BAC Information

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BAC

Clone NameB6Ng01-312L13
Chromosome17 (Build37)
Map Location 51,941,273 - 52,079,518
singlet/doubletdoublet
Overlap geneSatb1, EG628919
Upstream geneTbc1d5, LOC100043451, LOC100043452
Downstream geneLOC672987, EG328839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312L13.bB6Ng01-312L13.g
ACCGA104121GA104122
length5411,121
definitionB6Ng01-312L13.b B6Ng01-312L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,078,972 - 52,079,518)(51,941,273 - 51,942,392)
sequence
caatcagcccttaaagctcacatgttgccttctggtaagatctgtcacaa
taaatcaaatgtcggtcatcccccataatggttaccaagagtagagtgct
gatttctcaaagcttgtgaaataaataagatcacctttccttgcttgttc
attttaattagactacactatttcttaccatttcacgtatttaccaagcc
ctttgttcacccaggagaacatggcaatgagccagttggctttataccta
ctaaaaatggcacctggaaagttaagccaatttttgttcttgagaaaagt
attaacccactattaatagtttttctaagaacaaacaaacaaacaaacaa
acaagcaaacaaaacgttctctgggcaaaaatggtcaggagctggccatg
agatggagacgagactgcggtttggacagcactgggaccaagctaaacac
tttcataggccaaagttcaggcttcagtctccacaaggaaaagtgggacg
ggaaggagggaagaacgcagggagggagggagagagggagg

gaattcttagtaacaacaccatggttcattctaggtcagccttccaattt
tcaaatgctaataaccaggcaacatgctctctggagttgtcttcaccaca
tggtcccagaagtaagttgctctgcttcactgtgccatcagactgactta
gctattgtagattcattcaaattacttttattttctggttatagattcac
atcctctctatttcaacaatgaggaaaagatagctgctgatgggataaat
gaatttatttaaaaaaaaaaagttttgtctcaagaaaatgaacattcaat
aatacagagtgtctgtgtagtctgtggctttagcttgatccagaattgct
cctgtcttagaattgctaactgagatcaaagcagaactgcaggcctccaa
tgcagcaaggctgaacacatgaactactgggcaacagcagtgtaaagtcc
aaaggcttcctcttaaggtacccaggaatgctcaggagccttgcacaaaa
acatacatggaatgaatacttgctcttcagcatcataaagacaagctagg
aaaaactagtcactccagaaatgcttatgcagagtaatgcaagttcaaag
gactggcggactaatattcaaaattacattttaaacttgaattcaaagaa
aactttaaacgagcactccaatttttttactgtaacctttaatgtcctca
gcagaggtgagggtgccgaggagtgatgatgctgtaccatactctatggt
gactatcagctgtgtcatcagaaagaatgtttggctttaaacttggcaaa
aacctagagtttccagtcctttaccaaaaactcattccagaaaatgaaat
tcaacaataataaatctgtctcatttcaagaagaaaagaataggagtcca
tttttaaaaagtgaactaattcttcaaaattgggttgtaaactcctaatg
ggcaataattatgggaccttttgtccaggaaagagattttcttaatattt
atattaacatacatacataatttacagttatttttcagcaaacacttctc
attttgtgtactcgagcagcaccctacaacaggtagcatgatctcggcag
gcagcgttcgtaaggctctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_52078972_52079518
seq2: B6Ng01-312L13.b_52_598 (reverse)

seq1  CCTCCCTCTCTCCCTCCCTCCCTGCGTTCTTCCCTCCTTCCCGTCCCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCTCTCCCTCCCTCCCTGCGTTCTTCCCTCCTTCCCGTCCCACT  50

seq1  TTTCCTTGTGGAGACTGAAGCCTGAACTTTGGCCTATGAAAGTGTTTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGTGGAGACTGAAGCCTGAACTTTGGCCTATGAAAGTGTTTAGC  100

seq1  TTGGTCCCAGTGCTGTCCAAACCGCAGTCTCGTCTCCATCTCATGGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCCAGTGCTGTCCAAACCGCAGTCTCGTCTCCATCTCATGGCCAG  150

seq1  CTCCTGACCATTTTTGCCCAGAGAACGTTTTGTTTGCTTGTTTGTTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGACCATTTTTGCCCAGAGAACGTTTTGTTTGCTTGTTTGTTTGTT  200

seq1  TGTTTGTTTGTTCTTAGAAAAACTATTAATAGTGGGTTAATACTTTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTCTTAGAAAAACTATTAATAGTGGGTTAATACTTTTCTC  250

seq1  AAGAACAAAAATTGGCTTAACTTTCCAGGTGCCATTTTTAGTAGGTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAAAAATTGGCTTAACTTTCCAGGTGCCATTTTTAGTAGGTATAA  300

seq1  AGCCAACTGGCTCATTGCCATGTTCTCCTGGGTGAACAAAGGGCTTGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACTGGCTCATTGCCATGTTCTCCTGGGTGAACAAAGGGCTTGGTA  350

seq1  AATACGTGAAATGGTAAGAAATAGTGTAGTCTAATTAAAATGAACAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGTGAAATGGTAAGAAATAGTGTAGTCTAATTAAAATGAACAAGCA  400

seq1  AGGAAAGGTGATCTTATTTATTTCACAAGCTTTGAGAAATCAGCACTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGTGATCTTATTTATTTCACAAGCTTTGAGAAATCAGCACTCTA  450

seq1  CTCTTGGTAACCATTATGGGGGATGACCGACATTTGATTTATTGTGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGTAACCATTATGGGGGATGACCGACATTTGATTTATTGTGACAG  500

seq1  ATCTTACCAGAAGGCAACATGTGAGCTTTAAGGGCTGATTGGAATTC  547
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACCAGAAGGCAACATGTGAGCTTTAAGGGCTGATTGGAATTC  547


seq1: chr17_51941273_51942392
seq2: B6Ng01-312L13.g_69_1189

seq1  GAATTCTTAGTAACAACACCATGGTTCATTCTAGGTCAGCCTTCCAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTAACAACACCATGGTTCATTCTAGGTCAGCCTTCCAATTT  50

seq1  TCAAATGCTAATAACCAGGCAACATGCTCTCTGGAGTTGTCTTCACCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGCTAATAACCAGGCAACATGCTCTCTGGAGTTGTCTTCACCACA  100

seq1  TGGTCCCAGAAGTAAGTTGCTCTGCTTCACTGTGCCATCAGACTGACTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCAGAAGTAAGTTGCTCTGCTTCACTGTGCCATCAGACTGACTTA  150

seq1  GCTATTGTAGATTCATTCAAATTACTTTTATTTTCTGGTTATAGATTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTGTAGATTCATTCAAATTACTTTTATTTTCTGGTTATAGATTCAC  200

seq1  ATCCTCTCTATTTCAACAATGAGGAAAAGATAGCTGCTGATGGGATAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTCTATTTCAACAATGAGGAAAAGATAGCTGCTGATGGGATAAAT  250

seq1  GAATTTATTTAAAAAAAAAAAGTTTTGTCTCAAGAAAATGAACATTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATTTAAAAAAAAAAAGTTTTGTCTCAAGAAAATGAACATTCAAT  300

seq1  AATACAGAGTGTCTGTGTAGTCTGTGGCTTTAGCTTGATCCAGAATTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGAGTGTCTGTGTAGTCTGTGGCTTTAGCTTGATCCAGAATTGCT  350

seq1  CCTGTCTTAGAATTGCTAACTGAGATCAAAGCAGAACTGCAGGCCTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTAGAATTGCTAACTGAGATCAAAGCAGAACTGCAGGCCTCCAA  400

seq1  TGCAGCAAGGCTGAACACATGAACTACTGGGCAACAGCAGTGTAAAGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAAGGCTGAACACATGAACTACTGGGCAACAGCAGTGTAAAGTCC  450

seq1  AAAGGCTTCCTCTTAAGGTACCCAGGAATGCTCAGGAGCCTTGCACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTTCCTCTTAAGGTACCCAGGAATGCTCAGGAGCCTTGCACAAAA  500

seq1  ACATACATGGAATGAATACTTGCTCTTCAGCATCATAAAGACAAGCTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGGAATGAATACTTGCTCTTCAGCATCATAAAGACAAGCTAGG  550

seq1  AAAAACTAGTCACTCCAGAAATGCTTATGCAGAGTAATGCAAGTTCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTAGTCACTCCAGAAATGCTTATGCAGAGTAATGCAAGTTCAAAG  600

seq1  GACTGGCGGACTAATATTCAAAATTACATTTTAAACTTGAATTCAAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCGGACTAATATTCAAAATTACATTTTAAACTTGAATTCAAAGAA  650

seq1  AACTTTAAACGAGCACTCCAATTTTTTTACTGTAACCTTTAATGTCCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAAACGAGCACTCCAATTTTTTTACTGTAACCTTTAATGTCCTCA  700

seq1  GCAGAGGTGAGGGTGCCGAGGAGTGATGATGCTGTACCATACTCTATGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGTGAGGGTGCCGAGGAGTGATGATGCTGTACCATACTCTATGGT  750

seq1  GACTATCAGCTGTGTCATCAGAAAGAATGTTTGGCTTTAAACTTGGCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATCAGCTGTGTCATCAGAAAGAATGTTTGGCTTTAAACTTGGCAAA  800

seq1  AACCTAGAGTTTCCAGTCCTTTACCAAAAACTCATTCCAGAAAATGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGAGTTTCCAGTCCTTTACCAAAAACTCATTCCAGAAAATGAAAT  850

seq1  TCAACAATAATAAATCTGTCTCATTTCAAGAAGAAAAGAATAGGAGTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAATAATAAATCTGTCTCATTTCAAGAAGAAAAGAATAGGAGTCCA  900

seq1  TTTTTAAAAAGTGAACTAATTCTTCAAAATT-GGTTGTAAACTCCTAATG  949
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTTTAAAAAGTGAACTAATTCTTCAAAATTGGGTTGTAAACTCCTAATG  950

seq1  GGCAATAATTAT-GGACCTTTTGTTCCAGGAAAGAGA-TTTCTT-ATATT  996
      |||||||||||| |||||||||| ||||||||||||| |||||| |||||
seq2  GGCAATAATTATGGGACCTTTTG-TCCAGGAAAGAGATTTTCTTAATATT  999

seq1  TATAATTAACATACATACATAATTTACAGTTA-TTTTCAGCAAACACTTT  1045
      ||| |||||||||||||||||||||||||||| |||||||||||||| ||
seq2  TAT-ATTAACATACATACATAATTTACAGTTATTTTTCAGCAAACAC-TT  1047

seq1  CTCATTTTGTGGTACTCGAGCAAGCACCCTACAACA-GTAGCATGATCTT  1094
      |||||||||| |||||||||| |||||||||||||| ||||||||||| |
seq2  CTCATTTTGT-GTACTCGAGC-AGCACCCTACAACAGGTAGCATGATC-T  1094

seq1  CCGCAGCCAGCGTTCGGAA-GCTCTGC  1120
      | |||| ||||||||| || |||||||
seq2  CGGCAGGCAGCGTTCGTAAGGCTCTGC  1121


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