BAC Information

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BAC

Clone NameB6Ng01-309L02
Chromosome2 (Build37)17 (Build37)
Map Location 56,213,983 - 56,215,17037,264,506 - 37,265,127
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309L02.bB6Ng01-309L02.g
ACCGA101870GA101871
length1,183672
definitionB6Ng01-309L02.b B6Ng01-309L02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,213,983 - 56,215,170)(37,264,506 - 37,265,127)
sequence
gaattccaaaatgtagtcccaaagtcaattgtattgaagtggattattac
actcatagaattctattgacctacaacttttttagaaatttgtgtattat
attacggattgaagatacacagtgaattaacattttaaaaaaataagtgt
ctgaaaccttacacttgaaatatctgtactcagtcaggaaccttgcacaa
atataattcttcaaatgactatgaaactgtgtttataataataactaaag
aaaatatacttaaaatataaatttctttagtagtctaaactggtattttt
gtctttatggaaggatcacaactataattaatgcataacaaaagaatttg
cattgtgagtggtttaattattcatttagtgactaatgctggctaccact
aatacacttttttagaaaaaggaaaaccaactatttaatcactctaaatg
tttcataaattaaagggcttttaagggctaccacttacattcaaaacttt
taacatacatttctaattactaaaaattagaaacgacagattataatttt
tttcatggagtagaatccataaatgtttatatggtggttattttcctgat
tgttattatcagtactagttaagtgagtcatgtattagatatatgaaatg
aattataaatttcagtattgtggaaacattacccaaataccttatttttt
cttaaatacccaggatttgtgtaacagccccttcgtctccaaccaatata
atcgcttttcattggaaaatcttgtgatgacttagtatctgtaagctttc
tggttaagtcttacaaatactccttttaggatttattgagaacgaaaaat
ccagaagtctgagaaaaaaaaaaaagatgataaaactgatgctttgttgc
tgttgggctacaaacacaactttggtttgtatgtaatgctaccaaaacca
acagccctaaatttatctaaccttctgaatagtgaatgacaaagtaaaat
taacagctagttataaactagtactatggcaatgacatgtgaattatttc
aaagggcatattcatgtgaccataggagccatcattcataataaacatga
tgagagaaagagcttcagccactctatcttgcaaggaaacattctattct
ccacgtagctattgagtggccgggtaacctgat
gaattccatgaccatgaatgggtgtgagtgggttggggacatgggggagg
tttctatagtatggaatgaagagaagctaaaatttgtcttgctgcaagac
ggagttactatggaaaggattcagtgaactagcatcactatatacaacac
tcctcttgactttggttcttatagtttttccaccagctctttgctattcc
ctttgggtgttgaaggatgggggctgtggttctctttttgtttgtttgtt
tgtttgtttgtttttgttttgttttgttttgttttttcgagacagggttt
ctctgtgtagctctggctatccaggaactcactctgtaagaccaggctgg
cctcgaactcagaaatccgcctgcctctgcctcccaagtgctgggattaa
aggtgtgcaccaccacccggcttgtggttctctcttaagactgagaggat
aatagtgagacttcattccatataatatagtgatcatggacacaattgtt
aatccttaaattgtcacaaaagatagtcaagagtatatgaccacagtaaa
ctcataggaagcccagtatgcataggtgtcataactaacagggtgacctt
ccccatgagtgcctttatctcattaaaagcacatgtaatgttagtttttt
tttttttttttttttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_56213983_56215170
seq2: B6Ng01-309L02.b_44_1226

seq1  GAATTCCAAAATATAGTCCCAAAGTAAATTGTATTGAAGTGGATTATTAC  50
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  GAATTCCAAAATGTAGTCCCAAAGTCAATTGTATTGAAGTGGATTATTAC  50

seq1  AATAATAGAATTCTATTGACCTACAACTTTTTTAGAAATTTGTGTATTAT  100
      | | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATAGAATTCTATTGACCTACAACTTTTTTAGAAATTTGTGTATTAT  100

seq1  ATTACAGATTGAAGATACACAGTGAATTAACATTTTAAAAAAATAAGTGT  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACGGATTGAAGATACACAGTGAATTAACATTTTAAAAAAATAAGTGT  150

seq1  CTTAAACCTTAGACTTGAAATATCTGTACTCAGTCAGGAACCTTGCACAA  200
      || |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACCTTACACTTGAAATATCTGTACTCAGTCAGGAACCTTGCACAA  200

seq1  ATATAATTCTTCAAATGACTATGAAACTGTGTTTATAATAATAACTAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTCTTCAAATGACTATGAAACTGTGTTTATAATAATAACTAAAG  250

seq1  AAAATATACTTAAAATATAAATTTCTTTAGTAGTCTAAACTGTTATTTTT  300
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAATATACTTAAAATATAAATTTCTTTAGTAGTCTAAACTGGTATTTTT  300

seq1  GTCTTTATGGAAGGATCACAACTATAATTAATGCATAACAAAAGAATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATGGAAGGATCACAACTATAATTAATGCATAACAAAAGAATTTG  350

seq1  CATTGTGAGTGGTTTAATTATTCATTTAGTGACTAATGCTGGCTACCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGAGTGGTTTAATTATTCATTTAGTGACTAATGCTGGCTACCACT  400

seq1  AATACACTTTTTTAAAAAAAGGAAAACCAACTATTTAATCACTCTAAATG  450
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATACACTTTTTTAGAAAAAGGAAAACCAACTATTTAATCACTCTAAATG  450

seq1  TTTCATAAATTAAAGGGCTTTTAAGGGCTACCACTTACATTCAAAACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAAATTAAAGGGCTTTTAAGGGCTACCACTTACATTCAAAACTTT  500

seq1  TAACATACATTTCTAATTACTAAAAATTAGAAACGACAGATTATAATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATACATTTCTAATTACTAAAAATTAGAAACGACAGATTATAATTTT  550

seq1  TTTCATGGAGTAGAATCCATAAATGTTTATATGGTGGTTATTTTCCTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGAGTAGAATCCATAAATGTTTATATGGTGGTTATTTTCCTGAT  600

seq1  TGTTATTATCAGTACTAGTTAAGTGAGTCATGTATTAGATATATGAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTATCAGTACTAGTTAAGTGAGTCATGTATTAGATATATGAAATG  650

seq1  AATTATAAATTTCAGTATTGTGGAAACATTACCCAAATACCTTATTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAAATTTCAGTATTGTGGAAACATTACCCAAATACCTTATTTTTT  700

seq1  CTTAAATACCCAGGATTTGTGTAACAGCCCCTTCGTCTCCAACCAATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATACCCAGGATTTGTGTAACAGCCCCTTCGTCTCCAACCAATATA  750

seq1  ATCGCTTTTCATTGGAAAATCTTGTGATGACTTAGTATCTGTAAGCTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTTTTCATTGGAAAATCTTGTGATGACTTAGTATCTGTAAGCTTTC  800

seq1  TGGTTAAGTCTTACAAATACTCCTTTTAGGATTTATTGAGAACGAAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAGTCTTACAAATACTCCTTTTAGGATTTATTGAGAACGAAAAAT  850

seq1  CCAGAAGTCTGAG-AAAAAAAAAAAGATGATAAAACTGATGCTTTGTTGC  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTCTGAGAAAAAAAAAAAAGATGATAAAACTGATGCTTTGTTGC  900

seq1  TGTTGGGCTACAAACACAACTTTGG-TTGTATGTAATGCTACCAAAACCA  948
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGTTGGGCTACAAACACAACTTTGGTTTGTATGTAATGCTACCAAAACCA  950

seq1  ACAGCCCTAAATTTATCTAACCTTCTG-ATAGTGAATGAACAAAGGTAAA  997
      ||||||||||||||||||||||||||| |||||||||| ||||| |||||
seq2  ACAGCCCTAAATTTATCTAACCTTCTGAATAGTGAATG-ACAAA-GTAAA  998

seq1  AATAACAGGCTAGTTATAAACTAGTACTATGGCAATGACATTGTGAATTA  1047
      | ||||| |||||||||||||||||||||||||||||||| |||||||||
seq2  ATTAACA-GCTAGTTATAAACTAGTACTATGGCAATGACA-TGTGAATTA  1046

seq1  TTTAAAAAGGGCATATTCAATGTGACCATA-GAGCCATCAATCATAATAG  1096
      |||  ||||||||||||| ||||||||||| ||||||||| |||||||| 
seq2  TTT-CAAAGGGCATATTC-ATGTGACCATAGGAGCCATCATTCATAATAA  1094

seq1  ACATTGATGAGA-AAAGAGGTTTCAGCCACTTCCTATC-TGCAAGGAGAA  1144
      ||| |||||||| ||||| | ||||||||||  ||||| |||||||| ||
seq2  ACA-TGATGAGAGAAAGA-GCTTCAGCCACT--CTATCTTGCAAGGA-AA  1139

seq1  CAATTCTA-TCTCACAGGTAGCTATGAAGT-GCCGGGTGACCTGAT  1188
      | |||||| |||| || ||||||||  ||| ||||||| |||||||
seq2  C-ATTCTATTCTC-CACGTAGCTATTGAGTGGCCGGGTAACCTGAT  1183

seq1: chr17_37264506_37265127
seq2: B6Ng01-309L02.g_115_736 (reverse)

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAAAACTAACATTACATGTGCTTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAAAAAACTAACATTACATGTGCTTTTAA  50

seq1  TGAGATAAAGGCACTCATGGGGAAGGTCACCCTGTTAGTTATGACACCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAAAGGCACTCATGGGGAAGGTCACCCTGTTAGTTATGACACCTA  100

seq1  TGCATACTGGGCTTCCTATGAGTTTACTGTGGTCATATACTCTTGACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACTGGGCTTCCTATGAGTTTACTGTGGTCATATACTCTTGACTAT  150

seq1  CTTTTGTGACAATTTAAGGATTAACAATTGTGTCCATGATCACTATATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGACAATTTAAGGATTAACAATTGTGTCCATGATCACTATATTA  200

seq1  TATGGAATGAAGTCTCACTATTATCCTCTCAGTCTTAAGAGAGAACCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAATGAAGTCTCACTATTATCCTCTCAGTCTTAAGAGAGAACCACA  250

seq1  AGCCGGGTGGTGGTGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGGTGGTGGTGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGC  300

seq1  AGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTTACAGAGTGAGTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTTACAGAGTGAGTTCCT  350

seq1  GGATAGCCAGAGCTACACAGAGAAACCCTGTCTCGAAAAAACAAAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCCAGAGCTACACAGAGAAACCCTGTCTCGAAAAAACAAAACAAA  400

seq1  ACAAAACAAAAACAAACAAACAAACAAACAAACAAAAAGAGAACCACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAAAACAAACAAACAAACAAACAAACAAAAAGAGAACCACAGC  450

seq1  CCCCATCCTTCAACACCCAAAGGGAATAGCAAAGAGCTGGTGGAAAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCCTTCAACACCCAAAGGGAATAGCAAAGAGCTGGTGGAAAAACT  500

seq1  ATAAGAACCAAAGTCAAGAGGAGTGTTGTATATAGTGATGCTAGTTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAACCAAAGTCAAGAGGAGTGTTGTATATAGTGATGCTAGTTCACT  550

seq1  GAATCCTTTCCATAGTAACTCCGTCTTGCAGCAAGACAAATTTTAGCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTTTCCATAGTAACTCCGTCTTGCAGCAAGACAAATTTTAGCTTC  600

seq1  TCTTCATTCCATACTATAGAAA  622
      ||||||||||||||||||||||
seq2  TCTTCATTCCATACTATAGAAA  622