BAC Information

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BAC

Clone NameB6Ng01-305O14
Chromosome17 (Build37)17 (Build37)
Map Location 62,351,321 - 62,351,89962,026,231 - 62,027,284
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC433129, EG620725, LOC100043560
Downstream geneEfna5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305O14.bB6Ng01-305O14.g
ACCGA099082GA099083
length1,1471,077
definitionB6Ng01-305O14.b B6Ng01-305O14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,351,321 - 62,351,899)(62,026,231 - 62,027,284)
sequence
gaattcatgaatatctttaccagtatttcaataatgcagcaacttctatt
tctattcaaaaataagatattaaaattgacttttacaaaattaaaaaaaa
aatagtctcccaactaaaaaacacctaggaccagatgggattagggaaga
attctatcagaccttcaaagaagacataataccaatactcttcaaactac
tccacaaaacagaaacagaagggtcactacccaattcattctatgaagcc
acagttatgcttatacctaaaccgcacaaagacccaatgaagaaagaaag
cttcagaccaattttgcttatgaatatagatgaaaaatactgaataaaat
tcttgcaaactgaatccaagaacatatcaaaacaatcatccatcatgatc
aagtaggcttcatcccagagatacagagatggctcaatatatggaaaacc
atcaatgtaatccactatataaacaaactcaaaggaaaaaaaaatagaat
tttagaaaacacacttaaataacaaagagatgagaaaaaatgtagaaagg
aatgcaggataaaaagtgttagcagggcgtggtggcacatgcctttaatc
ccagcactcgggaggcagaggcaggcggatttctgagttcaaggccagcc
tggtctacaaagtgagttccaggacagccagggctacacagagaaaccct
gtctctaaaaaccaaaaaaaaaaaaaaaaaaaattgttgatattttaggc
aatatcattacgtatcaggacaatagtgggtgaatattagcttgcatcct
gttggttcctgcaggatttttctggggtcaaagactgacaaaagaaacaa
attattgtgtgatgttgtttatatatatatatatatgtacacatatatat
attcatttattctctctagtaatgatgaattaagcttgtgttcatttaat
tatttagtttctaaagtatgagccttccataagcagaggtaaatagacaa
tcataaaaacataacagaagcacacctaggataaaactatcatccaaata
attatattttatattggagtgaacatattccatttctataaaaataatca
tttagttacattaaaaacctattccagtttgccatattgataagaat

gaattcaggagaagccatcagctcctggaaactatatttgacctactatg
cattgttgcccagaaatttgtctattctgtgtttttttttctcctaaatt
ttaatgttcacagtactttttcactctgtgtgtgtgtgtgtgtgttttgc
catttgcagtatttttgcaatttattaatttattttttcttttcatttta
actaaatatttgccatttttacttatcccttaaaattaatttatttctat
gatcgttaacgttacttaaatttaaaacttttagttaaaaatcccctgag
agattgtaccagagcctgaccaatacaaatgcagatacacacaaaaacca
ttggtctattcacagggaccccgatggaggagttagggaaagggctgaag
gagctgaaggggtttgcaaccccacaggaggaacaattatcaaccaacca
gatgccctccccccgagctcccagagactaaaccaccaaccaaagagtat
acatggagggacccatggctccagctgcatatgtagcagagggtgtcctt
atctggcatcagttggaggggagacccttgtcctgtggaggtttgatatg
atgcctcaggttagggaaatgctagagtgctgaggcaggagtgggtgagt
gggtggggagcaccctcatagaagcaaagagaggcagatgagcggataga
tttaaaactggaaagagggatggcatttgaagtgtaaaattataaaataa
cttatataataaagtaaaaataaaagaaaagaaaaaagaaaaataattag
ttaaaattatttttctcattttatttgttgtcttgggagttgtagatgta
aaattttggcattgtgtgggttgtgtatacactttgtgttggtgcaccag
catgtggaaggctcaaggtttatgtcagggaagcatcttaaaccatcttt
caacattaataataaaggtaccttttctctttaaatccagacttagtcca
atatgcctgaacaaggtctacctatgggtagctctggatgctctttgaat
cacctgtttctcaatttttcatggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_62351321_62351899
seq2: B6Ng01-305O14.b_615_1192 (reverse)

seq1  ATTCTTATCAAATTATGCCAAACTGGAATAGTTTTTTAAATGTAACTAAA  50
      |||||||||||  |||| ||||||||||||| ||||| ||||||||||||
seq2  ATTCTTATCAA--TATGGCAAACTGGAATAGGTTTTT-AATGTAACTAAA  47

seq1  TTGATAATTTTTATAG-AATTGAATATGTTCACT-CAATATAAAATAT-A  97
       |||| |||||||||| ||| ||||||||||||| ||||||||||||| |
seq2  -TGATTATTTTTATAGAAATGGAATATGTTCACTCCAATATAAAATATAA  96

seq1  TTATTT-GATGATAGTTTTATCCTAGGTGTGCTTCTGTTATG-TTTTATG  145
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  TTATTTGGATGATAGTTTTATCCTAGGTGTGCTTCTGTTATGTTTTTATG  146

seq1  ATTGTCTATTTACCTCTGCTTATGGAAAGGCTCATACTTTAGAAACTAAA  195
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTGTCTATTTACCTCTGCTTATGG-AAGGCTCATACTTTAGAAACTAAA  195

seq1  TAATTAAATGAACAC-AGCTTAATTCATCATTACTAGAGAGAATAAATGA  244
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAATTAAATGAACACAAGCTTAATTCATCATTACTAGAGAGAATAAATGA  245

seq1  ATATATATATGTGTACATATATATATATATATAAACAACATCACACAATA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATGTGTACATATATATATATATATAAACAACATCACACAATA  295

seq1  ATTTGTTTCTTTTGTCAGTCTTTGACCCCAGAAAAATCCTGCAGGAACCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTCTTTTGTCAGTCTTTGACCCCAGAAAAATCCTGCAGGAACCA  345

seq1  ACAGGATGCAAGCTAATATTCACCCACTATTGTCCTGATACGTAATGATA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATGCAAGCTAATATTCACCCACTATTGTCCTGATACGTAATGATA  395

seq1  TTGCCTAAAATATCAACAATTTTTTTTTTTTTTTTTTTTTTGGTTTTTAG  444
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  TTGCCTAAAATATCAACAA--TTTTTTTTTTTTTTTTTTTTGGTTTTTAG  443

seq1  AGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAG  493

seq1  ACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTG  543

seq1  CTGGGATTAAAGGCATGTGCCACCACGCCCTGCTA  579
      |||||||||||||||||||||||||||||||||||
seq2  CTGGGATTAAAGGCATGTGCCACCACGCCCTGCTA  578


seq1: chr17_62026231_62027284
seq2: B6Ng01-305O14.g_68_1144

seq1  GAATTCAGGAGAAGCCATCAGCTCCTGGAAACTATATTTGACCTACTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGAAGCCATCAGCTCCTGGAAACTATATTTGACCTACTATG  50

seq1  CATTGTTGCCCAGAAATTTGTCTATTCTGTGTTTTTTTTTCTCCTAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTGCCCAGAAATTTGTCTATTCTGTGTTTTTTTTTCTCCTAAATT  100

seq1  TTAATGTTCACAGTACTTTTTCACTCTGTGTGTGTGTGTGTGTGTTTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTCACAGTACTTTTTCACTCTGTGTGTGTGTGTGTGTGTTTTGC  150

seq1  CATTTGCAGTATTTTTGCAATTTATTAATTTATTTTTTCTTTTCATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCAGTATTTTTGCAATTTATTAATTTATTTTTTCTTTTCATTTTA  200

seq1  ACTAAATATTTGCCATTTTTACTTATCCCTTAAAATTAATTTATTTCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATATTTGCCATTTTTACTTATCCCTTAAAATTAATTTATTTCTAT  250

seq1  GATCGTTAACGTTACTTAAATTTAAAACTTTTAGTTAAAAATCCCCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGTTAACGTTACTTAAATTTAAAACTTTTAGTTAAAAATCCCCTGAG  300

seq1  AGATTGTACCAGAGCCTGACCAATACAAATGCAGATACACACAAAAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTACCAGAGCCTGACCAATACAAATGCAGATACACACAAAAACCA  350

seq1  TTGGTCTATTCACAGGGACCCCGATGGAGGAGTTAGGGAAAGGGCTGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTATTCACAGGGACCCCGATGGAGGAGTTAGGGAAAGGGCTGAAG  400

seq1  GAGCTGAAGGGGTTTGCAACCCCACAGGAGGAACAATTATCAACCAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAAGGGGTTTGCAACCCCACAGGAGGAACAATTATCAACCAACCA  450

seq1  GATGCCCTCCCCCCGAGCTCCCAGAGACTAAACCACCAACCAAAGAGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCTCCCCCCGAGCTCCCAGAGACTAAACCACCAACCAAAGAGTAT  500

seq1  ACATGGAGGGACCCATGGCTCCAGCTGCATATGTAGCAGAGGGTGTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAGGGACCCATGGCTCCAGCTGCATATGTAGCAGAGGGTGTCCTT  550

seq1  ATCTGGCATCAGTTGGAGGGGAGACCCTTGTCCTGTGGAGGTTTGATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCATCAGTTGGAGGGGAGACCCTTGTCCTGTGGAGGTTTGATATG  600

seq1  ATGCCTCAGGTTAGGGAAATGCTAGAGTGCTGAGGCAGGAGTGGGTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCAGGTTAGGGAAATGCTAGAGTGCTGAGGCAGGAGTGGGTGAGT  650

seq1  GGGTGGGGAGCACCCTCATAGAAGCAAAGAGAGGCAGATGAGCGGATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGAGCACCCTCATAGAAGCAAAGAGAGGCAGATGAGCGGATAGA  700

seq1  TTTAAAACTGGAAAGAGGGATGGCATTTGAAGTGTAAAATTATAAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACTGGAAAGAGGGATGGCATTTGAAGTGTAAAATTATAAAATAA  750

seq1  CTTATATAATAAAGT-AAAATAAAAGAAAAGAAAAAAGAAAAATAATTAG  799
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTATATAATAAAGTAAAAATAAAAGAAAAGAAAAAAGAAAAATAATTAG  800

seq1  TTAAAATTATTTTTCTCATTT--ATTGTTGTCTT-GGAGTTGTAGATGTA  846
      |||||||||||||||||||||   |||||||||| |||||||||||||||
seq2  TTAAAATTATTTTTCTCATTTTATTTGTTGTCTTGGGAGTTGTAGATGTA  850

seq1  AAATTTT-GCA-TGTGTGGG-TGTGTATACAC-TTGTGT--GTGCA-CAG  889
      ||||||| ||| |||||||| ||||||||||| ||||||  ||||| |||
seq2  AAATTTTGGCATTGTGTGGGTTGTGTATACACTTTGTGTTGGTGCACCAG  900

seq1  CATGTGG-AGGCCCAAGGTTTATGTCAGGG-AGCATCTTAAA-CATC-TT  935
      ||||||| |||| ||||||||||||||||| ||||||||||| |||| ||
seq2  CATGTGGAAGGCTCAAGGTTTATGTCAGGGAAGCATCTTAAACCATCTTT  950

seq1  CCACATTAATTAATTAAGGTACCTTTTCTCTTTAAATCCAGGACTAG-CC  984
      | ||||||| |||| ||||||||||||||||||||||||||   ||| ||
seq2  CAACATTAA-TAATAAAGGTACCTTTTCTCTTTAAATCCAGACTTAGTCC  999

seq1  AATATGCCTG-ACAAGG-CTA-CTAT-GGTAGC-CAGGATGCTTTTGGAA  1029
      |||||||||| |||||| ||| |||| |||||| | ||||||| || |||
seq2  AATATGCCTGAACAAGGTCTACCTATGGGTAGCTCTGGATGCTCTTTGAA  1049

seq1  TCACCTGT---TCCAGTTTTCATGGCTG  1054
      ||||||||   || | ||||||||||||
seq2  TCACCTGTTTCTCAATTTTTCATGGCTG  1077


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