BAC Information

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BAC

Clone NameB6Ng01-301K13
Chromosome10 (Build37)17 (Build37)
Map Location 102,511,117 - 102,511,22563,607,653 - 63,608,745
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413, Cart1
Downstream geneLrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301K13.bB6Ng01-301K13.g
ACCGA095914GA095915
length7111,097
definitionB6Ng01-301K13.b B6Ng01-301K13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(102,511,117 - 102,511,225)(63,607,653 - 63,608,745)
sequence
gaattcattatgcgatatcttaccctggatttctgtgggtctctcttttg
ggagctttcctgaccttaaactttcaggttcacatcacttatgaaaccag
ggggaatttcttctgtttctctgaatatcagcttagttcctgtattcact
ctaaagttctcatgacaggactgtgaacacccttgagacaacaccatgtg
tgtcagggctatgtttggtttgggtgtgttttccctacgttttttagatg
ggtacttgctactgttttatcttaaagtctagagtttttcctctcttgac
ttcattgttctgtttagaacagtggttctcaacctgttggtcatgacccc
tctgggggctctaaggactctcactcttacagatatttacattgtgattc
gtaactaacaaaattacagttataaattaggaacaaaaataattttatgg
ttgagggtctcgtataacatgaggaattgtattaaaacagttgcgcttta
ggaaggtttagaaccactggcttaaaatggccagagacttgattttggtt
gttgattattcttctttggtctcacgtttacatttggtttttctgttaat
actcattgctttgctgacatcatttattttcctttctttctttctttctt
tctttctttctttctttctttctttctttctttctttctctctttctctc
tttctctcttt

gaattctctgctggccggaccctaggctgctgtgggaaaggctacaggaa
catggctgtaagtgaagaccactatttcaggacactggtatactgcctgc
ctcctttgctgtttttctctaaaggggattgtactggctagttttctgtc
aacttgacacagctggggttatcacagagaaaggagcttcagttggggaa
gtgcctccatgagatccagctgtaaggcattttctcaattagtgatcaag
ggggaaaggccccttgtgggtggaaccatctctgggctggtatcctgggt
tctataagagagcaggctgagcaagccaggggaagcaagccagtaaggaa
catccctctgtggcctctgcatcagctcctgcttcctgccctgtgtgagt
tccagtcctgacttccttggtgatgaacagcagtatggaagtgtaagccg
aataaaccctttcctccccaactgcttcttggtcatggtgtttgtgcagg
aatagaaaccctaagacagggaccacctaaaacatcatggtcaggcttca
agtttgaatatacattaccacacaggtgtctggtatcctgaaatgttcat
gtctctaagcaaatactctcacatttcccataaaacagctgtactgacag
gcacttaaaatacctgggatgtgtctaaatgtaacaagggaaaaattgag
ggagcaaacaaaaatattctcataatcttatataaagcctgactttaaag
taagtttgtgtgtttgtgtgtatgtgcttgtgtacacatatgtgcattga
gacttggaaagaaatccagtttttacatattttagcaaaatgctaagtgt
attttacatgttacctaaacatttctataaattctatattggtatttata
gacataaaatttaaaaatatattgactggaattaggtgaattctgatcaa
gcaatttcattgaaaatggaatgaactcttcctgcagtcctgacctcagc
agctttaacttagatgctaaagaagattaagtgcagtcttataggttcag
actagcccttgaattcatctgttcctcgctgcccctgcctatgaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_102511117_102511225
seq2: B6Ng01-301K13.b_675_757 (reverse)

seq1  AAAGACAGAAAGAGAGAAAGAGAGAGAGAGAAAGAAAGGAAGGAAGGAAG  50
              ||||||||||||||||| ||||                  ||
seq2  --------AAAGAGAGAAAGAGAGAAAGAG------------------AG  24

seq1  GAAGGAAGGAAGGAAGGAAGGAAGAAAGGAAGAAAGAAAGAAAGAAAGAA  100
       ||| ||| ||| ||| ||| ||||||| |||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  74

seq1  AGAAAGGAA  109
      |||||||||
seq2  AGAAAGGAA  83


seq1: chr17_63607653_63608745
seq2: B6Ng01-301K13.g_68_1164

seq1  GAATTCTCTGCTGGCCGGACCCTAGGCTGCTGTGGGAAAGGCTACAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCTGGCCGGACCCTAGGCTGCTGTGGGAAAGGCTACAGGAA  50

seq1  CATGGCTGTAAGTGAAGACCACTATTTCAGGACACTGGTATACTGCCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTGTAAGTGAAGACCACTATTTCAGGACACTGGTATACTGCCTGC  100

seq1  CTCCTTTGCTGTTTTTCTCTAAAGGGGATTGTACTGGCTAGTTTTCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTGCTGTTTTTCTCTAAAGGGGATTGTACTGGCTAGTTTTCTGTC  150

seq1  AACTTGACACAGCTGGGGTTATCACAGAGAAAGGAGCTTCAGTTGGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGACACAGCTGGGGTTATCACAGAGAAAGGAGCTTCAGTTGGGGAA  200

seq1  GTGCCTCCATGAGATCCAGCTGTAAGGCATTTTCTCAATTAGTGATCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCCATGAGATCCAGCTGTAAGGCATTTTCTCAATTAGTGATCAAG  250

seq1  GGGGAAAGGCCCCTTGTGGGTGGAACCATCTCTGGGCTGGTATCCTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAGGCCCCTTGTGGGTGGAACCATCTCTGGGCTGGTATCCTGGGT  300

seq1  TCTATAAGAGAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAGAGAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAGGAA  350

seq1  CATCCCTCTGTGGCCTCTGCATCAGCTCCTGCTTCCTGCCCTGTGTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCTGTGGCCTCTGCATCAGCTCCTGCTTCCTGCCCTGTGTGAGT  400

seq1  TCCAGTCCTGACTTCCTTGGTGATGAACAGCAGTATGGAAGTGTAAGCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCCTGACTTCCTTGGTGATGAACAGCAGTATGGAAGTGTAAGCCG  450

seq1  AATAAACCCTTTCCTCCCCAACTGCTTCTTGGTCATGGTGTTTGTGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCCTTTCCTCCCCAACTGCTTCTTGGTCATGGTGTTTGTGCAGG  500

seq1  AATAGAAACCCTAAGACAGGGACCACCTAAAACATCATGGTCAGGCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAACCCTAAGACAGGGACCACCTAAAACATCATGGTCAGGCTTCA  550

seq1  AGTTTGAATATACATTACCACACAGGTGTCTGGTATCCTGAAATGTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAATATACATTACCACACAGGTGTCTGGTATCCTGAAATGTTCAT  600

seq1  GTCTCTAAGCAAATACTCTCACATTTCCCATAAAACAGCTGTACTGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTAAGCAAATACTCTCACATTTCCCATAAAACAGCTGTACTGACAG  650

seq1  GCACTTAAAATACCTGGGATGTGTCTAAATGTAACAAGGGAAAAATTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTAAAATACCTGGGATGTGTCTAAATGTAACAAGGGAAAAATTGAG  700

seq1  GGAGCAAACAAAAATATTCTCATAATCTTATATAAAGCCTGACTTTAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAAACAAAAATATTCTCATAATCTTATATAAAGCCTGACTTTAAAG  750

seq1  TAAGTTTGTGTGTTTGTGTGTATGTGCTTGTGTACACATATGTGCATTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTGTGTGTTTGTGTGTATGTGCTTGTGTACACATATGTGCATTGA  800

seq1  GACTTGGAAAGAAATCCAGTTTTTACATA-TTTAGCAAAATGCTAAGTGT  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GACTTGGAAAGAAATCCAGTTTTTACATATTTTAGCAAAATGCTAAGTGT  850

seq1  ATTTTACATGTTACCTAAACATTTCTATAAATTCTATA-TGGTATTTATA  898
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTTTACATGTTACCTAAACATTTCTATAAATTCTATATTGGTATTTATA  900

seq1  GACATAAAA-TTAAAAATATATTGACTGGAATTA-GTGAATTCTGATCAA  946
      ||||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  GACATAAAATTTAAAAATATATTGACTGGAATTAGGTGAATTCTGATCAA  950

seq1  GCAATTTCATTGAAAATGGAATGAACTCTTCCTGCAGTCCTGA-CTCAGC  995
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCAATTTCATTGAAAATGGAATGAACTCTTCCTGCAGTCCTGACCTCAGC  1000

seq1  AG-TTTTACTAAGATGCTAAAGAAGATTAAGTGCAAGTCCTTATAGGTTC  1044
      || ||| ||| ||||||||||||||||||||||| ||| |||||||||||
seq2  AGCTTTAACTTAGATGCTAAAGAAGATTAAGTGC-AGT-CTTATAGGTTC  1048

seq1  AGACTAGCCTTTGATTTCATCTGTCCTTCGCTGCCCCTGCTAATGACCC  1093
      ||||||||| |||| ||||||||| | |||||||||||||  |||||||
seq2  AGACTAGCCCTTGAATTCATCTGTTCCTCGCTGCCCCTGCCTATGACCC  1097


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