BAC Information

Click to search

BAC

Clone NameB6Ng01-302J01
Chromosome17 (Build37)
Map Location 9,603,471 - 9,734,210
singlet/doubletdoublet
Overlap geneEG667170
Upstream geneT2, T, LOC100040817, Pde10a, 1700010I14Rik, EG667165, LOC666143
Downstream gene4932702K14Rik, Qk, LOC675815, Pacrg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302J01.bB6Ng01-302J01.g
ACCGA096581GA096582
length1,084421
definitionB6Ng01-302J01.b B6Ng01-302J01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,603,471 - 9,604,566)(9,733,784 - 9,734,210)
sequence
gaattctgcctcccctctgcccactctcagtggtctttcttgttttggca
aggaggagagaaaagaatgaaacaaccattgcctaattacttatttttat
tatccggcttcattatatgctgctggaccacggggaattgatttcactaa
tccattttacccttttggctgtgggagggtgggaaagagcaccaggagaa
cagtggagatttaataatacccactcaaaattctactgtacagataaacg
atgataaattagatactgatcatcttcctgggcaagggccctgaacatct
ccattattcacctctcggtcccctgcctactccctcctttcttggttcag
cagcagccaatatgctttacaccttatgtttagctcacagctatcattcc
ataagctctgccagtggtggtatccattctcatgtctgtcactaggacac
tcacagatcttaacacactctctttgtctccatccctttgctggagctgg
atgcctccacttaacagttccatgctaatgtgggtctcagctcccatctg
taattacctgtgtttgataaggtgtgtaagctcagcttcacaagtgcctc
tgacctacaatgcagagccagcagtgtagtgtgtatagctgcagtcatat
ataaccctcacaaagtagatggcatatccttcttaaaactgaagtcatca
tctttgttgtcaccatcataaccattaccatcaccatcaccactctttaa
caatcctggaagattaataatgctcatgtcatgtggtcctcccttctttc
tggggtggaggactgttggccaccagcccacaaaggacaaagggagcaga
gtcaaagaacagggttaggacagtctgtaagacagaaatgacagacttcc
cggatcagctcagctttatttagggtgaataaaaggctatatagttcctg
ggaagagcatagggtttactagggtagtatcattggctacagcttaggta
gtgagatgcctcatttgcatgagaggcatccagattctatcagagaagta
agctgaacttgtatcttacaagcttactgacact

catttcaataaaatcttacaaaggaaaggaatgaaaacatcatgtactag
aggaagggtaagactctccacctccctctcttgaccttcaaaaacatact
ttgtgatattgagacaccaggtctctccctacatgacaggaccatcgcac
acatgaatctgtagtgattgtgacagggtgcacaagaccttcacaagatc
aagacaggcaaagtagcagctgaatgggagcttcatgaatggcctctcag
aagaggccatgatgcttctgggagatggagaaccagttttcttaaggaat
gcagtccctaaatggctaccaatactccaatatagggcatctccacactc
atgctcattcaggcagcactgaggattctcagcaggcattaaaacaaaag
agaggggggtgggtggaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_9603471_9604566
seq2: B6Ng01-302J01.b_45_1128

seq1  GAATTCTGCCTCCCCTCTGCCCACTCTCAGTGGTCTTTCTTGTTTTGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTCCCCTCTGCCCACTCTCAGTGGTCTTTCTTGTTTTGGCA  50

seq1  AGGAGGAGAGAAAAGAATGAAACAACCATTGCCTAATTACTTATTTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGAGAAAAGAATGAAACAACCATTGCCTAATTACTTATTTTTAT  100

seq1  TATCCGGCTTCATTATATGCTGCTGGACCACGGGGAATTGATTTCACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCGGCTTCATTATATGCTGCTGGACCACGGGGAATTGATTTCACTAA  150

seq1  TCCATTTTACCCTTTTGGCTGTGGGAGGGTGGGAAAGAGCACCAGGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTACCCTTTTGGCTGTGGGAGGGTGGGAAAGAGCACCAGGAGAA  200

seq1  CAGTGGAGATTTAATAATACCCACTCAAAATTCTACTGTACAGATAAACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAGATTTAATAATACCCACTCAAAATTCTACTGTACAGATAAACG  250

seq1  ATGATAAATTAGATACTGATCATCTTCCTGGGCAAGGGCCCTGAACATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAATTAGATACTGATCATCTTCCTGGGCAAGGGCCCTGAACATCT  300

seq1  CCATTATTCACCTCTCGGTCCCCTGCCTACTCCCTCCTTTCTTGGTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATTCACCTCTCGGTCCCCTGCCTACTCCCTCCTTTCTTGGTTCAG  350

seq1  CAGCAGCCAATATGCTTTACACCTTATGTTTAGCTCACAGCTATCATTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCAATATGCTTTACACCTTATGTTTAGCTCACAGCTATCATTCC  400

seq1  ATAAGCTCTGCCAGTGGTGGTATCCATTCTCATGTCTGTCACTAGGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTCTGCCAGTGGTGGTATCCATTCTCATGTCTGTCACTAGGACAC  450

seq1  TCACAGATCTTAACACACTCTCTTTGTCTCCATCCCTTTGCTGGAGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGATCTTAACACACTCTCTTTGTCTCCATCCCTTTGCTGGAGCTGG  500

seq1  ATGCCTCCACTTAACAGTTCCATGCTAATGTGGGTCTCAGCTCCCATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCCACTTAACAGTTCCATGCTAATGTGGGTCTCAGCTCCCATCTG  550

seq1  TAATTACCTGTGTTTGATAAGGTGTGTAAGCTCAGCTTCACAAGTGCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACCTGTGTTTGATAAGGTGTGTAAGCTCAGCTTCACAAGTGCCTC  600

seq1  TGACCTACAATGCAGAGCCAGCAGTGTAGTGTGTATAGCTGCAGTCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTACAATGCAGAGCCAGCAGTGTAGTGTGTATAGCTGCAGTCATAT  650

seq1  ATAACCCTCACAAAGTAGATGGCATATCCTTCTTAAAACTGAAGTCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCTCACAAAGTAGATGGCATATCCTTCTTAAAACTGAAGTCATCA  700

seq1  TCTTTGTTGTCACCATCATAACCATTACCATCACCATCACCACTCTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTGTCACCATCATAACCATTACCATCACCATCACCACTCTTTAA  750

seq1  CAATCCTGGAAGATTAATAATGCTCATGTCATGTGGTCCTCCCTTCTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTGGAAGATTAATAATGCTCATGTCATGTGGTCCTCCCTTCTTTC  800

seq1  TGGGGTGGAGGACTGTTGGCCACCAGCCCAC-AAGGACAAAGGGAGCAGA  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGGGTGGAGGACTGTTGGCCACCAGCCCACAAAGGACAAAGGGAGCAGA  850

seq1  GTCAAAGAACAGGGTTAGGACAGTCTGTAAGACAGAAATGACAGACTT-C  898
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTCAAAGAACAGGGTTAGGACAGTCTGTAAGACAGAAATGACAGACTTCC  900

seq1  CGGATCAGCTCAGCTTTATTTAGGGTGAATAAAAGGCTATATAGTTCCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATCAGCTCAGCTTTATTTAGGGTGAATAAAAGGCTATATAGTTCCTG  950

seq1  GGAAGAGCATAGGGGTTACTAGGGTAGGTATCATTGGCTACAGCTTAGGG  998
      |||||||||||||| ||||||||||| |||||||||||||||||||| ||
seq2  GGAAGAGCATAGGGTTTACTAGGGTA-GTATCATTGGCTACAGCTTA-GG  998

seq1  TAGTGAAGAATGCCTCATTTGCATGGAGAGGCATCCCAGGAATTCTTATC  1048
      ||||||   ||||||||||||||| ||||||||| ||||  |||| ||||
seq2  TAGTGA--GATGCCTCATTTGCAT-GAGAGGCAT-CCAG--ATTC-TATC  1041

seq1  AGGAGAAGGTAAGCTGAACCTGTAATCTTACCAAGGCTACCTGACACT  1096
      | ||||| ||||||||||| ||| |||||||  | |||  ||||||||
seq2  A-GAGAA-GTAAGCTGAACTTGT-ATCTTAC--AAGCTTACTGACACT  1084


seq1: chr17_9733784_9734210
seq2: B6Ng01-302J01.g_67_493 (reverse)

seq1  CCCTTCCACCCACCCCCCTCTCTTTTGTTTTAATGCCTGCTGAGAATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCACCCACCCCCCTCTCTTTTGTTTTAATGCCTGCTGAGAATCCT  50

seq1  CAGTGCTGCCTGAATGAGCATGAGTGTGGAGATGCCCTATATTGGAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGCCTGAATGAGCATGAGTGTGGAGATGCCCTATATTGGAGTAT  100

seq1  TGGTAGCCATTTAGGGACTGCATTCCTTAAGAAAACTGGTTCTCCATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCCATTTAGGGACTGCATTCCTTAAGAAAACTGGTTCTCCATCTC  150

seq1  CCAGAAGCATCATGGCCTCTTCTGAGAGGCCATTCATGAAGCTCCCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCATCATGGCCTCTTCTGAGAGGCCATTCATGAAGCTCCCATTC  200

seq1  AGCTGCTACTTTGCCTGTCTTGATCTTGTGAAGGTCTTGTGCACCCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTACTTTGCCTGTCTTGATCTTGTGAAGGTCTTGTGCACCCTGTC  250

seq1  ACAATCACTACAGATTCATGTGTGCGATGGTCCTGTCATGTAGGGAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCACTACAGATTCATGTGTGCGATGGTCCTGTCATGTAGGGAGAGA  300

seq1  CCTGGTGTCTCAATATCACAAAGTATGTTTTTGAAGGTCAAGAGAGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGTCTCAATATCACAAAGTATGTTTTTGAAGGTCAAGAGAGGGAG  350

seq1  GTGGAGAGTCTTACCCTTCCTCTAGTACATGATGTTTTCATTCCTTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAGTCTTACCCTTCCTCTAGTACATGATGTTTTCATTCCTTTCCT  400

seq1  TTGTAAGATTTTATTGAAATGGAATTC  427
      |||||||||||||||||||||||||||
seq2  TTGTAAGATTTTATTGAAATGGAATTC  427


| Home | SequenceCutter | Blast | Download |