BAC Information

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BAC

Clone NameB6Ng01-305I01
Chromosome17 (Build37)4 (Build37)
Map Location 24,527,621 - 24,528,232151,758,089 - 151,758,412
singlet/doubletsingletsinglet
Overlap geneAbca3
Upstream geneEG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17
Downstream geneRnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305I01.bB6Ng01-305I01.g
ACCGA098777GA098778
length1,056976
definitionB6Ng01-305I01.b B6Ng01-305I01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(24,527,621 - 24,528,232)(151,758,089 - 151,758,412)
sequence
tgccacacagtgccaagcctcagctgctcttcatgactcctccatgcctt
cataccagtaccacctggggggtctcctcacatgaccaagtgtggctccc
agaatgaggtacctgacgagggcacctctggaatacagctgctgtgtgct
gactctgaggaaacacttcccagaagatttcaccttaatgatgctggtct
taatcccagttaatttctcaactccagctgaatagcattgattatcccag
caaagcaaaggtttcatattagctactctggtatcttgttaagcacagct
gattcaccatctacagtaactaggaccacaaactaactgaaaaatctgca
gtaacctcaataaggtgacttagactttccctagaactttacaacccagg
cctccatcctctgcatttctattaacacctttctagctgccacagaacag
ctcaccaaaatttgaacatataatggatgttctaacccaaagttgcaaag
tccacgattctctcaaaagcacactgtcaggtctctctcggcaatcaata
ccccacaatccttaaaccaatgtctgccttactatcgctttgatgaaaca
ccatgaccaagagcgagttagagagaaaagggtttgttttgcttacacta
ccatgactgttcctccctggaggaagtcagggcaggaacctggaggcagg
agctgatgcaaaggcggaggggtgctggttagtgttccgctcagcctact
tccttatagagcccaagaccaccatctgagatgaccccacccacaatgac
tgggccttctcacatcaatcaatcattaagaaaatgccttacaggcttgc
ctgcagcctgatcttatgaaggaattttcttaattgaggtcccctcctct
tagaagttgacataaaactagccagcacatcaatatgattatgtagtttg
agagtttctaatggtttttgtaacagagtcaaacccagagctcatgcacc
tccacccccaggcacacctcacccatgtatgatttacgtttccctcctgt
gtatga
gaattctaggggtcaaactcaatatgccaagtgtgtgtggcaagtgcatt
tacctgcctagccatcttgctgagcagaaggatctctgtgagctccaggc
tagcattcagctacaaagtgaaaccttgcctcaaaataacattgggggtt
aaggagatctcagcactagagcacttatctaccatgcacagaactctgag
ttccatcccggcaaaatactgggcatgctagtacatacctgtaataccag
aactcagaaaacggatgaggaaggacgatgagaagggctgaccaggtggc
ttgtatttaaaggcaggtagttgctgctcaggttcagttcccagcaccca
catggtggttcataactgtaactccagttccagggaagtcaatgccttct
gccctctgagggcatcctctaggtacagagatggcacattcacgcataca
tgcagcaaaacatgcattcactaaagaaatgtaaaaaaacaaaacaaaaa
caaaacaaaacaaaaccctaaaagttcaaggtcatcattgaccacatagg
gagttcaaggccaaatttagatacataagagcttcagagagagacagaga
gagagagagacagacagacagacagacagagacagacaaacaaacagaga
aggtgggcctggtgagcaacctcactgttcttctgaagccaggccaaatc
ctagggtgttgaggacagccagaacaatttgtcaaaatcccacctcacta
tttaaagaacaggtgctcctctctaattcttcccattctcagttttccta
attatttccttaagaaatctatgttctgggctggagagatggctcagtgg
gtaagagcactgactgctcttccaaaggtcatgagttcaaatcccagcaa
ccacatggtagctcacaaccatccataagggaaatctgactccctcttct
gggagtgtctgaagacagctacagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_24527621_24528232
seq2: B6Ng01-305I01.b_516_1112

seq1  ATTTGAACATATAATGGATGTTCTAACCCAAAGTTGCAAAGTCCACGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACATATAATGGATGTTCTAACCCAAAGTTGCAAAGTCCACGATT  50

seq1  CTCTCAAAAGCACACTGTCAGGTCTCTCTCGGCAATCAATACCCCACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAAAGCACACTGTCAGGTCTCTCTCGGCAATCAATACCCCACAAT  100

seq1  CCTTAAACCAATGTCTGCCTTACTATCGCTTTGATGAAACACCATGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAACCAATGTCTGCCTTACTATCGCTTTGATGAAACACCATGACCA  150

seq1  AGAGCGAGTTAGAGAGAAAAGGGTTTGTTTTGCTTACACTACCATGACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCGAGTTAGAGAGAAAAGGGTTTGTTTTGCTTACACTACCATGACTG  200

seq1  TTCCTCCCTGGAGGAAGTCAGGGCAGGAACCTGGAGGCAGGAGCTGATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCCTGGAGGAAGTCAGGGCAGGAACCTGGAGGCAGGAGCTGATGC  250

seq1  AAAGGCGGAGGGGTGCTGGTTAGTGTTCCGCTCAGCCTACTTCCTTATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCGGAGGGGTGCTGGTTAGTGTTCCGCTCAGCCTACTTCCTTATAG  300

seq1  AGCCCAAGACCACCATCTGAGATGACCCCACCCACAATGACTGGGCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAGACCACCATCTGAGATGACCCCACCCACAATGACTGGGCCTTC  350

seq1  TCACATCAATCAATCATTAAGAAAATGCCTTACAGGCTTGCCTGCAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCAATCAATCATTAAGAAAATGCCTTACAGGCTTGCCTGCAGCCT  400

seq1  GATCTTATGAAGGAATTTTCTTAATTGAGGTCCCCTCCTCTTAGAAGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTATGAAGGAATTTTCTTAATTGAGGTCCCCTCCTCTTAGAAGTTG  450

seq1  ACATAAAACTAGCCAGCACATCAAATATGATTATGTAAGGTTTTGAAGAG  500
      |||||||||||||||||||||| ||||||||||||||  ||||    |||
seq2  ACATAAAACTAGCCAGCACATC-AATATGATTATGTA--GTTT----GAG  493

seq1  -GTTTCTAATGGTTTTTTGTAACAGAGGTTCAAACCCAGAGCCTCATGCA  549
       ||||||||||| ||||||||||||||  |||||||||||| ||||||||
seq2  AGTTTCTAATGG-TTTTTGTAACAGAG--TCAAACCCAGAG-CTCATGCA  539

seq1  -CTCCACCCCCAAGCAACACCCTCCAACCCATGTAATGATTTTACGTTTC  598
       ||||||||||| || ||| ||||  |||||||| |||| ||||||||||
seq2  CCTCCACCCCCAGGC-ACA-CCTC--ACCCATGT-ATGA-TTTACGTTTC  583

seq1  CCTCCTGTGTATGA  612
      ||||||||||||||
seq2  CCTCCTGTGTATGA  597

seq1: chr4_151758089_151758412
seq2: B6Ng01-305I01.g_481_986 (reverse)

seq1  GATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTTC  50
      ||||||||||||| |||||||||||||||||||||||||||  |||||| 
seq2  GATGGTTGTGAGCTACCATGTGGTTGCTGGGATTTGAACTCATGACCTTT  50

seq1  GGAAGAGCAGTCAGGTGCTCTTACCCACGGAGCCGTCTCACCAGCCCA-A  99
      ||||||||||||| |||||||||||||| ||||| |||| |||||||| |
seq2  GGAAGAGCAGTCA-GTGCTCTTACCCACTGAGCCATCTCTCCAGCCCAGA  99

seq1  GCCCCTCATTCTT-------------------------GTGGCCAGCTT-  123
       |      |||||                          |||  ||  | 
seq2  ACATAGATTTCTTAAGGAAATAATTAGGAAAACTGAGAATGGGAAGAATT  149

seq1  ---------CACC----CTT--AACAGT--------------ACCCACAG  144
               ||||    |||  || |||              ||  |  |
seq2  AGAGAGGAGCACCTGTTCTTTAAATAGTGAGGTGGGATTTTGACAAATTG  199

seq1  GCATGGCTATGCCC-----------------GCTGGC------AGGACAT  171
         ||||| | | |                  |||||      || ||| 
seq2  TTCTGGCTGTCCTCAACACCCTAGGATTTGGCCTGGCTTCAGAAGAACAG  249

seq1  TCAGAATG---ACCCGAGATACATGATC----------------------  196
      | ||  ||   ||| |    || |  ||                      
seq2  TGAGGTTGCTCACCAGGCCCACCTTCTCTGTTTGTTTGTCTGTCTCTGTC  299

seq1  -----------------------CTAAATGAACCTTTC--AAG-TCTGA-  219
                             ||   ||   || ||  ||| ||| | 
seq2  TGTCTGTCTGTCTGTCTCTCTCTCTCTCTGTCTCTCTCTGAAGCTCTTAT  349

seq1  -GATCCACA--AGGGC---AA----CTACTTGG----AGATGA---AGAA  252
        ||| | |   || |   ||    |||  |||     |||||    |||
seq2  GTATCTAAATTTGGCCTTGAACTCCCTATGTGGTCAATGATGACCTTGAA  399

seq1  C----AAGTTTTTGGCCCG-TAGGTTCAAGGT------------AGGCCT  285
      |    | | |||||    | |  |||   | |            |   ||
seq2  CTTTTAGGGTTTTGTTTTGTTTTGTTTTTGTTTTGTTTTTTTACATTTCT  449

seq1  TTAG-----GGATG-TTAGCTCC------------CTGACCCATCTCTGT  317
      ||||     | ||| || ||| |             ||  ||||||||||
seq2  TTAGTGAATGCATGTTTTGCTGCATGTATGCGTGAATGTGCCATCTCTGT  499

seq1  ACCTAGA  324
      |||||||
seq2  ACCTAGA  506