BAC Information

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BAC

Clone NameB6Ng01-320M18
Chromosome17 (Build37)13 (Build37)
Map Location 22,345,906 - 22,347,07166,192,918 - 66,193,077
singlet/doubletsingletsinglet
Overlap geneEG240038
Upstream geneV1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007
Downstream geneEG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320M18.bB6Ng01-320M18.g
ACCGA110073GA110074
length1,159955
definitionB6Ng01-320M18.b B6Ng01-320M18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(22,345,906 - 22,347,071)(66,192,918 - 66,193,077)
sequence
gaattcacataagtttcaactatcacaggcggttttgtatgaaataactt
cttcctgtacattcttgaactgataaatactcactgattggtaggtactt
aacagtaacagcatatcaaaacaaattacagacataacatgacacaaggg
tagcagttctctttcaaacacaggaacacttgactagaaggtttctgatt
tgtaaagattcaaagcaatgtgtttatgaacaaggtaaacccgactatag
gtagaattttgagaaagcacagaccattcaagaccttcaaaatattaaac
caagatttaaaaatcagaattattccagttgaaaccattaagaaacaaca
agagaaatcaatggtaagataagacacacagtttcccattctgtagattt
actaaacaatccttatcaaaattctgctatcgttgtatcagtaaaaggga
aactgaccacaaaaggaaatgattataaaggagctactgaagccttcaaa
gttaaaagatcaggaaagaaaccttgaggcaataatgcttaaatgaaggt
aattaaatttagatatttttgatatgtacaccaaaaaagtgatacaaatg
gaataaggatatcatcatacacatgcagtcaaaaaagtgtactttctgtt
agtagtaattattatacagaaagtcagtaatgtgtatagtaagtcagtaa
tgtgtgcaataggctagtcataagatgattcacagtagaatattccaaaa
ccatttctatataaacagaatggggcaaaaccaattacatgtcacatttg
atctcactgctttaaaaatgtttacaatatttttactctagcttataagt
aaaagtgttttgcaccatgtatgtatgagctctgtgtttgtacatgatgg
ctgatgaggttcaaagaaaggcatcagatctctcggaatggaatgcataa
ttgtttgcggacaataaggggatgctgagaactatacccatggctctatg
agatgaggaagtgctgttcacctactgagacatctctgcagtgctcctcc
catccatttccactgtcactgagctcccccactgaatctacacagtctca
aaatatccatgattccttgctacagtcttctctataccttatagagtctt
ggttctgct
gaattcatcagagcaattcatacaggagagaaaccatacaaatgtatcga
atgtgacaaatcttttacccagaaaggccatcttataattcatcagagaa
ttcatacaggagagaagccttataaatgcagtgaatgtgacaaatgcttt
acccaaaaatgtagtcttactattcatcagagaattcatacaggggaaaa
accgtataaatgtggcaaatgtgaaaaatgcttcactcacaaaggtgatc
ttagaagtcatcagagaattcatacaggagagaaaccttataaatgtagt
gaatgtgacaaatgctttacccacaaacgcagtcttagaagtcatcaaag
aattcatacaggagagaagccttacaaatgtagtgaatgtgacaaatgct
ttacccacaaacgcagtcttagtattcatcaaataattcatacagaagag
aagccttatagatgtagtggatgtgacaaaatctttaatcacaaaggtga
tcttagaaatcatcagagaattcatacaggacagaaaccttataaatgta
gtgaatgtgacaagtgctttgttcataaatacagtcttagtattcatcag
agaattcatacaggagagaaaccttataaatgtaatgaatgtaatgaatt
ctttagatataaatgtagtcttaggactcatcagaaaatgcacacattag
agcatatttacaaatgaaacaaatgacacaaacccttcaaaaaagatcat
gttaaaactcatcaaacaatatatacaggagagtgtcctttcaaatataa
atgtttaaatcctttactgttagctcatctctgacagtacatcagagaat
tcatacgggagagaaacctcacaaatgtaacatgaggaaagagctttacc
tgaaaagtagtttctgctgggaaaacatgtggcatgtattttacccaagt
ggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_22345906_22347071
seq2: B6Ng01-320M18.b_50_1208

seq1  GAATTCACATAAGTTTCAACTATCACAGGCGGTTTTGTATGAAATAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATAAGTTTCAACTATCACAGGCGGTTTTGTATGAAATAACTT  50

seq1  CTTCCTGTACATTCTTGAACTGATAAATACTCACTGATTGGTAGGTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTACATTCTTGAACTGATAAATACTCACTGATTGGTAGGTACTT  100

seq1  AACAGTAACAGCATATCAAAACAAATTACAGACATAACATGACACAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAACAGCATATCAAAACAAATTACAGACATAACATGACACAAGGG  150

seq1  TAGCAGTTCTCTTTCAAACACAGGAACACTTGACTAGAAGGTTTCTGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTTCTCTTTCAAACACAGGAACACTTGACTAGAAGGTTTCTGATT  200

seq1  TGTAAAGATTCAAAGCAATGTGTTTATGAACAAGGTAAACCCGACTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGATTCAAAGCAATGTGTTTATGAACAAGGTAAACCCGACTATAG  250

seq1  GTAGAATTTTGAGAAAGCACAGACCATTCAAGACCTTCAAAATATTAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATTTTGAGAAAGCACAGACCATTCAAGACCTTCAAAATATTAAAC  300

seq1  CAAGATTTAAAAATCAGAATTATTCCAGTTGAAACCATTAAGAAACAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTTAAAAATCAGAATTATTCCAGTTGAAACCATTAAGAAACAACA  350

seq1  AGAGAAATCAATGGTAAGATAAGACACACAGTTTCCCATTCTGTAGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATCAATGGTAAGATAAGACACACAGTTTCCCATTCTGTAGATTT  400

seq1  ACTAAACAATCCTTATCAAAATTCTGCTATCGTTGTATCAGTAAAAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACAATCCTTATCAAAATTCTGCTATCGTTGTATCAGTAAAAGGGA  450

seq1  AACTGACCACAAAAGGAAATGATTATAAAGGAGCTACTGAAGCCTTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACCACAAAAGGAAATGATTATAAAGGAGCTACTGAAGCCTTCAAA  500

seq1  GTTAAAAGATCAGGAAAGAAACCTTGAGGCAATAATGCTTAAATGAAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAGATCAGGAAAGAAACCTTGAGGCAATAATGCTTAAATGAAGGT  550

seq1  AATTAAATTTAGATATTTTTGATATGTACACCAAAAAAGTGATACAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATTTAGATATTTTTGATATGTACACCAAAAAAGTGATACAAATG  600

seq1  GAATAAGGATATCATCATACACATGCAGTCAAAAAAGTGTACTTTCTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGGATATCATCATACACATGCAGTCAAAAAAGTGTACTTTCTGTT  650

seq1  AGTAGTAATTATTATACAGAAAGTCAGTAATGTGTATAGTAAGTCAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAATTATTATACAGAAAGTCAGTAATGTGTATAGTAAGTCAGTAA  700

seq1  TGTGTGCAATAGGCTAGTCATAAGATGATTCACAGTAGAATATTCCAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCAATAGGCTAGTCATAAGATGATTCACAGTAGAATATTCCAAAA  750

seq1  CCATTTCTATATAAACAGAATGGGGCAAAACCAATTACATGTCACATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTATATAAACAGAATGGGGCAAAACCAATTACATGTCACATTTG  800

seq1  ATCTCACTGCTTTAAAAATGTTTACAATATTTTTACTCTAGCTTATAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACTGCTTTAAAAATGTTTACAATATTTTTACTCTAGCTTATAAGT  850

seq1  AAAAGTGTTTTGCACCATGTATGTATGAGCTCTGTGTTTGTACATGATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTTTTGCACCATGTATGTATGAGCTCTGTGTTTGTACATGATGG  900

seq1  CTGATGAGGTTCAAAG-AAGGCATCAGATCTCTCGGAATGGAATGCATAA  949
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  CTGATGAGGTTCAAAGAAAGGCATCAGATCTCTCGGAATGGAATGCAT-A  949

seq1  ATTGTTTGCGGACATAAAGGGGATGCTGAGAACTATACCCATGGCTCTAT  999
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  ATTGTTTGCGGACAATAAGGGGATGCTGAGAACTATACCCATGGCTCTAT  999

seq1  GAGATGAGGAAGTGCTGTTCA-CTACTGAGACATCTCTGCAGTGCTCCTC  1048
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAGATGAGGAAGTGCTGTTCACCTACTGAGACATCTCTGCAGTGCTCCTC  1049

seq1  CCATCCCATTTCCACTGTCACTTGAGCT-CCCCACTGATTCTACCACAAT  1097
      |||| |||||||||||||||| |||||| ||||||||| |||| |||| |
seq2  CCAT-CCATTTCCACTGTCAC-TGAGCTCCCCCACTGAATCTA-CACAGT  1096

seq1  TCCTCCAAAATATCCATGATCCCTTTGCTACAGTCTTTCTCTATACCTTA  1147
        || ||||||||||||||| || ||||||||||| ||||||||||||||
seq2  --CT-CAAAATATCCATGATTCC-TTGCTACAGTC-TTCTCTATACCTTA  1141

seq1  TAGGAGTCTTTGTTCTGCT  1166
      || ||||||| ||||||||
seq2  TA-GAGTCTTGGTTCTGCT  1159

seq1: chr13_66192918_66193077
seq2: B6Ng01-320M18.g_616_937

seq1  TGTAGTGAATGTGACAAATG-TTTACCCAAAAATATAATCTTAATGTTCA  49
      ||||||||||||||||| || |||   || ||||| | ||||| | ||||
seq2  TGTAGTGAATGTGACAAGTGCTTTGTTCATAAATACAGTCTTAGTATTCA  50

seq1  TCAGAGAATTCATACAGGGGGAAAACCTTATAAATGTAGTGAATGTGACA  99
      |||||||||||||||||| |  |||||||||||||||| ||||||| |  
seq2  TCAGAGAATTCATACAGGAGAGAAACCTTATAAATGTAATGAATGTAATG  100

seq1  AATGCTTCACTCACAAATATGATCTTATAATTCATCAGAGAATTCATACA  149
      ||| ||| |   | |||| |  |||||  | |||||||| ||| || |||
seq2  AATTCTTTAGATATAAATGTAGTCTTAGGACTCATCAGAAAATGCACACA  150

seq1  GGAGAGAAACC---------------------------------------  160
        |||| |                                          
seq2  TTAGAGCATATTTACAAATGAAACAAATGACACAAACCCTTCAAAAAAGA  200

seq1  --------------------------------------------------  160
                                                        
seq2  TCATGTTAAAACTCATCAAACAATATATACAGGAGAGTGTCCTTTCAAAT  250

seq1  --------------------------------------------------  160
                                                        
seq2  ATAAATGTTTAAATCCTTTACTGTTAGCTCATCTCTGACAGTACATCAGA  300

seq1  ----------------------  160
                            
seq2  GAATTCATACGGGAGAGAAACC  322