BAC Information

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BAC

Clone NameB6Ng01-304N08
Chromosome16 (Build37)17 (Build37)
Map Location 60,630,061 - 60,630,42793,967,872 - 93,968,831
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneArl6, Epha6, LOC100043804, EG668168, LOC668170
Downstream geneLOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304N08.bB6Ng01-304N08.g
ACCGA098277GA098278
length803977
definitionB6Ng01-304N08.b B6Ng01-304N08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,630,061 - 60,630,427)(93,967,872 - 93,968,831)
sequence
gaattctttttttttttaatatatatatatatatatatttatttttattt
tttattagatagtttctttatttacatttcaaatgttatcaccttcccta
gtttcccctctgaaaatcccctatcctctctccctctctctgttccccaa
cccactcactcctgcttcctggcccaggcaatcccctatgctggggggtc
aagaaccttcacaggaccaagggtctctcctcccattgataaccgactag
gccatcctctgctacatatgcagttagagtcaggaatcatgtgttttctt
tgattggtggtttagttccagggagctctggggttagtgattagttcata
ttgttattcctcctaggggggctgcaaaccccttcagctccttgggtact
ttctctagctcattcattggggaccctgtgctctgcctaatagatgactg
tgagcatccacttctgtattagtcaggggcactggcagagcctcccagga
gacagctatatcaggctcctatcagcaagactcttgttggcatttgcaat
agtgtctgggtttagtgattgtttatgggatggatccccaggtggggcaa
tttctggttggtcatttccttcattctctgctgcaactttgtctcagtaa
ctctttccgtggctattttattcccccttctaagaaaggatcaaagtgtc
tacactttgctcttccttcttcttgagtttacagtgaattctttatagaa
gagtatcttctaaaacaatagtccatattataattaattctgtaaaggtt
gtt
gaattcttgtgcttggtaatgttggaagactttggatgttagttacaaga
ccctttcattcctccaggcagccatcaaagttaagcagttaataaaagcc
tggctgcagctaatgttggaaagcatctgttcacagctgctggaggagtt
gttctcaattaaaatttgtaataattatttgtacagtcaacatcttctgt
agctaaattagtctggtttgggtcaaaactaatttgaaacgatagcacgc
cttttcatatctcgtattttactaaatggcttctccctttgtggtttgtg
ataaatcaagacagaacatatttaatataaggctcaattgatataaaagc
tgatggagcccattttctatattatcccttatttgaaatgcatatttgtt
ttagcagagatctggaacaaatttacaaaagcatgacatttgcacaaaca
catgtttctctattagagaaatgacaatctcgaacaaatgttatagaaaa
tttgactatgtacatgtggaagactgaatattggcctcatatgccatcct
tttaaacaaaagccaacttagaatggacctgaaattctgaaattatcagg
taaataaaaaacacagaacattttaaatattgaatcagagaaaatttttt
tttcttgtgagaaacacaacagtccaggaaacaaaagcaaacgccaataa
gtgggattatattaaacaaaaatgtttcagatcccaaagaaaatgagagc
tctgggaggtctgattggttgatattgttgttcttcctatgagttgcaaa
caccttcagctctttcactcctttctctaactcctcttttgggtaccctg
cgctcagtccaatggttagctgcaagcatctgcctctgtatttgttaggc
tctggcagagcctctcaggggacagcaatatcaagctcctgtcagcaagc
aattggcacctgcatatgtctggattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_60630061_60630427
seq2: B6Ng01-304N08.b_83_508 (reverse)

seq1  AGTGGATGCTCACAGTCATCTATAAGATGGAACACAGGGCCCTCAATAGA  50
      ||||||||||||||||||||||| ||   || ||||||| || ||||  |
seq2  AGTGGATGCTCACAGTCATCTATTAGGCAGAGCACAGGGTCCCCAATGAA  50

seq1  AAAGCTACAGAAAGCACCCAAGGAGTTGAAGGGGTCTGCA-ACTCTATAG  99
        ||||| |||||| |||||||||| ||||||||| ||||  | |  |||
seq2  TGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTTTGCAGCCCCCCTAG  100

seq1  GCAGAACAACAATATGAACTAATCAGTAACCCCAGAGCTC----------  139
      |  ||| |||||||||||||||||| ||||||||||||||          
seq2  GAGGAATAACAATATGAACTAATCACTAACCCCAGAGCTCCCTGGAACTA  150

seq1  ------------------------GTTT-----CTCTAACTGCATATGTA  160
                              | ||     |||||||||||||||||
seq2  AACCACCAATCAAAGAAAACACATGATTCCTGACTCTAACTGCATATGTA  200

seq1  GCAGAAGATGGCCTAGTTGGCCATCACTGGGAAGAGAGGCCCCTTGGTCT  210
      ||||| ||||||||||| ||  |||| ||||| |||| | ||||||||| 
seq2  GCAGAGGATGGCCTAGTCGGTTATCAATGGGAGGAGA-GACCCTTGGTCC  249

seq1  CGCAAACTTTAT--ATGCCCCAATGCAGGGGAATGCCAGGGCCAAGAAGC  258
       |  ||  || |  |  |||||    |||||| |||| |||||| |||||
seq2  TGTGAAGGTTCTTGACCCCCCAGCATAGGGGATTGCCTGGGCCAGGAAGC  299

seq1  GGGAGTTGGTGGGTAGGGGAGCAGGGTAGAGG--GAGGGTATAGAGAACT  306
       |||||  |||||| ||||| ||| | |||||  ||| | |||| | | |
seq2  AGGAGTGAGTGGGTTGGGGAACAGAG-AGAGGGAGAGAGGATAGGGGATT  348

seq1  TTC-------------------GGGATAGTATTTGAAATGTATATAAAGA  337
      |||                   | ||||  |||||||||||| |||||||
seq2  TTCAGAGGGGAAACTAGGGAAGGTGATAACATTTGAAATGTAAATAAAGA  398

seq1  AAATATCTAATAAAAAATAAGTAAATAAAT  367
      || |||||||||||||||||  ||||||||
seq2  AACTATCTAATAAAAAATAA--AAATAAAT  426

seq1: chr17_93967872_93968831
seq2: B6Ng01-304N08.g_67_1026

seq1  GAATTCTTGTGCTTGGTAATGTTGGAAGACTTTGGATGTTAGTTACAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTGCTTGGTAATGTTGGAAGACTTTGGATGTTAGTTACAAGA  50

seq1  CCCTTTCATTCCTCCAGGCAGCCATCAAAGTTAAGCAGTTAATAAAAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCATTCCTCCAGGCAGCCATCAAAGTTAAGCAGTTAATAAAAGCC  100

seq1  TGGCTGCAGCTAATGTTGGAAAGCATCTGTTCACAGCTGCTGGAGGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCAGCTAATGTTGGAAAGCATCTGTTCACAGCTGCTGGAGGAGTT  150

seq1  GTTCTCAATTAAAATTTGTAATAATTATTTGTACAGTCAACATCTTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAATTAAAATTTGTAATAATTATTTGTACAGTCAACATCTTCTGT  200

seq1  AGCTAAATTAGTCTGGTTTGGGTCAAAACTAATTTGAAACGATAGCACGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAATTAGTCTGGTTTGGGTCAAAACTAATTTGAAACGATAGCACGC  250

seq1  CTTTTCATATCTCGTATTTTACTAAATGGCTTCTCCCTTTGTGGTTTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATATCTCGTATTTTACTAAATGGCTTCTCCCTTTGTGGTTTGTG  300

seq1  ATAAATCAAGACAGAACATATTTAATATAAGGCTCAATTGATATAAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCAAGACAGAACATATTTAATATAAGGCTCAATTGATATAAAAGC  350

seq1  TGATGGAGCCCATTTTCTATATTATCCCTTATTTGAAATGCATATTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAGCCCATTTTCTATATTATCCCTTATTTGAAATGCATATTTGTT  400

seq1  TTAGCAGAGATCTGGAACAAATTTACAAAAGCATGACATTTGCACAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGAGATCTGGAACAAATTTACAAAAGCATGACATTTGCACAAACA  450

seq1  CATGTTTCTCTATTAGAGAAATGACAATCTCGAACAAATGTTATAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTCTCTATTAGAGAAATGACAATCTCGAACAAATGTTATAGAAAA  500

seq1  TTTGACTATGTACATGTGGAAGACTGAATATTGGCCTCATATGCCATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTATGTACATGTGGAAGACTGAATATTGGCCTCATATGCCATCCT  550

seq1  TTTAAACAAAAGCCAACTTAGAATGGACCTGAAATTCTGAAATTATCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAAAAGCCAACTTAGAATGGACCTGAAATTCTGAAATTATCAGG  600

seq1  TAAATAAAAAACACAGAACATTTTAAATATTGAATCAGAGAAAATTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAAAACACAGAACATTTTAAATATTGAATCAGAGAAAATTTTTT  650

seq1  TTTCTTGTGAGAAACACAACAGTCCAGGAAACAAAAGCAAACGCCAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTGAGAAACACAACAGTCCAGGAAACAAAAGCAAACGCCAATAA  700

seq1  GTGGGATTATATTAAACAAAAATGTTTCAGATCCCAAAGAAAATGAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATTATATTAAACAAAAATGTTTCAGATCCCAAAGAAAATGAGAGC  750

seq1  TCTGGGAGGTCTGATTGGTTGATATTGTTGTTCTTCCTATGAGTTGCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGGTCTGATTGGTTGATATTGTTGTTCTTCCTATGAGTTGCAAA  800

seq1  CACCTTCAGCTCTTTCACTCCTTTCTCTAACTCCTCTTTTGGGTACCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCAGCTCTTTCACTCCTTTCTCTAACTCCTCTTTTGGGTACCCTG  850

seq1  CGCTCAGTCCAATGGTTAGCTGCAAGCATCTGCCTCTGTATTTGTTAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCAGTCCAATGGTTAGCTGCAAGCATCTGCCTCTGTATTTGTTAGGC  900

seq1  TCTGGCAGAGCCTCTCAGGGGACAGCAATATCAAGCTCCTGTCAGCAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCAGAGCCTCTCAGGGGACAGCAATATCAAGCTCCTGTCAGCAAGC  950

seq1  AATTGGCACC  960
      ||||||||||
seq2  AATTGGCACC  960