BAC Information

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BAC

Clone NameB6Ng01-309F23
Chromosome17 (Build37)
Map Location 23,486,085 - 23,520,646
singlet/doubletdoublet
Overlap geneEG638102
Upstream gene6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002
Downstream geneEG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309F23.bB6Ng01-309F23.g
ACCGA101630GA101631
length985861
definitionB6Ng01-309F23.b B6Ng01-309F23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,519,676 - 23,520,646)(23,486,085 - 23,486,921)
sequence
gaattcccacaattagtatcttctaaactaatacttaagtggcaaatgaa
cctgtgtttaatgagtaaaatagtcttatatagttttccttgtcatctat
tcttcataatattttagaacccgtactgtcagtgggagagtttattgata
attgaggtaagatgattctatgtggatatggaatggatttaaagcagcac
aaatataggcaactctctgttctgtgttgtggtacgtcatatttggcatt
taagatgaagcaaataggacctacttattttctaaattttcttgaaatgt
tgaaatatcaaaaatttccacatccacgatctagaacctccctcctctga
ggctaaaatatgcatatagagagatatgagatgaagaatttttttcccat
aggagagtaaaggagtttccaaactggcttcacatgctactccatcccca
tatcctttgggtgttttcaattctcaaaaatacttctcctacttacttca
tgtttaaatgtgtgtatatacacacaaatacatacatatatccttttact
gacttttgtatatggaatgtaacttgccttttgtggtaaagcctacctga
taatgttattgatatttttgattggttcttagatttcactttgtaagaat
ttcattgtgtttttgtaccaaggttcatcagaaaaattattctgtaaatc
tccttcttggtgagttcattatgtggcttagttatttcagtgaatgtagc
ctttataatctgaactgagaaatagcttttctgttttcttctgtttggga
taatatcacgttgatggttgtatcttggattttttccaaagaatttctgt
cctaaatttaatttaggtctcacttttttggccggaaggagtttgggaga
atttttagtgaatttctttctattcaatcgttgggtaaaactccggagtg
taaatttattattcttaacttctctttacccttag
gaattccattcttagagcaaagaacataagagctgaaaattaagttataa
aactgcatatccatttagaggatagtattgaaatctcctgtgtgttctaa
caagacctcaaattatatttatatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatgtggatactgagagctaa
aaatgtgaagacatcaatgaaatatttcatacatatgaatcttttttttt
tgtgaaagactgttcaatgatatactaaacagggaatgagtggattatta
taagaatatatatatatataaaagaagggcaggaagcgcgggggggcgaa
tacgattaaactctgaaatatttaatcactgagacactgagaccaaaaat
aacaaaggatttcagtaaattttaaaataattaaagactttcaagcacac
acacacacacacacacacacacacacacacacacgcacacacacacacac
acacatatatatatatatacatatatatatatatatatatatatatatat
atatatatgaaaaactaaatgaatctataaaattacctctgtgaataatc
tcacagaaacatgctccaaatttgaggacggaagaaaaaacccataaaga
aagtagaaaaatacaaaactacaacaaagataaaaaataaggaggaaaaa
tgaaaactctttgaataggggatgttttgattaaaagattcaaaatttaa
tacccaatggggaccaagagaaaagaagaaagccactctagggtatcaaa
caatatacccaataatgtttgctgctggtacaaatacaaaaatagtgtgg
gagaaaaagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_23519676_23520646
seq2: B6Ng01-309F23.b_46_1030 (reverse)

seq1  CTAAGGGTAAAGAG-AGTT-AGAATAA-AAATTTACACACCGGAATTCTA  47
      |||||||||||||| |||| ||||||| |||||||||| ||||| || ||
seq2  CTAAGGGTAAAGAGAAGTTAAGAATAATAAATTTACACTCCGGAGTTTTA  50

seq1  ACCAACAGTGAAATAGAA--GAATTCACT-AAAATTCTCCC-AACTCC-T  92
       |||||  |  |||||||   |||||||| ||||||||||| |||||| |
seq2  CCCAACGATTGAATAGAAAGAAATTCACTAAAAATTCTCCCAAACTCCTT  100

seq1  CCGGCCAAAAAAGTGAGACCTAAA-TAAATTTAGGACAG-AATTCTTT-G  139
      |||||||||||||||||||||||| |||||||||||||| |||||||| |
seq2  CCGGCCAAAAAAGTGAGACCTAAATTAAATTTAGGACAGAAATTCTTTGG  150

seq1  AAAAAATCCAAGATACAACCATCAACGTGATATTATCCCAAACAGAAG-A  188
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAAAATCCAAGATACAACCATCAACGTGATATTATCCCAAACAGAAGAA  200

seq1  AACAGAAAAGCTATTTCTCAGTTCAGATTAT-AAGGCTACATTCACTGAA  237
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AACAGAAAAGCTATTTCTCAGTTCAGATTATAAAGGCTACATTCACTGAA  250

seq1  ATAACTAAGCCACATAATGAACTCACCAAGAAGGAGATTTACAGAATAAT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAAGCCACATAATGAACTCACCAAGAAGGAGATTTACAGAATAAT  300

seq1  TTTTCTGATGAACCTTGGTACAAAAACACAATGAAATTCTTACAAAGTG-  336
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTTCTGATGAACCTTGGTACAAAAACACAATGAAATTCTTACAAAGTGA  350

seq1  AATCTAAGAACCAATCAAAAATATCAATAACATTATCAGGTAGGCTTTAC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAGAACCAATCAAAAATATCAATAACATTATCAGGTAGGCTTTAC  400

seq1  CACAAAAGGCAAGTTACATTCCATATACAAAAGTCAGTAAAAGGATATAT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGGCAAGTTACATTCCATATACAAAAGTCAGTAAAAGGATATAT  450

seq1  GTATGTATTTGTGTGTATATACACACATTTAAACATGAAGTAAGTAGGAG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATTTGTGTGTATATACACACATTTAAACATGAAGTAAGTAGGAG  500

seq1  AAGTATTTTTGAGAATTGAAAACACCCAAAGGATATGGGGATGGAGTAGC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTTTGAGAATTGAAAACACCCAAAGGATATGGGGATGGAGTAGC  550

seq1  ATGTGAAGCCAGTTTGGAAACTCCTTTACTCTCCTATGGGAAAAAAATTC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAGCCAGTTTGGAAACTCCTTTACTCTCCTATGGGAAAAAAATTC  600

seq1  TTCATCTCATATCTCTCTATATGCATATTTTAGCCTCAGAGGAGGGAGGT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTCATATCTCTCTATATGCATATTTTAGCCTCAGAGGAGGGAGGT  650

seq1  TCTAGATCGTGGATGTGGAAATTTTTGATATTTCAACATTTCAAGAAAAT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATCGTGGATGTGGAAATTTTTGATATTTCAACATTTCAAGAAAAT  700

seq1  TTAGAAAATAAGTAGGTCCTATTTGCTTCATCTTAAATGCCAAATATGAC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAATAAGTAGGTCCTATTTGCTTCATCTTAAATGCCAAATATGAC  750

seq1  GTACCACAACACAGAACAGAGAGTTGCCTATATTTGTGCTGCTTTAAATC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACAACACAGAACAGAGAGTTGCCTATATTTGTGCTGCTTTAAATC  800

seq1  CATTCCATATCCACATAGAATCATCTTACCTCAATTATCAATAAACTCTC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCATATCCACATAGAATCATCTTACCTCAATTATCAATAAACTCTC  850

seq1  CCACTGACAGTACGGGTTCTAAAATATTATGAAGAATAGATGACAAGGAA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGACAGTACGGGTTCTAAAATATTATGAAGAATAGATGACAAGGAA  900

seq1  AACTATATAAGACTATTTTACTCATTAAACACAGGTTCATTTGCCACTTA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATATAAGACTATTTTACTCATTAAACACAGGTTCATTTGCCACTTA  950

seq1  AGTATTAGTTTAGAAGATACTAATTGTGGGAATTC  971
      |||||||||||||||||||||||||||||||||||
seq2  AGTATTAGTTTAGAAGATACTAATTGTGGGAATTC  985

seq1: chr17_23486085_23486921
seq2: B6Ng01-309F23.g_67_927

seq1  GAATTCCATTCTTAGAGCAAAGAACATAAGAGCTGAAAATTAAGTTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCTTAGAGCAAAGAACATAAGAGCTGAAAATTAAGTTATAA  50

seq1  AACTGCATATCCATTTAGAGGATAGTATTGAAATCTCCTGTGTGTTCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCATATCCATTTAGAGGATAGTATTGAAATCTCCTGTGTGTTCTAA  100

seq1  CAAGACCTCAAATTATATTTATATATATATATATATATATATATATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCTCAAATTATATTTATATATATATATATATATATATATATATAT  150

seq1  ATATATATATATATATATATATTCTAATCTCAATGTGGAATCTAATAATT  200
      ||||||||||||||||||||||    || |  |||||||  || | |  |
seq2  ATATATATATATATATATATAT--ATATATATATGTGGATACTGAGAGCT  198

seq1  AAAAATGTGAAGACATCAATGAAATATTTCAAACATTAGAATCATATATT  250
      ||||||||||||||||||||||||||||||| ||||  ||||| | | ||
seq2  AAAAATGTGAAGACATCAATGAAATATTTCATACATATGAATCTTTTTTT  248

seq1  TATGTGAAAGACTGTTCAATGATATACTAAACAAGGAAGTACAGGATTAT  300
      | ||||||||||||||||||||||||||||||| ||||  |  |||||||
seq2  TTTGTGAAAGACTGTTCAATGATATACTAAACAGGGAATGAGTGGATTAT  298

seq1  TATAAGAATGGTAATAAAAAATCAAAGAAGGGCAGGAATCACCTGTGGGT  350
      |||||||||  ||   | | || ||||||||||||||| | |  | ||| 
seq2  TATAAGAAT-ATATATATATATAAAAGAAGGGCAGGAAGCGCGGGGGGGC  347

seq1  GAATACGATTAAACTCTGAAATATTTAATCACTGAGACACTGAGTCCAAA  400
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAATACGATTAAACTCTGAAATATTTAATCACTGAGACACTGAGACCAAA  397

seq1  AATAACAAAGGATTTCAGTAAATTTTAAAATAATTAAAGACTTTCAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAAAGGATTTCAGTAAATTTTAAAATAATTAAAGACTTTCAAGCA  447

seq1  CACACACACACACACACACACACACACACACACACACGCACACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACGCACACACACACA  497

seq1  CACACACATATATATATATATAC--ATATATATATATATATATATATATA  548
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  CACACACATATATATATATATACATATATATATATATATATATATATATA  547

seq1  TATATATATATGAAAAACAAAATGAATCAAAAAAATTACCTCAGTGAATA  598
      |||||||||||||||||| ||||||||| | ||||||||||| |||||||
seq2  TATATATATATGAAAAACTAAATGAATCTATAAAATTACCTCTGTGAATA  597

seq1  ATCTCACAGAAGCATGCTCCAAA-TTGAGGACGGAAG-AAAAAGCCATAA  646
      ||||||||||| ||||||||||| ||||||||||||| ||||| ||||||
seq2  ATCTCACAGAAACATGCTCCAAATTTGAGGACGGAAGAAAAAACCCATAA  647

seq1  --GAAGTAG-AAAATAC-AAACTACAACAAAGAT-AAAAATAAGGAGGAA  691
         |||||| ||||||| |||||||||||||||| |||||||||||||||
seq2  AGAAAGTAGAAAAATACAAAACTACAACAAAGATAAAAAATAAGGAGGAA  697

seq1  AAATG-AAACTCATTGAATA-AGGATG-TTTGATTAAAAGAT--CAAATT  736
      ||||| |||||| |||||||  ||||| ||||||||||||||   |||||
seq2  AAATGAAAACTCTTTGAATAGGGGATGTTTTGATTAAAAGATTCAAAATT  747

seq1  TAA-AACCAAT-GGGAACAAGAG-AAAGAAG-AAGCCACTCTA-GGTATC  781
      ||| | ||||| |||| |||||| ||||||| ||||||||||| ||||||
seq2  TAATACCCAATGGGGACCAAGAGAAAAGAAGAAAGCCACTCTAGGGTATC  797

seq1  -AACAATATACCC-ATTATG-TTGCTGCT-GTACAAATAC-AAAATAGTG  826
       |||||||||||| || ||| |||||||| |||||||||| |||||||||
seq2  AAACAATATACCCAATAATGTTTGCTGCTGGTACAAATACAAAAATAGTG  847

seq1  TGGG---AAAAGTA  837
      ||||   |||||||
seq2  TGGGAGAAAAAGTA  861