BAC Information

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BAC

Clone NameB6Ng01-304D04
Chromosome17 (Build37)
Map Location 25,475,552 - 25,636,936
singlet/doubletdoublet
Overlap geneTpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5
Upstream geneAbca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472
Downstream geneLOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304D04.bB6Ng01-304D04.g
ACCGA097813GA097814
length917439
definitionB6Ng01-304D04.b B6Ng01-304D04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,636,023 - 25,636,936)(25,475,552 - 25,475,996)
sequence
gaattccataaggtgaggaatgagtcttaccacacacccctcagtggcta
gcctacagttagtcctcagatgagacgctgagagtgaggtctactctggt
ctggcctgtgccccactagtgctatccctaggatggctctatggccaaag
gcaaccctatgctctgcctgcagcacctcaggttcagatggcagccagag
gccagcacctgtcactcttcattccatgtcccataagaggaaaattctct
gagaaggagccaacctctctgtggctaagcaaggtcgtgagggtgtgtgt
gctggcgtttcaggtgtgggtagccttggtctttgccagctcagagacta
ggaagctggaaacatgggaccctgcacactctgttggtgtgaggtgtggt
caagtggggataagcctgaatagggttttgttggagatctgggctattgt
ctctgttgtcccagttggaggagtctaggcagatgttctgtctagaagca
gcctcttgagactgcctttgctggtctctggccaaactcaactggttact
ctgtctgtctcccagtcttggacatggtttcactaagcagtgtgggtaaa
tgaggggctggtgaggagcagcagttgggaggagaatcacaaatggggac
agtggctggaatggagtagaggcagaactgtggatcagaacaaggagtca
cattgggaccagcaccagtgtcatggctccctcgctcagccacagagctt
cttgctaccctggggccttcaatcctctgacttctgcctaagtctcttcc
tcagtagaccacactgcatttggagatggttcccagcctcctgcttgtct
tttattacagtctaaaatttcttatttttattatttttatttatgtgtac
ggtgttgtacctgtgtg
tcagaaagctgtcctccctgacatggacagtgacagcccacaaagagctg
acaggtcacaaaggagagggtacgagagaaggctccctttgtacatgagt
ggacattgcggggtggctagggtgtgcactgatagctttctctctgtgtg
ggcaggctggctgtatagagtcaatgccggtcttcctcaggaacctaaca
ccttagctactgttccattgctgtgaagagacaccatgacaaaggcaact
catgagataaggcatttaattggggacttggttacagttttagagggtga
gcccatcattatttctgcacaaagaagaccatggtgctggagcagtagct
gagagctttgcatcctgatgtacaggcagcagggagagagagagagagag
agagagagagagagagagagagagagagagagagagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_25636023_25636936
seq2: B6Ng01-304D04.b_48_964 (reverse)

seq1  CACACAGGTACAACACCGTACACATAAAT-AAAATAATAAAAATAAGAAA  49
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CACACAGGTACAACACCGTACACATAAATAAAAATAATAAAAATAAGAAA  50

seq1  TTTTAGACTGTAAT-AAAGACAAGCAGGAGGCTGGGAACCATCTCC-AAT  97
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  TTTTAGACTGTAATAAAAGACAAGCAGGAGGCTGGGAACCATCTCCAAAT  100

seq1  GCAGTGTGGTCTACTGAGGAAGAGACTTAGGCAGAAGTCAGAGGATTGAA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTGGTCTACTGAGGAAGAGACTTAGGCAGAAGTCAGAGGATTGAA  150

seq1  GGCCCCAGGGTAGCAAGAAGCTCTGTGGCTGAGCGAGGGAGCCATGACAC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCAGGGTAGCAAGAAGCTCTGTGGCTGAGCGAGGGAGCCATGACAC  200

seq1  TGGTGCTGGTCCCAATGTGACTCCTTGTTCTGATCCACAGTTCTGCCTCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTGGTCCCAATGTGACTCCTTGTTCTGATCCACAGTTCTGCCTCT  250

seq1  ACTCCATTCCAGCCACTGTCCCCATTTGTGATTCTCCTCCCAACTGCTGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATTCCAGCCACTGTCCCCATTTGTGATTCTCCTCCCAACTGCTGC  300

seq1  TCCTCACCAGCCCCTCATTTACCCACACTGCTTAGTGAAACCATGTCCAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACCAGCCCCTCATTTACCCACACTGCTTAGTGAAACCATGTCCAA  350

seq1  GACTGGGAGACAGACAGAGTAACCAGTTGAGTTTGGCCAGAGACCAGCAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGAGACAGACAGAGTAACCAGTTGAGTTTGGCCAGAGACCAGCAA  400

seq1  AGGCAGTCTCAAGAGGCTGCTTCTAGACAGAACATCTGCCTAGACTCCTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTCTCAAGAGGCTGCTTCTAGACAGAACATCTGCCTAGACTCCTC  450

seq1  CAACTGGGACAACAGAGACAATAGCCCAGATCTCCAACAAAACCCTATTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGGACAACAGAGACAATAGCCCAGATCTCCAACAAAACCCTATTC  500

seq1  AGGCTTATCCCCACTTGACCACACCTCACACCAACAGAGTGTGCAGGGTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTATCCCCACTTGACCACACCTCACACCAACAGAGTGTGCAGGGTC  550

seq1  CCATGTTTCCAGCTTCCTAGTCTCTGAGCTGGCAAAGACCAAGGCTACCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTTCCAGCTTCCTAGTCTCTGAGCTGGCAAAGACCAAGGCTACCC  600

seq1  ACACCTGAAACGCCAGCACACACACCCTCACGACCTTGCTTAGCCACAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGAAACGCCAGCACACACACCCTCACGACCTTGCTTAGCCACAGA  650

seq1  GAGGTTGGCTCCTTCTCAGAGAATTTTCCTCTTATGGGACATGGAATGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGGCTCCTTCTCAGAGAATTTTCCTCTTATGGGACATGGAATGAA  700

seq1  GAGTGACAGGTGCTGGCCTCTGGCTGCCATCTGAACCTGAGGTGCTGCAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACAGGTGCTGGCCTCTGGCTGCCATCTGAACCTGAGGTGCTGCAG  750

seq1  GCAGAGCATAGGGTTGCCTTTGGCCATAGAGCCATCCTAGGGATAGCACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCATAGGGTTGCCTTTGGCCATAGAGCCATCCTAGGGATAGCACT  800

seq1  AGTGGGGCACAGGCCAGACCAGAGTAGACCTCACTCTCAGCGTCTCATCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGCACAGGCCAGACCAGAGTAGACCTCACTCTCAGCGTCTCATCT  850

seq1  GAGGACTAACTGTAGGCTAGCCACTGAGGGGTGTGTGGTAAGACTCATTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTAACTGTAGGCTAGCCACTGAGGGGTGTGTGGTAAGACTCATTC  900

seq1  CTCACCTTATGGAATTC  914
      |||||||||||||||||
seq2  CTCACCTTATGGAATTC  917

seq1: chr17_25475552_25475996
seq2: B6Ng01-304D04.g_67_511

seq1  GAATTCTCAGAAAGCTGTCCTCCCTGACATGGACAGTGACAGCCCACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAAAGCTGTCCTCCCTGACATGGACAGTGACAGCCCACAAA  50

seq1  GAGCTGACAGGTCACAAAGGAGAGGGTACGAGAGAAGGCTCCCTTTGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGACAGGTCACAAAGGAGAGGGTACGAGAGAAGGCTCCCTTTGTAC  100

seq1  ATGAGTGGACATTGCGGGGTGGCTAGGGTGTGCACTGATAGCTTTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGGACATTGCGGGGTGGCTAGGGTGTGCACTGATAGCTTTCTCTC  150

seq1  TGTGTGGGCAGGCTGGCTGTATAGAGTCAATGCCGGTCTTCCTCAGGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGGCAGGCTGGCTGTATAGAGTCAATGCCGGTCTTCCTCAGGAAC  200

seq1  CTAACACCTTAGCTACTGTTCCATTGCTGTGAAGAGACACCATGACAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACCTTAGCTACTGTTCCATTGCTGTGAAGAGACACCATGACAAAG  250

seq1  GCAACTCATGAGATAAGGCATTTAATTGGGGACTTGGTTACAGTTTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCATGAGATAAGGCATTTAATTGGGGACTTGGTTACAGTTTTAGA  300

seq1  GGGTGAGCCCATCATTATTTCTGCACAAAGAAGACCATGGTGCTGGAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGCCCATCATTATTTCTGCACAAAGAAGACCATGGTGCTGGAGCA  350

seq1  GTAGCTGAGAGCTTTGCATCCTGATGTACAGGCAGCAGGGAGAGAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGAGAGCTTTGCATCCTGATGTACAGGCAGCAGGGAGAGAGAGAG  400

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAG  445
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAG  445