BAC Information

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BAC

Clone NameB6Ng01-321N09
Chromosome17 (Build37)
Map Location 42,840,128 - 42,841,064
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627626, Opn5, Gpr115
Downstream geneGpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110, Gpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321N09.bB6Ng01-321N09.g
ACCGA110841GA110842
length951940
definitionB6Ng01-321N09.b B6Ng01-321N09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgcttggagagtagaacttaaatacaatcagaaagtagttcgtt
attcatgtgaatttcatgctaccattgcacctgtgggcatatcttgccag
gtcatgattattgtagcttgcaaggttcatactgggttacttttctactt
tggtagtgtgtaagtagcaagtggacatgaagcttctagactagtgatag
ctttatttgtcctccttctagtgactcaagtatatggtatcttcagcaat
agggtcttactgtcaagttctgaagggtaatgattagcatctgtactagc
ctgtaaggttttagctgggggaggtctgtgagatctcactggccaacaac
tccaaaagagataagcaatttctagtactgagcttcttttgttagcctat
tgtgtctagtagggtcattgtctattatagggtaaatctattttaactct
cttaatttatttttattttatgtgtgtatgtgccctatgtgcatgcctat
actctgagaggccagcagagggatcaggtctcctagaactagacttacag
gcatttgtgagctttcatgtgggtgctggaagtgcatgcccctaaatgta
gcacggaatcttttttttttttttttaaattggatattttattcatatac
atttcaaatgttatcccctttcctgattcccccccccctctatttcattc
cccctcctcctgcttttatgagggtgtgtccccatccaccccactcccac
cccccctacccacgcactcccctacactgtggcattgagcctttcacagg
accaaagggcctctccttcccatggatgcctgacaaggccatcctcagct
acatgtaccactggagccatgaatccctccattgcgtactcttggtggtt
gatattgttccacctatggggattcaacctcttcggctcctccagctctt
c
gaattcctcttcatgagaatgaagcattctccctgcccctttgccccccg
ccaatgaggtacactctcacccagagaacccaacccactccccaaagttt
atatagctcttgtccatctccgacataataaagtgagctgtttcactgac
aaccgtctccagagaaagctgtttatcccacactcatgcccatcaaggtc
ctgcctaacctaccggtcctggctaagcttcactccttccagtccaaatt
tggggggtgggggggacaacatagttgaataccccgaggcgagaagaaga
ccctgggcagtgactgatgtgtgagccttcaagtgaaaccccttagtgtc
catcactgagtagatgtggggtgtgctgggggctatttctggtgtacagc
cttcaaatccaagagacagcctcccaaaataatgagagatttaactaatt
ccatttctgccacaagacatgagagtgggatcttgaacaagctgtttctt
tgtcccgagtctccttttcctcatctgtgagaaacagaagtccccttgat
tgttttgaggcttagagctaaggtacataaaatgtgtatcttcagaagag
cttgaagattggtaagagtgacatgtattaagagaaccgtgatgggtttg
gaaagatagctcagtggttaaagagcattgtctgggctgctattccagaa
gaccaggattcaattcccagaacctatatgggagcacacaaccttctgta
actctagttccagatgatccaacacccccttctgtcctctacaggcacta
cacccaccatgccacccagacactggttcaggcaaccctcatatatgggg
aaataaataaattaaaatctcgagatttttttttttaagaagactaattg
tctgttttaaggtgactgcccaaatgactgaagtcaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_42840128_42841064
seq2: B6Ng01-321N09.g_67_1006

seq1  GAATTCCTCTTCATGAGAATGAAGCATTCTCCCTGCCCCTTTGCCCCCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTCATGAGAATGAAGCATTCTCCCTGCCCCTTTGCCCCCCG  50

seq1  CCAATGAGGTACACTCTCACCCAGAGAACCCAACCCACTCCCCAAAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGAGGTACACTCTCACCCAGAGAACCCAACCCACTCCCCAAAGTTT  100

seq1  ATATAGCTCTTGTCCATCTCCGACATAATAAAGTGAGCTGTTTCACTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCTCTTGTCCATCTCCGACATAATAAAGTGAGCTGTTTCACTGAC  150

seq1  AACCGTCTCCAGAGAAAGCTGTTTATCCCACACTCATGCCCATCAAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGTCTCCAGAGAAAGCTGTTTATCCCACACTCATGCCCATCAAGGTC  200

seq1  CTGCCTAACCTACCGGTCCTGGCTAAGCTTCACTCCTTCCAGTCCAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTAACCTACCGGTCCTGGCTAAGCTTCACTCCTTCCAGTCCAAATT  250

seq1  TGGGGGGTGGGGGGGACAACATAGTTGAATACCCCGAGGCGAGAAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGTGGGGGGGACAACATAGTTGAATACCCCGAGGCGAGAAGAAGA  300

seq1  CCCTGGGCAGTGACTGATGTGTGAGCCTTCAAGTGAAACCCCTTAGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGCAGTGACTGATGTGTGAGCCTTCAAGTGAAACCCCTTAGTGTC  350

seq1  CATCACTGAGTAGATGTGGGGTGTGCTGGGGGCTATTTCTGGTGTACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTGAGTAGATGTGGGGTGTGCTGGGGGCTATTTCTGGTGTACAGC  400

seq1  CTTCAAATCCAAGAGACAGCCTCCCAAAATAATGAGAGATTTAACTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATCCAAGAGACAGCCTCCCAAAATAATGAGAGATTTAACTAATT  450

seq1  CCATTTCTGCCACAAGACATGAGAGTGGGATCTTGAACAAGCTGTTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTGCCACAAGACATGAGAGTGGGATCTTGAACAAGCTGTTTCTT  500

seq1  TGTCCCGAGTCTCCTTTTCCTCATCTGTGAGAAACAGAAGTCCCCTTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCGAGTCTCCTTTTCCTCATCTGTGAGAAACAGAAGTCCCCTTGAT  550

seq1  TGTTTTGAGGCTTAGAGCTAAGGTACATAAAATGTGTATCTTCAGAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGAGGCTTAGAGCTAAGGTACATAAAATGTGTATCTTCAGAAGAG  600

seq1  CTTGAAGATTGGTAAGAGTGACATGTATTAAGAGAACCGTGATGGGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGATTGGTAAGAGTGACATGTATTAAGAGAACCGTGATGGGTTTG  650

seq1  GAAAGATAGCTCAGTGGTTAAAGAGCATTGTCT-GGCTGCTATTCCAGAA  699
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAAAGATAGCTCAGTGGTTAAAGAGCATTGTCTGGGCTGCTATTCCAGAA  700

seq1  GACCAGGATTCAATTCCCAGAACCTATATGGGAGCACACAACCTTCTGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGATTCAATTCCCAGAACCTATATGGGAGCACACAACCTTCTGTA  750

seq1  ACTCTAGTTCCAGATGATCCAACACCCCCTTCTGTCCTCTACAGGCACTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGTTCCAGATGATCCAACACCCCCTTCTGTCCTCTACAGGCACTA  800

seq1  CACCCA-CATGCCACCCAGACACTGGTTCAGGCAAACCCTCATATATGGG  848
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  CACCCACCATGCCACCCAGACACTGGTTCAGGC-AACCCTCATATATGGG  849

seq1  GAAATAAATAAA-TAAAATCTCGAGATTTTTTTTTTTAAGAAGACTAATG  897
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  GAAATAAATAAATTAAAATCTCGAGATTTTTTTTTTTAAGAAGACTAATT  899

seq1  TTCTGTTTT-AGGTGACTGCACAAATGACTGAGGTCAAAGG  937
       |||||||| |||||||||| ||||||||||| ||||||||
seq2  GTCTGTTTTAAGGTGACTGCCCAAATGACTGAAGTCAAAGG  940