gaattcttgaaattcttaggcaaatagatggaactagaaaatatcatcct
gagtgaggtaacccaatcacaaaataacacacatggtttgcactcactga
taagtgggtattagcccaaatgcttggaatacccaagatataattcacag
accacataaagctcaagaaggaagaccaaagtgtggatgcttcagtcctt
cttagaaaggggaacaaaatactcatgggagcaaatacagagacaaagtg
tggagcagagactgaaagaaaggccatccagagactgccacacctgggga
tccatcccactaaagtcaccaaacccagacacaattgtggatgccaagaa
gtgcatgctgacagaagcctaataaaactgtgtcctgagaggttctacaa
gagccttacaaatacagaggtggatgcttgcagctaaccactggactgag
catggggttcccattggggtccccaatagaggagttacagaaaggactga
aggagctgaaggatttgcaaccccataggaaaaacaatatgaaccctccc
cccagagctgtgtctctagttacatatgtagcagaggatggcttagttgt
ccatcaatgggaggagaggccctttgtcttgagaagattatatgccccag
tactggcgaataccagggacaggaagtgggagtgggtgggatgggga

gaattccttacagccttcacagatttccactcccacatgtgaaatgggaa
atgaattctcccatgtcgctggtagtctgctaaaatatcacttcatcaat
acattcagagatgtttatcttatataaagaggttattataaatgtgcaat
ttaaataacataccccacataaataggaaagaatatgaacaggtaagtta
caaaaaataagtttgtatttccattaagaattaaaagctcagttatataa
atcctaataaaacaatagtgtttcctgttaaagcaaaactctcagtcatg
tttaaatgcccaaacacataaaagggaaatgactctatttatttacacag
aaatattaagccagaaatgaaaaggcttctattttcatatacaagaatat
taaaccatacaaaatgattcccagggtctgcatgtggaacaaaactaaat
ctatgagtttattcttaaatatatatacacacccaccctcacatccacat
acaccccaacacacacacacacacacacacacacacacacacacacacac
tacaccaaaccagacaaaaatcatgttttgtaagcatgtccacatgctac
agggtttatcgtattgtggaaaagatgcctcttgctggtatctagagagg
ccaatgcattacttcctcccctcggttttagtcctgttctctgaccctta
aacttcttttctccacaactgctcatcttgcttaaagccccacccttgtt
ccttcactaagggattcttccaaagaaaatgaatttggtaacgtgactct
tctgaattgtgttttgaatgcatttgtctactgtcaatgctgactactaa
attccctcagtaatgctagaatgttattatgttctttaaataaagttgct
cagaacaaataactaaaattctcacataattctacttaagactataaagt
tctaagtgaaattcaagtaaaaatgataaacttttgaaaaactgaaaaaa
acccagaatgtcatttaactcatatttcatgtatatattctacctatttt
ttcatacacaataaaggtatatagattcctgctctttctcctcctaactt
gctatatacgcgattgtcctgtata

seq1: chr17_42541034_42542178
seq2: B6Ng01-316M11.g_68_1192 (reverse)

seq1  TATACAGAAACATACGCGTATAATTAGCAAAATTAAGGAGGAGAAAGAGG  50
      |||||||  |||  ||||||||  ||||  || | ||||||||||||| |
seq2  TATACAG-GACAATCGCGTATA--TAGC--AAGTTAGGAGGAGAAAGA-G  44

seq1  CAGGGAAACCTATATACCTTTTATTGTGTTATGAAACCAAATAGGTAGAT  100
      ||||  || ||||||||| ||||||||| |||||||  ||||||||||| 
seq2  CAGG--AATCTATATACC-TTTATTGTG-TATGAAA--AAATAGGTAGA-  87

seq1  ATTAATTAACATTGAAATATGAAGTTAAATGACATTCTGGTTTTTTTTTC  150
      ||  ||  ||| ||||||||| ||||||||||||||||||  ||||||||
seq2  AT--ATATACA-TGAAATATG-AGTTAAATGACATTCTGG-GTTTTTTTC  132

seq1  AGTTTTTCAAAAGTTTATCATTTTTACTTTGAATTTTCACTTAGAACTTT  200
      ||||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  AGTTTTTCAAAAGTTTATCATTTTTAC-TTGAA-TTTCACTTAGAACTTT  180

seq1  ATAGTCTTAAGTAGAATTATGTGAGAATTTTAGTTATTTGTTCTGAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTTAAGTAGAATTATGTGAGAATTTTAGTTATTTGTTCTGAGCAA  230

seq1  CTTTATTTAAAGAACATAATAACATTCTAGCATTACTGAGGGAATTTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTAAAGAACATAATAACATTCTAGCATTACTGAGGGAATTTAGT  280

seq1  AGTCAGCATTGACAGTAGACAAATGCATTCAAAACACAATTCAGAAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCATTGACAGTAGACAAATGCATTCAAAACACAATTCAGAAGAGT  330

seq1  CACGTTACCAAATTCATTTTCTTTGGAAGAATCCCTTAGTGAAGGAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTACCAAATTCATTTTCTTTGGAAGAATCCCTTAGTGAAGGAACAA  380

seq1  GGGTGGGGCTTTAAGCAAGATGAGCAGTTGTGGAGAAAAGAAGTTTAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGCTTTAAGCAAGATGAGCAGTTGTGGAGAAAAGAAGTTTAAGG  430

seq1  GTCAGAGAACAGGACTAAAACCGAGGGGAGGAAGTAATGCATTGGCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGAACAGGACTAAAACCGAGGGGAGGAAGTAATGCATTGGCCTCT  480

seq1  CTAGATACCAGCAAGAGGCATCTTTTCCACAATACGATAAACCCTGTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATACCAGCAAGAGGCATCTTTTCCACAATACGATAAACCCTGTAGC  530

seq1  ATGTGGACATGCTTACAAAACATGATTTTTGTCTGGTTTGGTGTAGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGACATGCTTACAAAACATGATTTTTGTCTGGTTTGGTGTAGTGTG  580

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGGGTGTATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGGGTGTATGTG  630

seq1  GATGTGAGGGTGGGTGTGTATATATATTTAAGAATAAACTCATAGATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGAGGGTGGGTGTGTATATATATTTAAGAATAAACTCATAGATTTA  680

seq1  GTTTTGTTCCACATGCAGACCCTGGGAATCATTTTGTATGGTTTAATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTCCACATGCAGACCCTGGGAATCATTTTGTATGGTTTAATATT  730

seq1  CTTGTATATGAAAATAGAAGCCTTTTCATTTCTGGCTTAATATTTCTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATATGAAAATAGAAGCCTTTTCATTTCTGGCTTAATATTTCTGTG  780

seq1  TAAATAAATAGAGTCATTTCCCTTTTATGTGTTTGGGCATTTAAACATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAGAGTCATTTCCCTTTTATGTGTTTGGGCATTTAAACATGA  830

seq1  CTGAGAGTTTTGCTTTAACAGGAAACACTATTGTTTTATTAGGATTTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGTTTTGCTTTAACAGGAAACACTATTGTTTTATTAGGATTTATA  880

seq1  TAACTGAGCTTTTAATTCTTAATGGAAATACAAACTTATTTTTTGTAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAGCTTTTAATTCTTAATGGAAATACAAACTTATTTTTTGTAACT  930

seq1  TACCTGTTCATATTCTTTCCTATTTATGTGGGGTATGTTATTTAAATTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTTCATATTCTTTCCTATTTATGTGGGGTATGTTATTTAAATTGC  980

seq1  ACATTTATAATAACCTCTTTATATAAGATAAACATCTCTGAATGTATTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATAATAACCTCTTTATATAAGATAAACATCTCTGAATGTATTGA  1030

seq1  TGAAGTGATATTTTAGCAGACTACCAGCGACATGGGAGAATTCATTTCCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGATATTTTAGCAGACTACCAGCGACATGGGAGAATTCATTTCCC  1080

seq1  ATTTCACATGTGGGAGTGGAAATCTGTGAAGGCTGTAAGGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACATGTGGGAGTGGAAATCTGTGAAGGCTGTAAGGAATTC  1125