BAC Information

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BAC

Clone NameB6Ng01-312F13
Chromosome17 (Build37)
Map Location 52,838,833 - 52,840,016
singlet/doubletsinglet
Overlap genenone
Upstream geneSatb1, EG628919, LOC672987, EG328839
Downstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312F13.bB6Ng01-312F13.g
ACCGA103838GA103839
length1,1771,169
definitionB6Ng01-312F13.b B6Ng01-312F13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccttcattacaaatgtattaataaagtgtacaacttctcttaaa
aagtaagaaagatggaataagataatctgcttattttcatatcatataat
aatgaccagctctttcacactttccattttatttaatacctttttctttt
tatgtgcagaacaagaatgttgtaaactaacagcaaatttagctactgga
aaagggacctggtggctgcttccctggagccatgagattgttctccgtta
tctgactcttatttgactaaccctttcttattcagtggtagcttggcttc
ccttttatcctaaggcgtcctttagtagattgaaagtatttaacagtaga
ttgctgagccattcctgcttctgatctgagccatggatccttcaagtaat
ttgtgcctaggaactgattctgtgaatggcgcattctcttagcttccttt
ccatcaaaggacttcattctgaacatccctttttctcctagaaataccat
ggtgcccttgctaggtaaatagagcgctgcctgaaatattaaatcaatat
atcaaactaattgcaaggagtccaggcctgacaccaaagatgatctgcaa
cagcaactccagacagaggtgatgctgccacatgggttctgaaacacttt
gaactgtactgttgagacatgtgttgctctagcccaattagaatttattt
ttagcaagaaaatatttgtgaggttatcagtggcacagtgttctttcttt
tcttttttaaaggaagaaataatgagtctgtagcaagataactgaatggt
cagcaaacaaaatacaccgttcacttttatttacctcaatcaatagcttg
aagatgctttaattacagtttggttgtcaagctgattgccaagaagataa
tctgactctgagttttattttccccagcaatatccttcatttagaatctg
gacttgacatatttcaacaactgcattgaaggaatttttatataggattt
gagttacagaagcacagggtacatgtgctgagtagttccattcatgtgca
acaacgagtctgactctatttccttaccgacttcagccttatcaagctca
gacagaatttaagaaaggtctagtagtctatagagtctatgggaccttag
ttaggttaagccgaatccaataagaaa
gaattctcagtatggttataaattcatacacatttgctcttccaggctct
tgttgaatttctctttattgctgatgatgggaacaaagacagatgaagtg
atcttagaagctacccattcaagatggtagatgagccatagcctggactc
caaaattattgtgtaagacttctctctctctcttctcctcctccctcccc
acttcgttcacatacatggccccaatcatgcaatgttaactgccctcttt
ttcaccaccctgtacggcaggtgacacacccagaagggtgtctggctgtc
tagcatcagtattctttcaccatcatgagaggagactaccccacttttga
cctccagtccttccttttcctttgcagctctgtatcagaaggtgagcagc
aagcagcatcttggccacatcatttctgtagctatccatggtgctgcttg
gtaaaagaaggcaaggaggcctaacatcccatgactaatagattaaaaac
ctgttgtggatggccctggtgctgtttgtattttaatgttaattctgttt
tcccaggaggggttgtctggaacaaggaattaatcacacattcaggtgac
ttcttgtgaaatttcccctaatgaataaaggagccaatcactgggagagt
aggtaggacttctggcttggacagaagaaaaggggaggcaggagacatag
gggcttttttgatgtggacagtgtagtggctattcctggctgtcaacttg
actatatttggaatgaactacaatccagaattggtaaggctcacaagtga
cccttatctggaggcttggagatagaagtttctgatctggatcttggtat
ggagatcttgaggcatagtggctatagactccagaagattaaatctccga
gttcaaggtcatccaggattaaaggtgtggtagaacacacctttaatctg
ggctacacctttctgctgagacgatgtaaggacattggaagaatggagtc
tggctctgctctttgtctgcttgctgtgtgagactgatgactgctatatc
ttgactcaatccacagctactatgacatgtgggatggcctgcagactgta
agtcatcatagtcctactataagagacctatccataggctcctgtgtgac
ctctttgagagaaaaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_52838833_52840016
seq2: B6Ng01-312F13.b_46_1222

seq1  GAATTCCCTTCATTACAAATGTATTAATAAAGTGTACAACTTCTCTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCATTACAAATGTATTAATAAAGTGTACAACTTCTCTTAAA  50

seq1  AAGTAAGAAAGATGGAATAAGATAATCTGCTTATTTTCATATCATATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGAAAGATGGAATAAGATAATCTGCTTATTTTCATATCATATAAT  100

seq1  AATGACCAGCTCTTTCACACTTTCCATTTTATTTAATACCTTTTTCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCAGCTCTTTCACACTTTCCATTTTATTTAATACCTTTTTCTTTT  150

seq1  TATGTGCAGAACAAGAATGTTGTAAACTAACAGCAAATTTAGCTACTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCAGAACAAGAATGTTGTAAACTAACAGCAAATTTAGCTACTGGA  200

seq1  AAAGGGACCTGGTGGCTGCTTCCCTGGAGCCATGAGATTGTTCTCCGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGACCTGGTGGCTGCTTCCCTGGAGCCATGAGATTGTTCTCCGTTA  250

seq1  TCTGACTCTTATTTGACTAACCCTTTCTTATTCAGTGGTAGCTTGGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCTTATTTGACTAACCCTTTCTTATTCAGTGGTAGCTTGGCTTC  300

seq1  CCTTTTATCCTAAGGCGTCCTTTAGTAGATTGAAAGTATTTAACAGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTATCCTAAGGCGTCCTTTAGTAGATTGAAAGTATTTAACAGTAGA  350

seq1  TTGCTGAGCCATTCCTGCTTCTGATCTGAGCCATGGATCCTTCAAGTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAGCCATTCCTGCTTCTGATCTGAGCCATGGATCCTTCAAGTAAT  400

seq1  TTGTGCCTAGGAACTGATTCTGTGAATGGCGCATTCTCTTAGCTTCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCTAGGAACTGATTCTGTGAATGGCGCATTCTCTTAGCTTCCTTT  450

seq1  CCATCAAAGGACTTCATTCTGAACATCCCTTTTTCTCCTAGAAATACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAAGGACTTCATTCTGAACATCCCTTTTTCTCCTAGAAATACCAT  500

seq1  GGTGCCCTTGCTAGGTAAATAGAGCGCTGCCTGAAATATTAAATCAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCCTTGCTAGGTAAATAGAGCGCTGCCTGAAATATTAAATCAATAT  550

seq1  ATCAAACTAATTGCAAGGAGTCCAGGCCTGACACCAAAGATGATCTGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACTAATTGCAAGGAGTCCAGGCCTGACACCAAAGATGATCTGCAA  600

seq1  CAGCAACTCCAGACAGAGGTGATGCTGCCACATGGGTTCTGAAACACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACTCCAGACAGAGGTGATGCTGCCACATGGGTTCTGAAACACTTT  650

seq1  GAACTGTACTGTTGAGACATGTGTTGCTCTAGCCCAATTAGAATTTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTACTGTTGAGACATGTGTTGCTCTAGCCCAATTAGAATTTATTT  700

seq1  TTAGCAAGAAAATATTTGTGAGGTTATCAGTGGCACAGTGTTCTTTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAGAAAATATTTGTGAGGTTATCAGTGGCACAGTGTTCTTTCTTT  750

seq1  TCTTTTTTAAAGGAAGAAATAATGAGTCTGTAGCAAGATAACTGAATGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTAAAGGAAGAAATAATGAGTCTGTAGCAAGATAACTGAATGGT  800

seq1  CAGCAAACAAAATACACCGTTCACTTTTATTTACCTCAATCAATAGCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAACAAAATACACCGTTCACTTTTATTTACCTCAATCAATAGCTTG  850

seq1  AAGATGCTTTAA-TACAGTTTGGTTGTCAAGCTGATTGCCAAGAAGATAA  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGATGCTTTAATTACAGTTTGGTTGTCAAGCTGATTGCCAAGAAGATAA  900

seq1  TCTGACTCTGAGTTTTATTTTCCCCAGCAATATCCTTCATTTAGAATCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCTGAGTTTTATTTTCCCCAGCAATATCCTTCATTTAGAATCTG  950

seq1  GACTTGACAATATTTCAACAACTGCATTGAAGGAATTTTTAATATAGGAT  999
      |||||||| ||||||||||||||||||||||||||||||| |||||||||
seq2  GACTTGAC-ATATTTCAACAACTGCATTGAAGGAATTTTT-ATATAGGAT  998

seq1  TTGAGTTACAGAAGCACAAGGGTACAATGTGCTGAGGTAGTTTCCATTCA  1049
      ||||||||||||||||| ||||||| ||||||||| |||| |||||||||
seq2  TTGAGTTACAGAAGCAC-AGGGTAC-ATGTGCTGA-GTAG-TTCCATTCA  1044

seq1  TGTGCAACAACGAGGTCTGAACTCTAATTTCCCTACCGACTTCAG-CTTA  1098
      ||||||||||||| ||||| ||||| |||||| |||||||||||| ||||
seq2  TGTGCAACAACGA-GTCTG-ACTCT-ATTTCCTTACCGACTTCAGCCTTA  1091

seq1  TCAGGCTCAGACAGAATTTAAGAAA-GTCTAGTAGTCTATAGAGTTCTAT  1147
      ||| ||||||||||||||||||||| |||||||||||||||||| |||||
seq2  TCAAGCTCAGACAGAATTTAAGAAAGGTCTAGTAGTCTATAGAG-TCTAT  1140

seq1  TGGGGAACTTAGTTAAGTTAAGCAGA--TCAATAAGAAA  1184
        |||| |||||||| ||||||| ||   ||||||||||
seq2  --GGGACCTTAGTTAGGTTAAGCCGAATCCAATAAGAAA  1177