BAC Information

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BAC

Clone NameB6Ng01-312M11
Chromosome17 (Build37)
Map Location 51,182,314 - 51,182,763
singlet/doubletsinglet
Overlap geneTbc1d5
Upstream geneRftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432
Downstream geneLOC100043451, LOC100043452, Satb1, EG628919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312M11.bB6Ng01-312M11.g
ACCGA104165GA104166
length4541,100
definitionB6Ng01-312M11.b B6Ng01-312M11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
taagatgctggttcaatccctgggaatggaccaccaaccaaagagtacac
atggagggacccatgactctagctgcatttgtggcaaaggttgggcttgt
tggacaacagtggtaggagatgcccttgggcctgaaggtgctcaatgccc
cagtatagaagggagtgggtggatgagtgggggagcaccctcatagaagc
aggggaagaagggatgggatgggggctttccataggggagacctggaaag
gggaaaacatttgaaatgtaaattaagcaaatatccaatagaatgctggt
tcaagactagtctccaggaaaaactgttttttattaattttttatcttgt
caatgtttgtacactaaaatccccccactatagctaaattttccataatg
tttaggtggtaatgctattttccttaagaattcataagtttgtatatttg
gata
gaattctgtatttgatgtgtgataacggcccaacattgtcttccacatgt
aaatatccatttctcccaacactatttattgaagaaaagggccttttgct
attgtgtgttattgactcctttataaaataccaatttagatgtagagcat
ggtcctctttggaggatttctagatgattccattggtctaaacacctact
cgtatcctagtatcaggctacttaaaaaaaattattattattttagcttt
acagtatattttgaaatcaggtagtattgctgttccgagctttactcttc
ttctctggccattttgatcctaggtggttccatttaagttaaaaggctaa
ctttttacttctacaaagattaatactgaaatcttaatgtttattgcatt
ggatatgtgcattactttgggtaatatatttgtttcaacaatgttaattc
ttctagcacatgaaaatatgttagttactgttctattgttatgaaaagat
accatgaccaaggcaactcttagaaaatatttaattggggtttgcttaca
attttagaaagctagtcttatgatcatcatgaagaaaatcaggcagacat
ggcactggtgtggtatctgaaaacttccttcatgatccacaggcaacaga
ccaaaagagaatgatactgggcctaacatgggccttggaaacctcaaagc
cctgggaaacactgtctccaacaaggccacacccactccaacaaggctac
agctgctccagcaaggccatgcctcttcttctcaaacattttgatactgg
aggactatacgtgcaaatacatggtggaggactattttcattcaaccacc
acaacatgaagatacttttatttggtctcttcaatttatccctaatatta
gttcatgtacaactatctccttttgctctggcttatgttaatctgattgg
gatgaggcatcatcatgatcttgttcctacattcgaactcattgagggtc
aatcatcatgtgaatttaaacattccaatagattgttctaacctgcggtc
aggttcaggctaggtcgactgtagttaggcagttgatagaactagttgga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_51182314_51182763
seq2: B6Ng01-312M11.b_46_497

seq1  GAATTCTAAGATGCTGGTTCAATCCCTGGGAATGGACCACCAACCAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGATGCTGGTTCAATCCCTGGGAATGGACCACCAACCAAAGA  50

seq1  GTACACATGGAGGGACCCATGACTCTAGCTGCATTTGTGGCAAAGGTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACATGGAGGGACCCATGACTCTAGCTGCATTTGTGGCAAAGGTTGG  100

seq1  GCTTGTTGGACAACAGTGGTAGGAGATGCCCTTGGGCCTGAAGGTGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTGGACAACAGTGGTAGGAGATGCCCTTGGGCCTGAAGGTGCTCA  150

seq1  ATGCCCCAGTATAGAAGGGAGTGGGTGGATGAGTGGGGGAGCACCCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCAGTATAGAAGGGAGTGGGTGGATGAGTGGGGGAGCACCCTCAT  200

seq1  AGAAGCAGGGGAAGAAGGGATGGGATGGGGGCTTTCCATAGGGGAGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGGGGAAGAAGGGATGGGATGGGGGCTTTCCATAGGGGAGACCT  250

seq1  GGAAAGGGGAAAACATTTGAAATGTAAATTAAGCAAATATCCAATAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGGAAAACATTTGAAATGTAAATTAAGCAAATATCCAATAGAAT  300

seq1  GCTGGTTCAAGACTAGTCTCCAGGAAAAACTGTTATAAATTAAGTTTTTA  350
      |||||||||||||||||||||||||||||||||| |  ||||| ||||||
seq2  GCTGGTTCAAGACTAGTCTCCAGGAAAAACTGTTTTTTATTAATTTTTTA  350

seq1  TCTTGTCAATG-TTGTACACAAAAATCCCCCCACTATAGCTAAA-TTTCC  398
      ||||||||||| |||||||| ||||||||||||||||||||||| |||||
seq2  TCTTGTCAATGTTTGTACACTAAAATCCCCCCACTATAGCTAAATTTTCC  400

seq1  ATAATGTTTAGGTGGTAATGTTATTTTCCTTAAGAATTCACAAGTCTGTA  448
      |||||||||||||||||||| ||||||||||||||||||| |||| ||||
seq2  ATAATGTTTAGGTGGTAATGCTATTTTCCTTAAGAATTCATAAGTTTGTA  450

seq1  TA  450
      ||
seq2  TA  452