BAC Information

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BAC

Clone NameB6Ng01-319J07
Chromosome17 (Build37)
Map Location 46,979,582 - 47,139,243
singlet/doubletdoublet
Overlap geneBC032203, A330017A19Rik, Tbcc, Prph2, Ubr2
Upstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1
Downstream geneLOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319J07.bB6Ng01-319J07.g
ACCGA109173GA109174
length876940
definitionB6Ng01-319J07.b B6Ng01-319J07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,138,378 - 47,139,243)(46,979,582 - 46,980,513)
sequence
gaattcaactcaggacctctggaagagcagtcagtgctcttaaccactga
gccatctctccagccctcttttttggttttttaagacagggtttcctgtg
tagccttggctgtcctgcaactcactctgtagaccaggctggcctcaaaa
tcagatccacctgcctctgcttctcaagttcttggactaaagttgtgcac
caccactgcccagcaaatagtcttttagcaagactgattgcaacctaagt
aaatgctgggtctgagagttgtgttagcagttcaggtaacggtgttttag
tagagtgggtcatttaatctcacgttttgaggttcataatccttttcctg
gcttagaggcaacatgacagacacaaagacatttaagagaacaatgaaca
catgggcggagggcaggcatgcgggacaggaggcagggaaaggagtgggt
ttagagttagagtcttacctgacccgctgcaggcctaagcccccccacac
acactttctttctgtgtataagtacaatgggattgtagacctatttgcag
tcattcactggtgctcagtgttttaaacctgacaagaggggaaaggagtt
gggaaatggacctagaatacaccttgcaagaggccaagcaaatgcacttg
gagaggatgggtaagggattgtgtagtaaagagatgagaggatgcctgcc
tgattggcggaacagagcccttagatgctaagcagagcagaaagagggga
tcttcactgacttggatggcggtgggaagatcgcaggctcagtttcagag
cattttgacttagtgagataccaaggtatgtaacaacttggaaagcaaag
tttgaggccacataaaaagggaggtg
gaattcaaatctctggaagctatgtaagacagaaacaaaagcaggcacag
gcagacagacagacagacaggagtttgttggccagccagcctagccaaaa
tggtgagcttcaagtttcactgagagcctgcctcaaaaaaataagacgga
gagtaagaggaatacacctgacagcatcctctgatctctgcacacgccca
cacactatacgcacagacacacaaaattaattaggggctggagggcaaag
agcaccagctccagcagaggaccctgattcaatccacggctcccacccat
ctgcaacttcagtcccaggggcttgaggctcccctttgaactctgtgggt
gctgtatgtgcatgggtcacagaaatatatgcaagcaaaacatccatcta
cataaaatggaaaaaattaaaaatgaattaaaagattgaattctagcact
tgggaagatgagaagttggagggcagtctaggctggaccccagccttgga
agggggaaggctgggaatggggcagctgtccacagcagtgcttgctgtgg
ctaagggaggcttagggaggctgtgcacactcttcaagcccactgctctc
tgtcaatgagtaacacgtaaaatattttgggtttgcagcatgttccaagg
aaaacagccctatgaaaacaaccaacaatgttaacagacaaaggagttgc
caggactccccttccttaagggcactcaaggacaatgtgtgacagcaaaa
actttttttttttttttttttggtttttcgagacagggtttttctgtata
gtcttggctgccctggaaatcactttgtagaccaggcttggcctcgtaat
tcagaaattccgacttgcctctgccttccaagtgctgggattaaaggcgt
gtgccacaatacccgcttttttttttttgttatttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_47138378_47139243
seq2: B6Ng01-319J07.b_48_923 (reverse)

seq1  CACCTCCC-TTTTCTGT-GCCTCAACTTTTGCTT--CCAGCTCTTATATA  46
      |||||||| |||| ||| |||||||  |||||||  | || | ||| |||
seq2  CACCTCCCTTTTTATGTGGCCTCAAACTTTGCTTTCCAAGTTGTTACATA  50

seq1  ACTGGGTATCTCACTAAGTCAAAATGC-CTGAAACTGAGCTTGCGATCTT  95
       || ||||||||||||||||||||||| |||||||||||| |||||||||
seq2  CCTTGGTATCTCACTAAGTCAAAATGCTCTGAAACTGAGCCTGCGATCTT  100

seq1  -CCACCGCCATCCAAGTCTGTGAAGAT-CCCTC-TTCTGCTCTGCTTAGC  142
       ||||||||||||||||| |||||||| ||||| ||||||||||||||||
seq2  CCCACCGCCATCCAAGTCAGTGAAGATCCCCTCTTTCTGCTCTGCTTAGC  150

seq1  ATCTAA-GGCTCTGTTCCGCC-ATCAGGCAGGCATCCTCTCATCTCTTTA  190
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  ATCTAAGGGCTCTGTTCCGCCAATCAGGCAGGCATCCTCTCATCTCTTTA  200

seq1  CTACACAATCCCTTACCCATCCTCTCCAAGTGCATTTGCTTGGCCTCTTG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAATCCCTTACCCATCCTCTCCAAGTGCATTTGCTTGGCCTCTTG  250

seq1  CAAGGTGTATTCTAGGTCCATTTCCCAACTCCTTTCCCCTCTTGTCAGGT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGTATTCTAGGTCCATTTCCCAACTCCTTTCCCCTCTTGTCAGGT  300

seq1  TTAAAACACTGAGCACCAGTGAATGACTGCAAATAGGTCTACAATCCCAT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACACTGAGCACCAGTGAATGACTGCAAATAGGTCTACAATCCCAT  350

seq1  TGTACTTATACACAGAAAGAAAGTGTGTGTGGGGGGGCTTAGGCCTGCAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTATACACAGAAAGAAAGTGTGTGTGGGGGGGCTTAGGCCTGCAG  400

seq1  CGGGTCAGGTAAGACTCTAACTCTAAACCCACTCCTTTCCCTGCCTCCTG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTCAGGTAAGACTCTAACTCTAAACCCACTCCTTTCCCTGCCTCCTG  450

seq1  TCCCGCATGCCTGCCCTCCGCCCATGTGTTCATTGTTCTCTTAAATGTCT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCATGCCTGCCCTCCGCCCATGTGTTCATTGTTCTCTTAAATGTCT  500

seq1  TTGTGTCTGTCATGTTGCCTCTAAGCCAGGAAAAGGATTATGAACCTCAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTGTCATGTTGCCTCTAAGCCAGGAAAAGGATTATGAACCTCAA  550

seq1  AACGTGAGATTAAATGACCCACTCTACTAAAACACCGTTACCTGAACTGC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGAGATTAAATGACCCACTCTACTAAAACACCGTTACCTGAACTGC  600

seq1  TAACACAACTCTCAGACCCAGCATTTACTTAGGTTGCAATCAGTCTTGCT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACAACTCTCAGACCCAGCATTTACTTAGGTTGCAATCAGTCTTGCT  650

seq1  AAAAGACTATTTGCTGGGCAGTGGTGGTGCACAACTTTAGTCCAAGAACT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTATTTGCTGGGCAGTGGTGGTGCACAACTTTAGTCCAAGAACT  700

seq1  TGAGAAGCAGAGGCAGGTGGATCTGATTTTGAGGCCAGCCTGGTCTACAG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGCAGAGGCAGGTGGATCTGATTTTGAGGCCAGCCTGGTCTACAG  750

seq1  AGTGAGTTGCAGGACAGCCAAGGCTACACAGGAAACCCTGTCTTAAAAAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTGCAGGACAGCCAAGGCTACACAGGAAACCCTGTCTTAAAAAA  800

seq1  CCAAAAAAGAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAGAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGC  850

seq1  TCTTCCAGAGGTCCTGAGTTGAATTC  866
      ||||||||||||||||||||||||||
seq2  TCTTCCAGAGGTCCTGAGTTGAATTC  876

seq1: chr17_46979582_46980513
seq2: B6Ng01-319J07.g_69_1008

seq1  GAATTCAAATCTCTGGAAGCTATGTAAGACAGAAACAAAAGCAGGCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCTCTGGAAGCTATGTAAGACAGAAACAAAAGCAGGCACAG  50

seq1  GCAGACAGACAGACAGACAGGAGTTTGTTGGCCAGCCAGCCTAGCCAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGACAGACAGACAGGAGTTTGTTGGCCAGCCAGCCTAGCCAAAA  100

seq1  TGGTGAGCTTCAAGTTTCACTGAGAGCCTGCCTCAAAAAAATAAGACGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGCTTCAAGTTTCACTGAGAGCCTGCCTCAAAAAAATAAGACGGA  150

seq1  GAGTAAGAGGAATACACCTGACAGCATCCTCTGATCTCTGCACACGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGAGGAATACACCTGACAGCATCCTCTGATCTCTGCACACGCCCA  200

seq1  CACACTATACGCACAGACACACAAAATTAATTAGGGGCTGGAGGGCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTATACGCACAGACACACAAAATTAATTAGGGGCTGGAGGGCAAAG  250

seq1  AGCACCAGCTCCAGCAGAGGACCCTGATTCAATCCACGGCTCCCACCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAGCTCCAGCAGAGGACCCTGATTCAATCCACGGCTCCCACCCAT  300

seq1  CTGCAACTTCAGTCCCAGGGGCTTGAGGCTCCCCTTTGAACTCTGTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACTTCAGTCCCAGGGGCTTGAGGCTCCCCTTTGAACTCTGTGGGT  350

seq1  GCTGTATGTGCATGGGTCACAGAAATATATGCAAGCAAAACATCCATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATGTGCATGGGTCACAGAAATATATGCAAGCAAAACATCCATCTA  400

seq1  CATAAAATGGAAAAAATTAAAAATGAATTAAAAGATTGAATTCTAGCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATGGAAAAAATTAAAAATGAATTAAAAGATTGAATTCTAGCACT  450

seq1  TGGGAAGATGAGAAGTTGGAGGGCAGTCTAGGCTGGACCCCAGCCTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGATGAGAAGTTGGAGGGCAGTCTAGGCTGGACCCCAGCCTTGGA  500

seq1  AGGGGGAAGGCTGGGAATGGGGCAGCTGTCCACAGCAGTGCTTGCTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAAGGCTGGGAATGGGGCAGCTGTCCACAGCAGTGCTTGCTGTGG  550

seq1  CTAAGGGAGGCTTAGGGAGGCTGTGCACACTCTTCAAGCCCACTGCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGAGGCTTAGGGAGGCTGTGCACACTCTTCAAGCCCACTGCTCTC  600

seq1  TGTCAATGAGTAACACGTAAAATATTTTGGGTTTGCAGCATGTTCCAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATGAGTAACACGTAAAATATTTTGGGTTTGCAGCATGTTCCAAGG  650

seq1  AAAACAGCCCTATGAAAACAACCAACAATGTTAACAGACAAAGGAGTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCCCTATGAAAACAACCAACAATGTTAACAGACAAAGGAGTTGC  700

seq1  CAGGACTCCCCTTCCTTAAGGGCACTCAAGGACAATGTGTGACAGCAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTCCCCTTCCTTAAGGGCACTCAAGGACAATGTGTGACAGCAAAA  750

seq1  ACTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTTTCTGTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTTTCTGTATA  800

seq1  GTCTTGGCTGCCCTGGAACTCACTTTGTAGACCAGGC-TGGCCTCG-AAC  848
      |||||||||||||||||| |||||||||||||||||| |||||||| || 
seq2  GTCTTGGCTGCCCTGGAAATCACTTTGTAGACCAGGCTTGGCCTCGTAAT  850

seq1  TCAGAAA-TCCGAC-TGCCTCTGCCTTCCAAGTGCTGGGATTAAAGGCGT  896
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  TCAGAAATTCCGACTTGCCTCTGCCTTCCAAGTGCTGGGATTAAAGGCGT  900

seq1  GTGCCACAATACCCGCTTTTTTTTTTTT----TTTTTTTT  932
      ||||||||||||||||||||||||||||    ||||||||
seq2  GTGCCACAATACCCGCTTTTTTTTTTTTGTTATTTTTTTT  940