BAC Information

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BAC

Clone NameB6Ng01-305A11
Chromosome17 (Build37)
Map Location 3,931,189 - 3,932,229
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383196, LOC100040029, LOC432993, D030013I16Rik, LOC100040128, 1700024P12Rik, LOC435499, LOC224487, Rbm16, LOC665812, LOC621579, LOC624144, Tiam2, LOC630810, Tfb1m, Cldn20, 1700102H20Rik, Nox3
Downstream gene4930470H14Rik, Ppia-ps17_26.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305A11.bB6Ng01-305A11.g
ACCGA098425GA098426
length1,1491,043
definitionB6Ng01-305A11.b B6Ng01-305A11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaataacgaaaggctaagaagcacttgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaataaaaacaaccctgagat
tctacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggccaggatgtagagaaagaggaacactcctccattgctggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagcagtactggagaatccagcaataccacccctgggc
atatctccagaagatgttccaactggtaataagaacatatgctccactat
gttcatagcagccttatttataatagccagaagctagaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctactaaaaacaatgaatttatgaaattccttggcaa
atggattgatctggaggatatcatcctgagtgaggtaacccaatcacaaa
ggaactcacatgatatgtactcactgttaagtggatattagcccagaaac
tcagaatacccaagatacaatttgcaaaacacatgaaactcaagaagaac
gaagaccaaagtgtggacacttcaccccttcttagaactgggaacaaaat
acccatggaaggagttacagagacaaagtttggagctgagatgaaaggat
ggaccatccagagactgcacccagggatccatcccataatcagtcaccaa
atgcagacgctattgcatatgccagcaaggaccctgatatagctgtgagg
ctaggccagtgcctggcaaacaaaagaagtggatgctcactgtcagctat
tggatggaacacagggccccaatggaggaactagagaaagttcccaagga
gctgacgggtctgcaaccctatagtggacacatatgactaccagtacccc
aaagctcatgtctctagctgcatatgtagcagagatggctagtcgacatc
atggaagaagagcccctttgttatatgccccagtacaggaacaccaggcc
aagactggatgtgtgtggttagggggaccaggccttgcaagggtttaat
gaattctctgtgtcttgagagaaatctgctcttccctatcagtaacaact
acctgaagatttacagaggccaaaagtagaatctgctctaaacaccaaag
tgaacaacagagctctcatctagtgcatctggccacaccagagctatgga
ggaccatcgcaagtgggtcagggtaaacaacctccttggttctcagttcc
ttctctattaaggatggacaataaacccccgtgaagcatggggattgata
agataataattttgcagagcctgtaccaagcctgatgaagagtgagcatt
gggtgagacagctattcccattatttttgtttcaaaggaaatgatcagca
agcagcttcaatcacaaactctacttggagttttttcatttccaaatggc
ccacatgggctttatgcttctgcttgatggtgtttaccaggagagaatga
gtttaataaggctcccttttttgagacaagacagaaagacaatttaggaa
agtataagctctgtggacaatgaagtgtcctgagctaccctttccaccat
taactagctgccggcagagagatgtcaagtccagggacatctctccatct
catcataatttgctcacacaaattatgggatccaatgaggtaatgcatat
tggtatagaatataccagagaatggttctttttttttttttctattcccc
ttcaaaaacatagagtgtctttacttccctgataagatcaagcaacttgc
attttaggaattgagaaaatattccctgaaaaataccttaaagtagatat
aaaaacaaataaaagagcccaaacatttgggtaatagtgagctattagtg
gaatatacattatattataatgggaattatatatatatatatgcaatggg
aataaactattagtagcatatatatatgtatatatatgtatgtatatata
tatatatatatatatacatatatatgtatatatatgcttagagacaggct
gaaaattgatggctgttgagacagaatactgaaaatcagctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_3931189_3932229
seq2: B6Ng01-305A11.g_69_1111 (reverse)

seq1  TTAGCTGATTTTCAGTATTCTGTCTCCACAGCCATTCAATTTTCAGCCTG  50
      |||||||||||||||||||||||||| ||||||| |||||||||||||||
seq2  TTAGCTGATTTTCAGTATTCTGTCTCAACAGCCA-TCAATTTTCAGCCTG  49

seq1  TTCTCT-AGCATATATATACATATATATGTATATATATATATATATATAT  99
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  -TCTCTAAGCATATATATACATATATATGTATATATATATATATATATAT  98

seq1  ATACATACATATATATACATATATATATGCTACTAATAGTTTATT-CCAT  148
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATACATACATATATATACATATATATATGCTACTAATAGTTTATTCCCAT  148

seq1  TGCATATATATATATATAATT-CCATTATAATATAATGTATATTCCACTA  197
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGCATATATATATATATAATTCCCATTATAATATAATGTATATTCCACTA  198

seq1  ATAGCTCACTATTACCCAAATGTTT-GGCTCTTTTATTTGTTTTTATATC  246
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATAGCTCACTATTACCCAAATGTTTGGGCTCTTTTATTTGTTTTTATATC  248

seq1  TACTTTAAGGTATTTTTCAGGGAATATTTTCTCAATTCCTAAAATGCAAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTAAGGTATTTTTCAGGGAATATTTTCTCAATTCCTAAAATGCAAG  298

seq1  TTGCTTGATCTTATCAGGGAAGTAAAGACACTCTATGTTTTTGAAGGGGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGATCTTATCAGGGAAGTAAAGACACTCTATGTTTTTGAAGGGGA  348

seq1  ATAGAAAAAAAAAAAAAGAACCATTCTCTGGTATATTCTATACCAATATG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAAAAAAAAAAGAACCATTCTCTGGTATATTCTATACCAATATG  398

seq1  CATTACCTCATTGGATCCCATAATTTGTGTGAGCAAATTATGATGAGATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCTCATTGGATCCCATAATTTGTGTGAGCAAATTATGATGAGATG  448

seq1  GAGAGATGTCCCTGGACTTGACATCTCTCTGCCGGCAGCTAGTTAATGGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGTCCCTGGACTTGACATCTCTCTGCCGGCAGCTAGTTAATGGT  498

seq1  GGAAAGGGTAGCTCAGGACACTTCATTGTCCACAGAGCTTATACTTTCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGTAGCTCAGGACACTTCATTGTCCACAGAGCTTATACTTTCCT  548

seq1  AAATTGTCTTTCTGTCTTGTCTCAAAAAAGGGAGCCTTATTAAACTCATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTCTTTCTGTCTTGTCTCAAAAAAGGGAGCCTTATTAAACTCATT  598

seq1  CTCTCCTGGTAAACACCATCAAGCAGAAGCATAAAGCCCATGTGGGCCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGGTAAACACCATCAAGCAGAAGCATAAAGCCCATGTGGGCCAT  648

seq1  TTGGAAATGAAAAAACTCCAAGTAGAGTTTGTGATTGAAGCTGCTTGCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATGAAAAAACTCCAAGTAGAGTTTGTGATTGAAGCTGCTTGCTG  698

seq1  ATCATTTCCTTTGAAACAAAAATAATGGGAATAGCTGTCTCACCCAATGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCCTTTGAAACAAAAATAATGGGAATAGCTGTCTCACCCAATGC  748

seq1  TCACTCTTCATCAGGCTTGGTACAGGCTCTGCAAAATTATTATCTTATCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTTCATCAGGCTTGGTACAGGCTCTGCAAAATTATTATCTTATCA  798

seq1  ATCCCCATGCTTCACGGGGGTTTATTGTCCATCCTTAATAGAGAAGGAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCATGCTTCACGGGGGTTTATTGTCCATCCTTAATAGAGAAGGAAC  848

seq1  TGAGAACCAAGGAGGTTGTTTACCCTGACCCACTTGCGATGGTCCTCCAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACCAAGGAGGTTGTTTACCCTGACCCACTTGCGATGGTCCTCCAT  898

seq1  AGCTCTGGTGTGGCCAGATGCACTAGATGAGAGCTCTGTTGTTCACTTTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGTGTGGCCAGATGCACTAGATGAGAGCTCTGTTGTTCACTTTG  948

seq1  GTGTTTAGAGCAGATTCTACTTTTGGCCTCTGTAAATCTTCAGGTAGTTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAGAGCAGATTCTACTTTTGGCCTCTGTAAATCTTCAGGTAGTTG  998

seq1  TTACTGATAGGGAAGAGCAGATTTCTCTCAAGACACAGAGAATTC  1041
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGATAGGGAAGAGCAGATTTCTCTCAAGACACAGAGAATTC  1043