  CCTTACCCAGAGGTTGGATCCCAACTAGGCAACTATAGAACCTACATAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCCAGAGGTTGGATCCCAACTAGGCAACTATAGAACCTACATAAC  439

seq1  TTCTAAAGTTATACACATTCCTTCTATCACTTTCTAATGATCATAGAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGTTATACACATTCCTTCTATCACTTTCTAATGATCATAGAAAG  489

seq1  GCATAGAACCAGGCCAAATTAGTGAGAAAAGAAGACACTTTGATCTATCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAACCAGGCCAAATTAGTGAGAAAAGAAGACACTTTGATCTATCA  539

seq1  ATTAGAAGAAAGACATATATGGATATATATGTGAGTATAAAATGGCAGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAGAAAGACATATATGGATATATATGTGAGTATAAAATGGCAGAT  589

seq1  AGACTTACAATCTTTTCTTTCACTCCATTTTCTCCCTGTCTTTCTTTCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTACAATCTTTTCTTTCACTCCATTTTCTCCCTGTCTTTCTTTCCT  639

seq1  TATTTTATATTTCAAATAAGTTAGACTACTTCCTTCGTGATAAGGGAGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATATTTCAAATAAGTTAGACTACTTCCTTCGTGATAAGGGAGCT  689

seq1  GCTAGTCATCATTTTCTTTAGGTATATTTATAACACAAGACATAGTTATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTCATCATTTTCTTTAGGTATATTTATAACACAAGACATAGTTATG  739

seq1  GAGAATGTACAGAACTTGAAATGCATGATAGAAATACTCTTGGATGTCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGTACAGAACTTGAAATGCATGATAGAAATACTCTTGGATGTCTG  789

seq1  AAACAGAGCTCTCTTGCCTTTTTAAACCAGCTTTCTCAACAATCACATCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGCTCTCTTGCCTTTTTAAACCAGCTTTCTCAACAATCACATCT  839

seq1  GTCTTTTTAACTAGGAGTAGGCTTCACAAAGTCAAAACTTGATGATGTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTTAACTAGGAGTAGGCTTCACAAAGTCAAAACTTGATGATGTAT  889

seq1  CTTGGTGCCAGAAGCACCATCCTTGTGTCAGACTGGGTCATATGTAATAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGCCAGAAGCACCATCCTTGTGTCAGACTGGGTCATATGTAATAA  939

seq1  CATGTAACAACACTGAGTGTTAACATACAACATTTTCCTAGTACTCAAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAACAACACTGAGTGTTAACATACAACATTTTCCTAGTACTCAAGA  989

seq1  GACTGCACAAAACGAACTGAGAATTCCAGCTCAGTTTGAGCTATGTATTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCACAAAACGAACTGAGAATTCCAGCTCAGTTTGAGCTATGTATTA  1039

seq1  AGTTGGAAGCCAGCAAAGACAGCATTGTAAAACTCAGTTTCCAATCAACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAAGCCAGCAAAGACAGCATTGTAAAACTCAGTTTCCAATCAACA  1089

seq1  ATCTTAATGAATTC  1113
      ||||||||||||||
seq2  ATCTTAATGAATTC  1103

seq1: chr17_52739508_52740317
seq2: B6Ng01-300I23.g_66_875

seq1  GAATTCCTGCAGTGGAGAAGGATGTGCAATAACGTGAATTGGTGTTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCAGTGGAGAAGGATGTGCAATAACGTGAATTGGTGTTCTTT  50

seq1  TGGTCCACCAGCAAAGAATTTTCCTTTAAGGAAAAGATAAAGTTTAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCACCAGCAAAGAATTTTCCTTTAAGGAAAAGATAAAGTTTAGAAC  100

seq1  CATTGCCTATCAGGACACATTTCTGCCTTTGATTCGAAGGTGACAAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCTATCAGGACACATTTCTGCCTTTGATTCGAAGGTGACAAAATA  150

seq1  CAAGAGGATTCAGCGTGCTTAGACTCCTGTGGTGATTAAGTCTTGATAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGATTCAGCGTGCTTAGACTCCTGTGGTGATTAAGTCTTGATAGG  200

seq1  GTAGTTTGGCCTCTAGTGCTACAAACACTTAACAGGAATATCAGTGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTGGCCTCTAGTGCTACAAACACTTAACAGGAATATCAGTGAGTG  250

seq1  TTTGAGCTGAGATTAGAGATCCTAGAACTCAAGACCCAAGATGAAAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCTGAGATTAGAGATCCTAGAACTCAAGACCCAAGATGAAAGATG  300

seq1  CATTCCTGAGAAAGACATCCGGGCAGAAAAAGGAAACAAGAGGCACTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTGAGAAAGACATCCGGGCAGAAAAAGGAAACAAGAGGCACTGTG  350

seq1  GTCCACTTACCAAGTTCAGTTTGGTGGGAGGCTGGGATCGAAGGTGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACTTACCAAGTTCAGTTTGGTGGGAGGCTGGGATCGAAGGTGAGTT  400

seq1  AAGGGCAGGGATGTTGTGCCTAGTTCTAGCCTTGACTTGTTTTGGATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAGGGATGTTGTGCCTAGTTCTAGCCTTGACTTGTTTTGGATACT  450

seq1  GGAGGAAAGACTACATTATGGGATGGTACTTGACTGACTTCTTTTGCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAAGACTACATTATGGGATGGTACTTGACTGACTTCTTTTGCCAC  500

seq1  TGAACCCAAATTGGCTTTTGGGTTTCCATTACTAAGCCTCGTATAGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCAAATTGGCTTTTGGGTTTCCATTACTAAGCCTCGTATAGTTTC  550

seq1  TTTCTAGCAAGCCAGGCCAGACTAAAGAGGAAAAAGTAGTTGATGTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGCAAGCCAGGCCAGACTAAAGAGGAAAAAGTAGTTGATGTTTTT  600

seq1  ACGCTCAGGCACACTTATAGTGGCTTACACATAAATTTCATGCTTAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCAGGCACACTTATAGTGGCTTACACATAAATTTCATGCTTAGCTT  650

seq1  CAAGCCACTTCTCACTCTTCCATTGGCAGAAGCGGTCTGGGTTTTCTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCACTTCTCACTCTTCCATTGGCAGAAGCGGTCTGGGTTTTCTTGG  700

seq1  GCGCCAGGAACCGCCCAAACAGAAGCAGAGCAGGGACTCCCCCATTTCTC  750
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCGCCAGGAACCGCCCAAACAGAAGCAGAGCA-GGACTCCCCCATTTCTC  749

seq1  TCTCCTGGCTCCGCCCAAGAGGGAGCCAGCGGAGCTCAGCTGTATGGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGGCTCCGCCCAAGAGGGAGCCAGCGGAGCTCAGCTGTATGGGGA  799

seq1  -GGGGGTGGGA  810
       ||||||||||
seq2  GGGGGGTGGGA  810