BAC Information

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BAC

Clone NameB6Ng01-317H24
Chromosome17 (Build37)
Map Location 42,433,569 - 42,434,668
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627577
Downstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317H24.bB6Ng01-317H24.g
ACCGA107629GA107630
length8441,078
definitionB6Ng01-317H24.b B6Ng01-317H24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctaactgtggaaagaagtgagtctctgattcttgtgccttcttt
ttttttttttttcttactcttttttctttttattagataatttctttatt
tacatttcaaaggttatccccattgctagtttcccctctgaaaaccccct
atccccctctccccctgctcaccaacccacccactcccattcctggccct
gacattcccctatactggggcatagaaccttcacaggaccaagggcctct
cctcccattgatgacctactaggccattctctgctacatatgcagttaga
gccatgagtcccaccacgtgttttctttggttggtggtttagtaccaggg
agctctgggggtactggtaagttcatagtgttgtttctcctatgggactg
caaacccattaagcgctttgggtactttctctacctctttcattgggaac
tctgtgctttgtccagtggataactgtgaatatccacttctgtatttgcc
agggactggagagcctctcaggagacagctatatcaggctcctgtcagca
agctcttgttggcatctgccatagtgtctgggtttgggggctgtatatgg
gatggatccccaaaagaggcaggctcaggatgatcattgcttcagtttct
gcttcacacattgtctctgtaactccttcgatgggtattttgttcccact
tctaagaaggatcaaagtatccacactttggtcttccttcttcttgagat
tcatgtgtattgtaaattgtattgtgggtattctgagcttctgggctaat
atgcacttatcagtgagggcatatcatgtgtgttctattatgat

gaattccatgatcgaaagcccatctttaggacattggaatatgatgtagg
tttaattagaggacaagaggaatgtataattaaccagtcttagtgaaatt
gtggtccaactcattggccagatggaatcctccaaaatggtatatggttc
tcctgcaggctaagtacattgtcaacctattaatgacatcattatcttag
gtagtcatgaattattttttgagattgaatacatgtttggaggtaacatg
cagaagtaagtttgtatattgacatgccaataatttttattacgtaaagg
tagaataaggttggaaccttttatggcttgaataaaaaaaaatgtatcct
atttgttcatatatttgcatacttgatgtccagttggtggctttgtttgg
tgacactatggaaactacaggaggtggagccttgctgggggaagtatgtc
cttggtggctagtttgaggatgtataatctcaagccactttctattatcc
ctctctgcctttttttttttttttttttgtatagatgaaaatcagccagc
ttcctgctcctattgccatgccataccttccccaccacatggactcttcc
tctctggagccataaaccctttctttcttaagttgcttttggtcatgggg
tttattacagtaacagaaaagttcgtaatacaaatgctgtttagttttaa
ggcatggaagaaataaaggcatgagttctttaaaaataatctgataactg
ttcctctaatttaaaataccaaatccagtctcatcatatatacctcttcc
tattattatctgtcagttttcaagataaaataattttggagaagatggaa
gctggccatgaagagactgccagtccctgactctgcatgatgggggagct
caccacaggagcttgcatctattctgaagaaaaagagagagcagcactga
tgttgaatgcataatacatctcatagtaggggtattttcaaacactgagt
ctataaccatagaagagggtctgtgcctacaatatttacccaattatgac
tgatatgatatatgctatatatcaatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_42433569_42434668
seq2: B6Ng01-317H24.g_67_1144 (reverse)

seq1  GTATATGATATAATAGCATATATCATTATACAGTCATTAAATTTGTGGTA  50
      |||| |||||| ||||||||||||| ||| |||||||  |||   |||  
seq2  GTAT-TGATAT-ATAGCATATATCA-TAT-CAGTCAT--AAT---TGGGT  41

seq1  AAATATTGTAGGCACAAGACACTCTTCTATGGTTTATAAGGACTCAAGTG  100
      ||||||||||||||| |||| ||||||||||| |||||  ||||| ||||
seq2  AAATATTGTAGGCAC-AGACCCTCTTCTATGG-TTATA--GACTC-AGTG  86

seq1  TTTGAAAATACCCCTAACCTATGAGATGGTTAATTAATTGCATTTCAACA  150
      ||||||||||||||||  ||||||||||    ||||  |||| |||||||
seq2  TTTGAAAATACCCCTA--CTATGAGATG---TATTA--TGCA-TTCAACA  128

seq1  TCAGTGCTGCTCTCTCTTTTTCTTCAGAATAGATGCAAAGCTCCTGTGGT  200
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCAGTGCTGCTCTCTCTTTTTCTTCAGAATAGATGC-AAGCTCCTGTGGT  177

seq1  GAGCT-CCCCATCATGCAGAGTCAGGGACTGGCAGTCTCTTCATGGCCAG  249
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCCCCATCATGCAGAGTCAGGGACTGGCAGTCTCTTCATGGCCAG  227

seq1  CTTCCATCTTCTCCAAAATTATTTTATCCTGAAAACTGACAGATAATAAT  299
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTCCATCTTCTCCAAAATTATTTTATCTTGAAAACTGACAGATAATAAT  277

seq1  AGGAAGAGGTATATATGATGAGACTGGATTTGGTATTTTAAATTAGAGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGGTATATATGATGAGACTGGATTTGGTATTTTAAATTAGAGGA  327

seq1  ACAGTTATCAGATTATTTTTAAAGAACTCATGCCTTTATTTCTTCCATGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTATCAGATTATTTTTAAAGAACTCATGCCTTTATTTCTTCCATGC  377

seq1  CTTAAAACTAAACAGCATTTGTATTACGAACTTTTCTGTTACTGTAATAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAACTAAACAGCATTTGTATTACGAACTTTTCTGTTACTGTAATAA  427

seq1  ACCCCATGACCAAAAGCAACTTAAGAAAGAAAGGGTTTATGGCTCCAGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATGACCAAAAGCAACTTAAGAAAGAAAGGGTTTATGGCTCCAGAG  477

seq1  AGGAAGAGTCCATGTGGTGGGGAAGGTATGGCATGGCAATAGGAGCAGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGTCCATGTGGTGGGGAAGGTATGGCATGGCAATAGGAGCAGGA  527

seq1  AGCTGGCTGATTTTCATCTATACAAAAAAAAAAAAAAAAAAAGGCAGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCTGATTTTCATCTATACAAAAAAAAAAAAAAAAAAAGGCAGAGA  577

seq1  GGGATAATAGAAAGTGGCTTGAGATTATACATCCTCAAACTAGCCACCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAATAGAAAGTGGCTTGAGATTATACATCCTCAAACTAGCCACCAA  627

seq1  GGACATACTTCCCCCAGCAAGGCTCCACCTCCTGTAGTTTCCATAGTGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATACTTCCCCCAGCAAGGCTCCACCTCCTGTAGTTTCCATAGTGTC  677

seq1  ACCAAACAAAGCCACCAACTGGACATCAAGTATGCAAATATATGAACAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACAAAGCCACCAACTGGACATCAAGTATGCAAATATATGAACAAA  727

seq1  TAGGATACATTTTTTTTTATTCAAGCCATAAAAGGTTCCAACCTTATTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATACATTTTTTTTTATTCAAGCCATAAAAGGTTCCAACCTTATTCT  777

seq1  ACCTTTACGTAATAAAAATTATTGGCATGTCAATATACAAACTTACTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTACGTAATAAAAATTATTGGCATGTCAATATACAAACTTACTTCT  827

seq1  GCATGTTACCTCCAAACATGTATTCAATCTCAAAAAATAATTCATGACTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTACCTCCAAACATGTATTCAATCTCAAAAAATAATTCATGACTA  877

seq1  CCTAAGATAATGATGTCATTAATAGGTTGACAATGTACTTAGCCTGCAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGATAATGATGTCATTAATAGGTTGACAATGTACTTAGCCTGCAGG  927

seq1  AGAACCATATACCATTTTGGAGGATTCCATCTGGCCAATGAGTTGGACCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCATATACCATTTTGGAGGATTCCATCTGGCCAATGAGTTGGACCA  977

seq1  CAATTTCACTAAGACTGGTTAATTATACATTCCTCTTGTCCTCTAATTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCACTAAGACTGGTTAATTATACATTCCTCTTGTCCTCTAATTAA  1027

seq1  ACCTACATCATATTCCAATGTCCTAAAGATGGGCTTTCGATCATGGAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACATCATATTCCAATGTCCTAAAGATGGGCTTTCGATCATGGAATT  1077

seq1  C  1100
      |
seq2  C  1078


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