BAC Information

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BAC

Clone NameB6Ng01-316O22
Chromosome17 (Build37)
Map Location 50,978,272 - 50,979,407
singlet/doubletsinglet
Overlap geneTbc1d5
Upstream geneKif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432
Downstream geneLOC100043451, LOC100043452, Satb1, EG628919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316O22.bB6Ng01-316O22.g
ACCGA107205GA107206
length1,1791,203
definitionB6Ng01-316O22.b B6Ng01-316O22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattagtagtattccagtttgaaacaacaggaagtcctaggggat
tttccaagtgagcaggcagactagacttggtggagtcatgtggaagcccc
tcaaaggcctacagagtggctccagccgctcccctccttgaaccccgggt
atttgcaaacactaattaaaaatctgtcattacataatgttgcatcttac
atattctttgtgttgtgatgaaaatctatgtgaaattccatggattgcat
tccatggatttttattagattattgacaataagtaggctttcaccattat
aatatacactaaaaataagcatatctttgtttatgccttcagtcagtcct
gaaagctgagtcacttttatcctgagcacctgaagagaagcgatgaaacc
tcatagaaatgattgctctgtatgttataaggagagggctccccaattga
gaaacagtcatcataatggtaatcatttttcctcaaaaaactgaaaaaga
tattaagatatgtaaattaattctgttctgattaataagtaaaaactttt
aaaaacctaaaaactgatgtgatttttgttcattgtcttacgagtaagga
aaatgtggatgtgtaggtagaaagtcttgttctgagtagactatgaaggt
ttctatacatgtgtccttgggaagcctctctaaaaatctctgcaaccgtc
atagtgacgtgatggcatgagtccctgagccaaggaggggcgtagctctc
atgctgccctcgccatgctgctccatagagggatattcagccttttgctg
cctttcaattccaattccaatcccattccttgtgttacaaaaggatattg
aagtgggctagtgagggcctcagttagttgtttttcttcaaactccttgc
cagcttcttgagttgctgtaagaatgctctattcacttattattccttta
ttgtagggacattaaactattagtgtagaaatggcataacccaatgtttc
tttcttttcttcataatccacccacattaaagtacatactctggtgctct
ggtggtgtgttgtggtggtgtacagagaaacgttgcggtttctgaggttg
tggggtcattttttacctgatatctaaagcgttgtttaaagattcaaatc
cataactctcatatccaaaagggaatgtc
gaattcctatgggagaatgagtagaaggcaaaataactaaagtacagtca
agccttggatccaaacaacccacatgagcatcctgtaatctcttttctac
cagagccagttcttgctcggcctcaactgataatttttttgactatttaa
gttcttatcaccttgtaaggtttgaagtaagttacttagcttttgagaag
ttaaaacaattgtaggccatagctagttaacatcttctggcaattttttt
gaaaatctttaagagtttgtaattgatctttcctgatttgtgctttctgt
ggttgaattttctgtagatctatcttatatcttagataattaacagaatc
tcctttttggatttttttttttcagaagcaattttgcaaaaaaaaaaaaa
aaaaatcagtaaaggcttcttttgggccttgtataattttagtaaatgac
tctgacccctttcctgattcttcaaccttatcctaagcatttaaagctgg
aaaataatctcgcaccaaggtgtgatcatcaaattcaagctgcctttgta
gtgcagcatattgacctttgactagcaactgaccttgagaaatattaaca
tctttagccctaagttgctgttctatggccctagcttctctttttaccat
gtttgccattgtagctaaggactggctttcaatattgccattgtcaaatc
tttccagtcttagggcataattttgttctgagtttcccatgaaattaata
tttgcttcacatagggtaaatgcataccatatgaaataatttcttccttg
aatctcctcaaatctaaaatctcaataggattccatttaactttattcat
aacctttgaggtgcctatcatctaatgatagttcttgtatagtagctgga
taaataatgttgggttttctaacaatcttggatcacccctctttagtaag
tttttcttttttttcatgtataagttctttaagacgtttatcttaatcaa
tccacttttcatatttacatacaccacaaagaaaaccacttatggtataa
agataaatattgaattacagaactgatagccattataactgatttttgtc
caatctcactaattatttatggtttccatttcctgcacaggttcagtcca
tctaagccacgcactcactaatacgagggtcatatatgccctctcctaca
tag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_50978272_50979407
seq2: B6Ng01-316O22.b_48_1226 (reverse)

seq1  GACATTCC--TTTTGTTAT--GAGTTATG--TTTTAAT-TTTTAACA--C  41
      ||||||||  ||| | |||  ||||||||  ||| ||| ||| ||||   
seq2  GACATTCCCTTTTGGATATGAGAGTTATGGATTTGAATCTTTAAACAACG  50

seq1  CTTTAGATATCAG---TAAAATGA-CCCACA--CTCAG-AACGGCACCTT  84
      |||||||||||||    ||||||| ||||||  ||||| ||| ||| | |
seq2  CTTTAGATATCAGGTAAAAAATGACCCCACAACCTCAGAAACCGCAACGT  100

seq1  TTCTCTGTACA----CAC-ACACACACACAGA-CA-CAGAGTATGTACTT  127
      |||||||||||    ||| ||||||   |||| || ||||||||||||||
seq2  TTCTCTGTACACCACCACAACACACCACCAGAGCACCAGAGTATGTACTT  150

seq1  TAATGT-GGTGGATTATGA--GAAAGAA--GAACATT-GGTTATGC--AT  169
      |||||| ||||||||||||   ||||||   |||||| ||||||||   |
seq2  TAATGTGGGTGGATTATGAAGAAAAGAAAGAAACATTGGGTTATGCCATT  200

seq1  TCTACACTAATAGTTTAATGT-CCTACAATAA--GGATAATAAGTGAATA  216
      ||||||||||||||||||||| ||||||||||  | ||||||||||||||
seq2  TCTACACTAATAGTTTAATGTCCCTACAATAAAGGAATAATAAGTGAATA  250

seq1  GAGCATTCTTACAGC-ACTCA--GAGCTGGCAAGGAGTTTTGAAG-AAAA  262
      ||||||||||||||| |||||   ||||||||||||| ||||||| ||||
seq2  GAGCATTCTTACAGCAACTCAAGAAGCTGGCAAGGAG-TTTGAAGAAAAA  299

seq1  CAACTAACTGAGG-CCTCACTAG-CCAC-TCAATATCC-TTTGTAACACA  308
      ||||||||||||| ||||||||| |||| ||||||||| |||||||||||
seq2  CAACTAACTGAGGCCCTCACTAGCCCACTTCAATATCCTTTTGTAACACA  349

seq1  AGGAAT-GGATTGGAATTGGAATTG-AAGGCAGCAAAAGGCTGAATATCC  356
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGAATGGGATTGGAATTGGAATTGAAAGGCAGCAAAAGGCTGAATATCC  399

seq1  CTCTATGGAGCAGCATGGCGAGGGCAGCATGAGAGCTACGCCCCTCCTTG  406
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGGAGCAGCATGGCGAGGGCAGCATGAGAGCTACGCCCCTCCTTG  449

seq1  GCTCAGGGACTCATGCCATCACGTCACTATGACGGTTGCAGAGATTTTTA  456
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGGACTCATGCCATCACGTCACTATGACGGTTGCAGAGATTTTTA  499

seq1  GAGAGGCTTCCCAAGGACACATGTATAGAAACCTTCATAGTCTACTCAGA  506
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCTTCCCAAGGACACATGTATAGAAACCTTCATAGTCTACTCAGA  549

seq1  ACAAGACTTTCTACCTACACATCCACATTTTCCTTACTCGTAAGACAATG  556
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACTTTCTACCTACACATCCACATTTTCCTTACTCGTAAGACAATG  599

seq1  AACAAAAATCACATCAGTTTTTAGGTTTTTAAAAGTTTTTACTTATTAAT  606
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAATCACATCAGTTTTTAGGTTTTTAAAAGTTTTTACTTATTAAT  649

seq1  CAGAACAGAATTAATTTACATATCTTAATATCTTTTTCAGTTTTTTGAGG  656
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGAATTAATTTACATATCTTAATATCTTTTTCAGTTTTTTGAGG  699

seq1  AAAAATGATTACCATTATGATGACTGTTTCTCAATTGGGGAGCCCTCTCC  706
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGATTACCATTATGATGACTGTTTCTCAATTGGGGAGCCCTCTCC  749

seq1  TTATAACATACAGAGCAATCATTTCTATGAGGTTTCATCGCTTCTCTTCA  756
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACATACAGAGCAATCATTTCTATGAGGTTTCATCGCTTCTCTTCA  799

seq1  GGTGCTCAGGATAAAAGTGACTCAGCTTTCAGGACTGACTGAAGGCATAA  806
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCAGGATAAAAGTGACTCAGCTTTCAGGACTGACTGAAGGCATAA  849

seq1  ACAAAGATATGCTTATTTTTAGTGTATATTATAATGGTGAAAGCCTACTT  856
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATATGCTTATTTTTAGTGTATATTATAATGGTGAAAGCCTACTT  899

seq1  ATTGTCAATAATCTAATAAAAATCCATGGAATGCAATCCATGGAATTTCA  906
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAATAATCTAATAAAAATCCATGGAATGCAATCCATGGAATTTCA  949

seq1  CATAGATTTTCATCACAACACAAAGAATATGTAAGATGCAACATTATGTA  956
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATTTTCATCACAACACAAAGAATATGTAAGATGCAACATTATGTA  999

seq1  ATGACAGATTTTTAATTAGTGTTTGCAAATACCCGGGGTTCAAGGAGGGG  1006
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGATTTTTAATTAGTGTTTGCAAATACCCGGGGTTCAAGGAGGGG  1049

seq1  AGCGGCTGGAGCCACTCTGTAGGCCTTTGAGGGGCTTCCACATGACTCCA  1056
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCTGGAGCCACTCTGTAGGCCTTTGAGGGGCTTCCACATGACTCCA  1099

seq1  CCAAGTCTAGTCTGCCTGCTCACTTGGAAAATCCCCTAGGACTTCCTGTT  1106
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCTAGTCTGCCTGCTCACTTGGAAAATCCCCTAGGACTTCCTGTT  1149

seq1  GTTTCAAACTGGAATACTACTAATGAATTC  1136
      ||||||||||||||||||||||||||||||
seq2  GTTTCAAACTGGAATACTACTAATGAATTC  1179