BAC Information

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BAC

Clone NameB6Ng01-309C01
Chromosome17 (Build37)
Map Location 36,601,539 - 36,738,034
singlet/doubletdoublet
Overlap geneH2-M11, LOC667896
Upstream geneH2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4
Downstream geneH2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309C01.bB6Ng01-309C01.g
ACCGA101446GA101447
length1,130794
definitionB6Ng01-309C01.b B6Ng01-309C01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,601,539 - 36,602,660)(36,737,242 - 36,738,034)
sequence
gaattcttctaatatagcagggcatgatggtgcacgcctgtaattcttgt
cattgggaagcagaggagttcaaggccttcatgagctagaagaaatccat
ggtaaaggggaagacagagtcactctgatggactgtccagagaatgaagt
ggggaaagttagtcaacagctttcagaggaggtgagtgatgttcggaaat
ctctagcttatttgcaaagaaatacaggaaatgatatagagcagatgagc
aaagaggcctccttttctgaacttaagcctaaccctcatggtaagatcct
gcagatgaacttggtgggtaggcagcagtcactgaccttttttttcttct
tccctgttctgagaacaggagagtgacaccttcctcatgtgcagtattaa
gtacaggtctcagtctctgtagaaggatgaatcaaagctggatggggccg
ggacactcaggacacatgaaaaatatgccaggaataagtgagtgtggctt
ggataaaaactaccagacacagtgagtgatggtaagaataatgtacctta
taagtattaaaggaaatcatataaagtagtaaaagggaaaagtccagatt
tcataaaggggggactgtgggtctagcaagcaccctcactgaagagaagt
gaccagagctgtggcaaagacagaaggcccctgaaaaattccagtgtgca
ctcagaaccagatattttaagtcaggagagatggagcaagggagacaaaa
gttttaagcaaccacaccaggagaaatagtggaaaaccctctcccttctg
tacccaaacaaagacctctactgagctggtggtttgttagctccagaccc
tccagtaaccgcactctcaggagagtcagagcattggaatatatgctgac
acctggtaggatcgcatacacaggaaggaagaagctttaaatcagaccat
gtagaattcagagtggtagaaatctgtcaggctcagagtctgcacagacc
attgaccaccggtttccaagcgtgtgcctccctagatgccagaagatcct
tacagagggtcaagtcatgtttcaaaatgggactgcccgaagaacatgtc
tagagtttgagccagcacctggaagtcttg
gaattcagaagagagcatctaatcccatagagctgcaataacaggtattt
gtgagtgggtcctacatgaagctttgaaatgacctcagccccactccatg
agcagtaagtacattaaaaaactaagccattcccccaatcccagggtcat
gaactctgactgcctttcttttctggatctcagggtctgcaacaatttga
ttcatgggtcaattctcaaccacttaccaaggagtaaatctgagaagtag
acctcctaattacagagtctgaataaggaaagggaggcttgttggagatt
tgagagaaatctctatcatgtgtgtattatgaaatcttgtccaccacatt
cttggagacctttcttgccagaaagtccagacatccttaaaaactgggac
ataacaccaagctctggcaaaggactgaaatctgagttacatctaacctc
acagcctgtgattcagcagggagggaaaaactgaggtagaggaagtattt
cttattctgcatgaacactgatttccatttttgagcctgccatgcaacag
ctatagagccatggaagctatcctagggcacagactcaaactttgacacc
tagaaaagatgagatctaataatagatgccagtgtaaacacaaatgtgtc
agaaggaggctgcatcttcataggacccatgaaaaggttaagggcaagga
cacttgggttcttatctcagagatattaaatgatgaccataatatagaat
gttgtactgtaggtctcagtcttgaaaggtctatgggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_36601539_36602660
seq2: B6Ng01-309C01.b_46_1175

seq1  GAATTCTTCTAATATAGCAGGGCATGATGGTGCACGCCTGTAATTCTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTAATATAGCAGGGCATGATGGTGCACGCCTGTAATTCTTGT  50

seq1  CATTGGGAAGCAGAGGAGTTCAAGGCCTTCATGAGCTAGAAGAAATCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGAAGCAGAGGAGTTCAAGGCCTTCATGAGCTAGAAGAAATCCAT  100

seq1  GGTAAAGGGGAAGACAGAGTCACTCTGATGGACTGTCCAGAGAATGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGGGGAAGACAGAGTCACTCTGATGGACTGTCCAGAGAATGAAGT  150

seq1  GGGGAAAGTTAGTCAACAGCTTTCAGAGGAGGTGAGTGATGTTCGGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAGTTAGTCAACAGCTTTCAGAGGAGGTGAGTGATGTTCGGAAAT  200

seq1  CTCTAGCTTATTTGCAAAGAAATACAGGAAATGATATAGAGCAGATGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCTTATTTGCAAAGAAATACAGGAAATGATATAGAGCAGATGAGC  250

seq1  AAAGAGGCCTCCTTTTCTGAACTTAAGCCTAACCCTCATGGTAAGATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGCCTCCTTTTCTGAACTTAAGCCTAACCCTCATGGTAAGATCCT  300

seq1  GCAGATGAACTTGGTGGGTAGGCAGCAGTCACTGACCTTTTTTTTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGAACTTGGTGGGTAGGCAGCAGTCACTGACCTTTTTTTTCTTCT  350

seq1  TCCCTGTTCTGAGAACAGGAGAGTGACACCTTCCTCATGTGCAGTATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTTCTGAGAACAGGAGAGTGACACCTTCCTCATGTGCAGTATTAA  400

seq1  GTACAGGTCTCAGTCTCTGTAGAAGGATGAATCAAAGCTGGATGGGGCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGTCTCAGTCTCTGTAGAAGGATGAATCAAAGCTGGATGGGGCCG  450

seq1  GGACACTCAGGACACATGAAAAATATGCCAGGAATAAGTGAGTGTGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTCAGGACACATGAAAAATATGCCAGGAATAAGTGAGTGTGGCTT  500

seq1  GGATAAAAACTACCAGACACAGTGAGTGATGGTAAGAATAATGTACCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAAACTACCAGACACAGTGAGTGATGGTAAGAATAATGTACCTTA  550

seq1  TAAGTATTAAAGGAAATCATATAAAGTAGTAAAAGGGAAAAGTCCAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATTAAAGGAAATCATATAAAGTAGTAAAAGGGAAAAGTCCAGATT  600

seq1  TCATAAAGGGGGGACTGTGGGTCTAGCAAGCACCCTCACTGAAGAGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGGGGGGACTGTGGGTCTAGCAAGCACCCTCACTGAAGAGAAGT  650

seq1  GACCAGAGCTGTGGCAAAGACAGAAGGCCCCTGAAAAATTCCAGTGTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAGCTGTGGCAAAGACAGAAGGCCCCTGAAAAATTCCAGTGTGCA  700

seq1  CTCAGAACCAGATATTTTAAGTCAGGAGAGATGGAGCAAGGGAGACAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAACCAGATATTTTAAGTCAGGAGAGATGGAGCAAGGGAGACAAAA  750

seq1  GTTTTAAGCAACCACACCAGGAGAAATAGTGGAAAACCCTCTCCCTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAGCAACCACACCAGGAGAAATAGTGGAAAACCCTCTCCCTTCTG  800

seq1  TACCCAAACAAAGACCTCTACTGAGCTGGTGGTTTGTTAGCTCCAGACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAACAAAGACCTCTACTGAGCTGGTGGTTTGTTAGCTCCAGACCC  850

seq1  TCCAGTAACCGCACTCTCAGGAGAGTCAGAGCATTGGAATATATGCTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTAACCGCACTCTCAGGAGAGTCAGAGCATTGGAATATATGCTGAC  900

seq1  ACCTGGTAGGATCGCATACACAGGAAGGAAGAAGCTTTAAATCAGACCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTAGGATCGCATACACAGGAAGGAAGAAGCTTTAAATCAGACCAT  950

seq1  GTAGAATTCAGAGTGGTAGAAATCTGTCAGGCTCAGAGTCTGCACAGACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATTCAGAGTGGTAGAAATCTGTCAGGCTCAGAGTCTGCACAGACC  1000

seq1  ATTGA-CACCGG-TTCCAAGCGTGTG-CTCCCTAGATGGCAGGAAGATCC  1047
      ||||| |||||| ||||||||||||| ||||||||||| || ||||||||
seq2  ATTGACCACCGGTTTCCAAGCGTGTGCCTCCCTAGATGCCA-GAAGATCC  1049

seq1  TTACAGA-GGTCAGGTCATGTTTCAAAATGGGACTG-CCGAAG-ACATGT  1094
      ||||||| ||||| |||||||||||||||||||||| |||||| ||||||
seq2  TTACAGAGGGTCAAGTCATGTTTCAAAATGGGACTGCCCGAAGAACATGT  1099

seq1  CTAGAGTTTGAG-CAGCAACTG--AGTCTTG  1122
      |||||||||||| ||||| |||  |||||||
seq2  CTAGAGTTTGAGCCAGCACCTGGAAGTCTTG  1130

seq1: chr17_36737242_36738034
seq2: B6Ng01-309C01.g_63_856 (reverse)

seq1  CCCCCCCCCCATAGACC-TTCAAGACTGAGACCTACAGTACAACATTCTA  49
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCATAGACCTTTCAAGACTGAGACCTACAGTACAACATTCTA  50

seq1  TATTATGGTCATCATTTAATATCTCTGAGATAAGAACCCAAGTGTCCTTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGGTCATCATTTAATATCTCTGAGATAAGAACCCAAGTGTCCTTG  100

seq1  CCCTTAACCTTTTCATGGGTCCTATGAAGATGCAGCCTCCTTCTGACACA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAACCTTTTCATGGGTCCTATGAAGATGCAGCCTCCTTCTGACACA  150

seq1  TTTGTGTTTACACTGGCATCTATTATTAGATCTCATCTTTTCTAGGTGTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTTACACTGGCATCTATTATTAGATCTCATCTTTTCTAGGTGTC  200

seq1  AAAGTTTGAGTCTGTGCCCTAGGATAGCTTCCATGGCTCTATAGCTGTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGAGTCTGTGCCCTAGGATAGCTTCCATGGCTCTATAGCTGTTG  250

seq1  CATGGCAGGCTCAAAAATGGAAATCAGTGTTCATGCAGAATAAGAAATAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAGGCTCAAAAATGGAAATCAGTGTTCATGCAGAATAAGAAATAC  300

seq1  TTCCTCTACCTCAGTTTTTCCCTCCCTGCTGAATCACAGGCTGTGAGGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTACCTCAGTTTTTCCCTCCCTGCTGAATCACAGGCTGTGAGGTT  350

seq1  AGATGTAACTCAGATTTCAGTCCTTTGCCAGAGCTTGGTGTTATGTCCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAACTCAGATTTCAGTCCTTTGCCAGAGCTTGGTGTTATGTCCCA  400

seq1  GTTTTTAAGGATGTCTGGACTTTCTGGCAAGAAAGGTCTCCAAGAATGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAAGGATGTCTGGACTTTCTGGCAAGAAAGGTCTCCAAGAATGTG  450

seq1  GTGGACAAGATTTCATAATACACACATGATAGAGATTTCTCTCAAATCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAAGATTTCATAATACACACATGATAGAGATTTCTCTCAAATCTC  500

seq1  CAACAAGCCTCCCTTTCCTTATTCAGACTCTGTAATTAGGAGGTCTACTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGCCTCCCTTTCCTTATTCAGACTCTGTAATTAGGAGGTCTACTT  550

seq1  CTCAGATTTACTCCTTGGTAAGTGGTTGAGAATTGACCCATGAATCAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATTTACTCCTTGGTAAGTGGTTGAGAATTGACCCATGAATCAAAT  600

seq1  TGTTGCAGACCCTGAGATCCAGAAAAGAAAGGCAGTCAGAGTTCATGACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCAGACCCTGAGATCCAGAAAAGAAAGGCAGTCAGAGTTCATGACC  650

seq1  CTGGGATTGGGGGAATGGCTTAGTTTTTTAATGTACTTACTGCTCATGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTGGGGGAATGGCTTAGTTTTTTAATGTACTTACTGCTCATGGA  700

seq1  GTGGGGCTGAGGTCATTTCAAAGCTTCATGTAGGACCCACTCACAAATAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCTGAGGTCATTTCAAAGCTTCATGTAGGACCCACTCACAAATAC  750

seq1  CTGTTATTGCAGCTCTATGGGATTAGATGCTCTCTTCTGAATTC  793
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATTGCAGCTCTATGGGATTAGATGCTCTCTTCTGAATTC  794