BAC Information

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BAC

Clone NameB6Ng01-303L20
Chromosome17 (Build37)
Map Location 42,542,075 - 42,543,217
singlet/doubletsinglet
Overlap geneLOC627626
Upstream genenone
Downstream geneOpn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110, Gpr116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303L20.bB6Ng01-303L20.g
ACCGA097467GA097468
length6991,125
definitionB6Ng01-303L20.b B6Ng01-303L20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttgaaattcttaggcaaatagatggaactagaaaatatcatcct
gagtgaggtaacccaatcacaaaataacacacatggtttgcactcactga
taagtgggtattagcccaaatgcttggaatacccaagatataattcacag
accacataaagctcaagaaggaagaccaaagtgtggatgcttcagtcctt
cttagaaaggggaacaaaatactcatgggagcaaatacagagacaaagtg
tggagcagagactgaaagaaaggccatccagagactgccacacctgggga
tccatcccactaaagtcaccaaacccagacacaattgtggatgccaagaa
gtgcatgctgacagaagcctaataaaactgtgtcctgagaggttctacaa
gagccttacaaatacagaggtggatgcttgcagctaaccactggactgag
catggggttcccattggggtccccaatagaggagttacagaaaggactga
aggagctgaaggatttgcaaccccataggaaaaacaatatgaaccctccc
cccagagctgtgtctctagttacatatgtagcagaggatggcttagttgt
ccatcaatgggaggagaggccctttgtcttgagaagattatatgccccag
tactggcgaataccagggacaggaagtgggagtgggtgggatggggagc

gaattcagtggacttataaaacaagcacatgaagttgggaggggaaagtt
gtgacaaggaaaggggaggaattaggggagatacaacgggcatatgttcg
atcaaagcatgatttatatatatttatatatataaatatatataaaacaa
tatatattattatatatatctcaaacaataaaaaagatttgaagtatcag
ttcatcatacacacacagacacaaaacaaccaatcaagcaaactaatcta
taactcttttattgcaccatggcccttattctatactccatttcttgatg
ttattggatatatcttgtttccatcatatgcccgctggaactgtacacat
tttgtcgcagactgtgggctaattatatagttattggataaatgaatgac
taatccacttgggaagtgttttccattaaggcttccaacactaatgcttt
atcctgatgtcggcaggtgtttatacaaatgctaatgttttccttcctgg
tttcataacatttgtatttatagcatgtttgctccatgggcttatcatct
cctggtggtttccaagctatttatcccacctgggtttggagctatcacgt
ttgtttagcgaatctgcctttagtgcttcaccccaatgaaggacaacttc
atgcatgtatccaagcaagactcactgctgcatcaatatgtgcctgttcc
taattgtgttactcctctcatcctttagttaaaccagaagttgtcttgag
ccagggcattgtgagactagggtgcttcatgtggccctgccttcacgtcg
gcaatgtcatttagagactgttatagagcacaccactccaaaattccttt
gagtatttcctgtgggcaagtgtttcctgagatgtgtttttgatgtcatt
gctcagttgtgaatggagatggtaaactcctgggaaacctcccttaagca
aaggtcagctaagaacagtttacttctatttccttctcatgagtaggcaa
agtacattctatcttcctagagcaagcatgaatccttacagctttcacag
atttccactcccacatgtgaatgggaaatgatctccatgtcgctggtagc
tcgctaaaataccttcatcatacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_42542075_42543217
seq2: B6Ng01-303L20.g_65_1189 (reverse)

seq1  ATGTATTGATGAAGTGATATTTTAGCAGACTACCAGCGACATGGGAGAAT  50
      ||||| |||||||  | |||||||||   ||||||||||||| |||||  
seq2  ATGTA-TGATGAA--GGTATTTTAGCGAGCTACCAGCGACAT-GGAGA--  44

seq1  TCATTTCCCATTTCACATGTGGGAGTGGAAATCTGTGAAGGCTGTAAGGA  100
      |||||||||| |||||||||||||||||||||||||||| ||||||||| 
seq2  TCATTTCCCA-TTCACATGTGGGAGTGGAAATCTGTGAAAGCTGTAAGG-  92

seq1  ATTCATGCTTTGCTCTAGGGAAGATAGAATTGTACCTTTGGCCTTACTCA  150
      |||||||| |||||||| ||||||||||| |||| |||||  | ||||||
seq2  ATTCATGC-TTGCTCTA-GGAAGATAGAA-TGTA-CTTTG--CCTACTCA  136

seq1  TGAGAAGGAAATAGAAGTAAACTTGTTCCTTAGCTGACCTTTGCTTAAGG  200
      |||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  TGAGAAGGAAATAGAAGTAAAC-TGTT-CTTAGCTGACCTTTGCTTAAGG  184

seq1  GAGGTTTCCCAGGAGTTTACCATCTCCATTCACAACCTGAGCAAATGACA  250
      ||||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  GAGGTTTCCCAGGAGTTTACCATCTCCATTCACAA-CTGAGC-AATGACA  232

seq1  TCAAAAACACATCTCAGGAAACACTTGCCCACAGGAAATACTCAAAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAACACATCTCAGGAAACACTTGCCCACAGGAAATACTCAAAGGAA  282

seq1  TTTTGGAGTGGTGTGCTCTATAACAGTCTCTAAATGACATTGCCGACGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGTGGTGTGCTCTATAACAGTCTCTAAATGACATTGCCGACGTG  332

seq1  AAGGCAGGGCCACATGAAGCACCCTAGTCTCACAATGCCCTGGCTCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGGCCACATGAAGCACCCTAGTCTCACAATGCCCTGGCTCAAGA  382

seq1  CAACTTCTGGTTTAACTAAAGGATGAGAGGAGTAACACAATTAGGAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCTGGTTTAACTAAAGGATGAGAGGAGTAACACAATTAGGAACAG  432

seq1  GCACATATTGATGCAGCAGTGAGTCTTGCTTGGATACATGCATGAAGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATATTGATGCAGCAGTGAGTCTTGCTTGGATACATGCATGAAGTTG  482

seq1  TCCTTCATTGGGGTGAAGCACTAAAGGCAGATTCGCTAAACAAACGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCATTGGGGTGAAGCACTAAAGGCAGATTCGCTAAACAAACGTGAT  532

seq1  AGCTCCAAACCCAGGTGGGATAAATAGCTAGGAAACCACCAGGAGATGAT  600
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCTCCAAACCCAGGTGGGATAAATAGCTTGGAAACCACCAGGAGATGAT  582

seq1  AAGCCCATGGAGCAAACATGCTATAAATACAAATGTTATGAAACCAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCATGGAGCAAACATGCTATAAATACAAATGTTATGAAACCAGGAA  632

seq1  GGAAAACATTAGCATTTGTATAAACACCTGCCGACATCAGGATAAAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACATTAGCATTTGTATAAACACCTGCCGACATCAGGATAAAGCAT  682

seq1  TAGTGTTGGAAGCCTTAATGGAAAACACTTCCCAAGTGGATTAGTCATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTGGAAGCCTTAATGGAAAACACTTCCCAAGTGGATTAGTCATTC  732

seq1  ATTTATCCAATAACTATATAATTAGCCCACAGTCTGCGACAAAATGTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCCAATAACTATATAATTAGCCCACAGTCTGCGACAAAATGTGTA  782

seq1  CAGTTCCAGCGGGCATATGATGGAAACAAGATATATCCAATAACATCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCAGCGGGCATATGATGGAAACAAGATATATCCAATAACATCAAG  832

seq1  AAATGGAGTATAGAATAAGGGCCATGGTGCAATAAAAGAGTTATAGATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGTATAGAATAAGGGCCATGGTGCAATAAAAGAGTTATAGATTA  882

seq1  GTTTGCTTGATTGGTTGTTTTGTGTCTGTGTGTGTATGATGAACTGATAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTGATTGGTTGTTTTGTGTCTGTGTGTGTATGATGAACTGATAC  932

seq1  TTCAAATCTTTTTTATTGTTTGAGATATATATAATAATATATATTGTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATCTTTTTTATTGTTTGAGATATATATAATAATATATATTGTTTT  982

seq1  ATATATATTTATATATATAAATATATATAAATCATGCTTTGATCGAACAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTTATATATATAAATATATATAAATCATGCTTTGATCGAACAT  1032

seq1  ATGCCCGTTGTATCTCCCCTAATTCCTCCCCTTTCCTTGTCACAACTTTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCGTTGTATCTCCCCTAATTCCTCCCCTTTCCTTGTCACAACTTTC  1082

seq1  CCCTCCCAACTTCATGTGCTTGTTTTATAAGTCCACTGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCAACTTCATGTGCTTGTTTTATAAGTCCACTGAATTC  1125


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