BAC Information

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BAC

Clone NameB6Ng01-318A02
Chromosome17 (Build37)
Map Location 17,480,743 - 17,630,408
singlet/doubletdoublet
Overlap geneLOC100041965, Riok2, Lix1
Upstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854
Downstream geneLOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318A02.bB6Ng01-318A02.g
ACCGA108002GA108003
length712979
definitionB6Ng01-318A02.b B6Ng01-318A02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,480,743 - 17,481,452)(17,629,442 - 17,630,408)
sequence
gaattctccttcgcctaggacgtgtcactccctgattggctgcagcccat
cggccaagttgacgtcacggggaaggcagagcacatggagtggagaacca
ccctcggcacatgcgcagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacggcgaatgtgggcgcggctcccaacagaaaacaa
tgaggcattgtggggaacttaacaaatacactatatgtgaataatctgca
aggaattaatcacaacattcactagaaataagttatgtaaatggaacagc
tttgagtatgtaactcaaagaaccagctcctgattttggtgattctttgt
atagttcttttttgttgttgttttgttttgtttttcgagacagggtttct
ctgtatagccctggctgtcctggaactcactctgtacaccaggctggcct
ggaactcagaaatcctcctgcctctgcctcccaattgctgggattaaagg
catgggccaccactgcccagcattctttttgttttcaattggttgatttc
agccctgagtttgattatttcctgccatctactcctcttgggtgtatttg
cttctttttgttctagagctttcaggtgtgctgtcaagctgctagtgtat
gctctctccagtttctttttgaaggcactcagagcaacatgtttatccct
cttaggactgct
gaattcaaaccagaggtggctgctgatttcacgccagcctgaaagcaaaa
gaaaggcagagaccagagtcctcggtatacttttaagaacatgtccccaa
taacctaacttcctttcaagagatcccttctcctaaatggtcctctccct
tccaggcacatggcctttgggggaatttaaccaaaccacaagctggtggg
aagaaagagagcgagaagacagagaacagagaagcaaacaaataagttta
aaaccaagtgctgagaccaacatttacaaaggattatgaagtactatatg
tatccaaaataagtagttattatttgtcaagctgcctgaggatcttgaat
tgttttgcatatgaggaattgaattggttcttaaatgctggcataaatgg
cttcagctgggagtcagttgtgtagactaaggataggctaacgttagact
gagacaggagccacgctatttaagaggtatctacaggcaatccttggttc
agagctcctccggatctttctgttgagtgcttgaaattcctgcccctaca
aataattcttcaaaatgatggtcacattgtccctttaaggaaatgttcta
caaatacatataaactcttttaactggagagaaagcgtttgtggactagt
actaactaccttagcacattagttcattactactttttaaagcagacctc
cgggggaaacttttatttttaatcaggctccaaaagagaagtgcacagaa
tgatggttctgaggattccttttagaaatctcttttacttatacacactt
cccagtccttgcaacacacattagttataaagtggtgttgtgtaacttta
ttcactttaataagaattttactattttttaatcacatcctttcctccac
catcctctgggatgtcccaggtccttttgcttcaacaccattcatgttaa
tttggttttgggagataatttaataaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_17480743_17481452
seq2: B6Ng01-318A02.b_48_759

seq1  GAATTCTCCTTCGCCTAGGACGTGTCACTCCCTGATTGGCTGCAGCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTCGCCTAGGACGTGTCACTCCCTGATTGGCTGCAGCCCAT  50

seq1  CGGCCAAGTTGACGTCACGGGGAAGGCAGAGCACATGGAGTGGAGAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCAAGTTGACGTCACGGGGAAGGCAGAGCACATGGAGTGGAGAACCA  100

seq1  CCCTCGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTC  150

seq1  AGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACAGAAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACAGAAAACAA  200

seq1  TGAGGCATTGTGGGGAACTTAACAAATACACTATATGTGAATAATCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCATTGTGGGGAACTTAACAAATACACTATATGTGAATAATCTGCA  250

seq1  AGGAATTAATCACAACATTCACTAGAAATAAGTTATGTAAATGGAACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTAATCACAACATTCACTAGAAATAAGTTATGTAAATGGAACAGC  300

seq1  TTTGAGTATGTAACTCAAAGAACCAGCTCCTGATTTTGGTGATTCTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTATGTAACTCAAAGAACCAGCTCCTGATTTTGGTGATTCTTTGT  350

seq1  ATAGTTCTTTTTTGTTGTTGTTTTGTTTTGTTTTTCGAGACAGGGTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTTTTTTGTTGTTGTTTTGTTTTGTTTTTCGAGACAGGGTTTCT  400

seq1  CTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTACACCAGGCTGGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTACACCAGGCTGGCCT  450

seq1  GGAACTCAGAAATCCTCCTGCCTCTGCCTCCCAATTGCTGGGATTAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCAGAAATCCTCCTGCCTCTGCCTCCCAATTGCTGGGATTAAAGG  500

seq1  CATGGGCCACCACTGCCCAGCATTCTTTTTGTTTTCAATTGGTTGATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCCACCACTGCCCAGCATTCTTTTTGTTTTCAATTGGTTGATTTC  550

seq1  AGCCCTGAGTTTGATTATTTCCTGCCATCTACTCCTCTTGGGTGTATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGAGTTTGATTATTTCCTGCCATCTACTCCTCTTGGGTGTATTTG  600

seq1  CTTCTTTTTGTTCTAGAGCTTTCAGGTGTGCTGTCAAGCTGCTAGTGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTTGTTCTAGAGCTTTCAGGTGTGCTGTCAAGCTGCTAGTGTAT  650

seq1  GCTCTCTCCAGTTTCTTTTTGAAGGCACTCAGAGCTACATGTT--TTCCT  698
      ||||||||||||||||||||||||||||||||||| |||||||  | |||
seq2  GCTCTCTCCAGTTTCTTTTTGAAGGCACTCAGAGCAACATGTTTATCCCT  700

seq1  CTTAGGACTGCT  710
      ||||||||||||
seq2  CTTAGGACTGCT  712

seq1: chr17_17629442_17630408
seq2: B6Ng01-318A02.g_70_1048 (reverse)

seq1  GATTTATTAA--TTTCTCCC-AAACCAAATTAACATGAAT-GTGTTGAAG  46
      ||||||||||  | |||||| ||||||||||||||||||| |||||||||
seq2  GATTTATTAAATTATCTCCCAAAACCAAATTAACATGAATGGTGTTGAAG  50

seq1  C-AAAGGA-CTTGGACAT-CCAGAGGATGGTGGAGG-AAGGATGTGATT-  91
      | |||||| || |||||| ||||||||||||||||| |||||||||||| 
seq2  CAAAAGGACCTGGGACATCCCAGAGGATGGTGGAGGAAAGGATGTGATTA  100

seq1  AAAAATAGTAAATTTCTTATT-AAGTGAAT-AAGTTACACAACACCACTT  139
      |||||||||||| |||||||| |||||||| |||||||||||||||||||
seq2  AAAAATAGTAAAATTCTTATTAAAGTGAATAAAGTTACACAACACCACTT  150

seq1  TATAACTAATGTGTGTTGCAAGGACTGGGAAGTGTGTATAAGTAAAAGAG  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTAATGTGTGTTGCAAGGACTGGGAAGTGTGTATAAGTAAAAGAG  200

seq1  ATTTCTAAAAGGAATCCTCAGAACCATCATTCTGTGCACTTCTCTTTTGG  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAAAAGGAATCCTCAGAACCATCATTCTGTGCACTTCTCTTTTGG  250

seq1  AGCCTGATTAAAAATAAAAGTTTCCCCCGGAGGTCTGCTTT-AAAAGTAG  288
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGCCTGATTAAAAATAAAAGTTTCCCCCGGAGGTCTGCTTTAAAAAGTAG  300

seq1  TAATGAACTAATGTGCTAAGGTAGTTAGTACTAGTCCACAAACGCTTTCT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAACTAATGTGCTAAGGTAGTTAGTACTAGTCCACAAACGCTTTCT  350

seq1  CTCCAGTTAAAAGAGTTTATATGTATTTGTAGAACATTTCCTTAAAGGGA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTTAAAAGAGTTTATATGTATTTGTAGAACATTTCCTTAAAGGGA  400

seq1  CAATGTGACCATCATTTTGAAGAATTATTTGTAGGGGCAGGAATTTCAAG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGACCATCATTTTGAAGAATTATTTGTAGGGGCAGGAATTTCAAG  450

seq1  CACTCAACAGAAAGATCCGGAGGAGCTCTGAACCAAGGATTGCCTGTAGA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAACAGAAAGATCCGGAGGAGCTCTGAACCAAGGATTGCCTGTAGA  500

seq1  TACCTCTTAAATAGCGTGGCTCCTGTCTCAGTCTAACGTTAGCCTATCCT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTTAAATAGCGTGGCTCCTGTCTCAGTCTAACGTTAGCCTATCCT  550

seq1  TAGTCTACACAACTGACTCCCAGCTGAAGCCATTTATGCCAGCATTTAAG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTACACAACTGACTCCCAGCTGAAGCCATTTATGCCAGCATTTAAG  600

seq1  AACCAATTCAATTCCTCATATGCAAAACAATTCAAGATCCTCAGGCAGCT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATTCAATTCCTCATATGCAAAACAATTCAAGATCCTCAGGCAGCT  650

seq1  TGACAAATAATAACTACTTATTTTGGATACATATAGTACTTCATAATCCT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATAATAACTACTTATTTTGGATACATATAGTACTTCATAATCCT  700

seq1  TTGTAAATGTTGGTCTCAGCACTTGGTTTTAAACTTATTTGTTTGCTTCT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATGTTGGTCTCAGCACTTGGTTTTAAACTTATTTGTTTGCTTCT  750

seq1  CTGTTCTCTGTCTTCTCGCTCTCTTTCTTCCCACCAGCTTGTGGTTTGGT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCTGTCTTCTCGCTCTCTTTCTTCCCACCAGCTTGTGGTTTGGT  800

seq1  TAAATTCCCCCAAAGGCCATGTGCCTGGAAGGGAGAGGACCATTTAGGAG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCCCCCAAAGGCCATGTGCCTGGAAGGGAGAGGACCATTTAGGAG  850

seq1  AAGGGATCTCTTGAAAGGAAGTTAGGTTATTGGGGACATGTTCTTAAAAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATCTCTTGAAAGGAAGTTAGGTTATTGGGGACATGTTCTTAAAAG  900

seq1  TATACCGAGGACTCTGGTCTCTGCCTTTCTTTTGCTTTCAGGCTGGCGTG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCGAGGACTCTGGTCTCTGCCTTTCTTTTGCTTTCAGGCTGGCGTG  950

seq1  AAATCAGCAGCCACCTCTGGTTTGAATTC  967
      |||||||||||||||||||||||||||||
seq2  AAATCAGCAGCCACCTCTGGTTTGAATTC  979