BAC Information

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BAC

Clone NameB6Ng01-323H10
Chromosome17 (Build37)
Map Location 73,108,562 - 73,242,875
singlet/doubletdoublet
Overlap geneYpel5
Upstream geneClip4, Alk
Downstream geneLbh, Lycat, LOC668709, Capn13, LOC100043666, Galnt14, Ehd3, LOC240160, Xdh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323H10.bB6Ng01-323H10.g
ACCGA112031GA112032
length1,0631,197
definitionB6Ng01-323H10.b B6Ng01-323H10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,242,192 - 73,242,875)(73,108,562 - 73,109,735)
sequence
gaattcttccttctccccctccccttcacctctgagagggtgacctcccc
acatatttgctccctgcagcatcctctctcaccgagggcagacaaggcag
ttctctgctatatatgtgccaggggcctcaaaccgaagggctgctcttaa
acaaactgtgttggggcagttggtgattagccagcacctcataccacaca
tataaccaacaaataacgcataaatgaaaggctgatataaaaacaaaaca
gccaaattataacatccctaaaactcaatattgagtttggcaactatttc
ttggatgtggtaccaaaagtacagataacaaaaacaaaaaacatacaact
gagaggtcaccaaactaaaaaccgtttgtgtatcgaagcatacaattcac
ggagtgaaagggtaacatgggatgggaggtgatatctacaaattatattt
gtattggtatgtctaatgactgtgtatctagagtaagtaaagaactgtaa
cacaataataaagaccaaacaacctgacccaaaaataagcaagtttgtaa
ctcggagatgatgtgtatcttttcagataaaaagaataaaattacgtcat
ttgctggaagatagatctacagatgattgtgttaagcaaaatgagccaga
cttggaaagacaaataccatgagatctcgcatttatgagcctagattttt
aaaaattaagacagagaagtcgaaggattacttggagcaaggaaagaggt
ccacagggtgagaaaagtgcacaggagagggcaatgggggggaaatacgg
tcagagtatatcatatacacatataaaaatcagaacaaaccccactattt
tccacagtaaatatgcactaataaaaagatgacatagagagagaggtata
aagtgttttgctgagcaagcatgaggacctgagttcgagccttcacaatc
cttgcaatagctagacgtgtgcttgtgtttgcaatgttcatgccagggca
gaagacaagaagaaaccccttgggacttgctgtcccagcagccttagtag
acctcagccaact

gaattcctataacccagaaaaaactgatgcaaattcacctgttgttggat
gcatttagtagcttccccaaaggctgctgggatttttttttcttcctagt
agacaaaatcccaccatttgcttcttattccatctcaaatttcacaaaaa
tggtgataaggaaatacaaggtaccaggagccagaaaatcaacaagaata
gaaccaacacaaaattttaatgatggagaggaatttaacaaatcctttga
attctaacttggatcttggatttgtttacttagcttgctggggtggcagg
agagatccagcaacaaggttaaaaactaattcaggacacaaacattgagg
aattaaaggtgcagtcaccttctaaaggtgaaatgcaggatgaggtataa
aaacagcattatctatctattcagtaggtgggaggccccatgacaagcat
cttcaagccacaggaggcagtgtgcctagtgctctgagcaccatggtgct
ctcattcacatccacatggcattctttgcaggccagtttgtgctccattt
tattgtcgcttttagaaagagacatctccttgacagcatttgcaaatcat
gttttgttttcccctctataatttgcagcacggaaagccttccttatgtc
agagttggtctcatcactttgcttggaggagggaaacagggcggacaagc
aaagctacagacctaagttaaagtggagcaccacgtataaatattgtaat
ggcatcttctcgatacggggcttaagagcttcctatacctgtaggcttca
ccttgtttctaacgtatagtgattttctttaagcatcagtttgaagtaaa
aagtaaatcaacagagctgaaatatatcctaatgtcctagacttttacca
tactagcattcttaactgcttattgtatactatactttgtgagctgtctg
actctcaataacaacactgggatatgggaaagaaatactgccttactgta
taaactttccacttattcctgacgatgggttgcctaccactctccatctt
actaacataggaatttggcctcctggaagggggagggaacttaggtcatc
tcgaagaacatcattgtattatgtatgccagggaggtgagatcaggtaat
ggacatgggtacttgcctattatccctcctggtaacctctctcagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_73242192_73242875
seq2: B6Ng01-323H10.b_416_1107 (reverse)

seq1  AGTTTGCTGA-GTCTACT-AGGCTGGCTGGCCAGCAAGTCCC-AGGGGTT  47
      |||| ||||| ||||||| ||||||   || ||||||||||| |||||||
seq2  AGTTGGCTGAGGTCTACTAAGGCTGCTGGGACAGCAAGTCCCAAGGGGTT  50

seq1  --CTCTTGTC-TCTGCCCTGGCATTGACATTGCAAACAC-AGCACCACGT  93
         ||||||| |||||||||||||  ||||||||||||| |||| |||||
seq2  TCTTCTTGTCTTCTGCCCTGGCATGAACATTGCAAACACAAGCA-CACGT  99

seq1  CTAGCTATTTGCAAGGATTGTG-AGGCTCGAACTCAGGTCCTCATGCTTG  142
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  CTAGCTA-TTGCAAGGATTGTGAAGGCTCGAACTCAGGTCCTCATGCTTG  148

seq1  CTCAGC-AAACACTTTATACCTCTCTCTCTATGTCATCTTTTTATTAGTG  191
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAAAACACTTTATACCTCTCTCTCTATGTCATCTTTTTATTAGTG  198

seq1  CATATTTACTGTGGAAAATAGTGGGGTTTGTTCTGATTTTTATATGTGTA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTACTGTGGAAAATAGTGGGGTTTGTTCTGATTTTTATATGTGTA  248

seq1  TATGATATACTCTGACCGTATTT-CCCCCCATTGCCCTCTCCTGTGCACT  290
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TATGATATACTCTGACCGTATTTCCCCCCCATTGCCCTCTCCTGTGCACT  298

seq1  TTTCTCACCCTGTGGACCTCTTTCCTTGCTCCAAGTAATCCTTCGACTTC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCACCCTGTGGACCTCTTTCCTTGCTCCAAGTAATCCTTCGACTTC  348

seq1  TCTGTCTTAATTTTTAAAAATCTAGGCTCATAAATGCGAGATCTCATGGT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTAATTTTTAAAAATCTAGGCTCATAAATGCGAGATCTCATGGT  398

seq1  ATTTGTCTTTCCAAGTCTGGCTCATTTTGCTTAACACAATCATCTGTAGA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCTTTCCAAGTCTGGCTCATTTTGCTTAACACAATCATCTGTAGA  448

seq1  TCTATCTTCCAGCAAATGACGTAATTTTATTCTTTTTATCTGAAAAGATA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTTCCAGCAAATGACGTAATTTTATTCTTTTTATCTGAAAAGATA  498

seq1  CACATCATCTCCGAGTTACAAACTTGCTTATTTTTGGGTCAGGTTGTTTG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCATCTCCGAGTTACAAACTTGCTTATTTTTGGGTCAGGTTGTTTG  548

seq1  GTCTTTATTATTGTGTTACAGTTCTTTACTTACTCTAGATACACAGTCAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATTATTGTGTTACAGTTCTTTACTTACTCTAGATACACAGTCAT  598

seq1  TAGACATACCAATACAAATATAATTTGTAGATATCACCTCCCATCCCATG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATACCAATACAAATATAATTTGTAGATATCACCTCCCATCCCATG  648

seq1  TTACCCTTTCACTCCGTGAATTGTATGCTTCGATACACAAACGG  684
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTTTCACTCCGTGAATTGTATGCTTCGATACACAAACGG  692


seq1: chr17_73108562_73109735
seq2: B6Ng01-323H10.g_67_1263

seq1  GAATTCCTATAACCCAGAAAAAACTGATGCAAATTCACCTGTTGTTGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATAACCCAGAAAAAACTGATGCAAATTCACCTGTTGTTGGAT  50

seq1  GCATTTAGTAGCTTCCCCAAAGGCTGCTGGGATTTTTTTTTCTTCCTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAGTAGCTTCCCCAAAGGCTGCTGGGATTTTTTTTTCTTCCTAGT  100

seq1  AGACAAAATCCCACCATTTGCTTCTTATTCCATCTCAAATTTCACAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAATCCCACCATTTGCTTCTTATTCCATCTCAAATTTCACAAAAA  150

seq1  TGGTGATAAGGAAATACAAGGTACCAGGAGCCAGAAAATCAACAAGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATAAGGAAATACAAGGTACCAGGAGCCAGAAAATCAACAAGAATA  200

seq1  GAACCAACACAAAATTTTAATGATGGAGAGGAATTTAACAAATCCTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAACACAAAATTTTAATGATGGAGAGGAATTTAACAAATCCTTTGA  250

seq1  ATTCTAACTTGGATCTTGGATTTGTTTACTTAGCTTGCTGGGGTGGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAACTTGGATCTTGGATTTGTTTACTTAGCTTGCTGGGGTGGCAGG  300

seq1  AGAGATCCAGCAACAAGGTTAAAAACTAATTCAGGACACAAACATTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCCAGCAACAAGGTTAAAAACTAATTCAGGACACAAACATTGAGG  350

seq1  AATTAAAGGTGCAGTCACCTTCTAAAGGTGAAATGCAGGATGAGGTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGGTGCAGTCACCTTCTAAAGGTGAAATGCAGGATGAGGTATAA  400

seq1  AAACAGCATTATCTATCTATTCAGTAGGTGGGAGGCCCCATGACAAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCATTATCTATCTATTCAGTAGGTGGGAGGCCCCATGACAAGCAT  450

seq1  CTTCAAGCCACAGGAGGCAGTGTGCCTAGTGCTCTGAGCACCATGGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGCCACAGGAGGCAGTGTGCCTAGTGCTCTGAGCACCATGGTGCT  500

seq1  CTCATTCACATCCACATGGCATTCTTTGCAGGCCAGTTTGTGCTCCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCACATCCACATGGCATTCTTTGCAGGCCAGTTTGTGCTCCATTT  550

seq1  TATTGTCGCTTTTAGAAAGAGACATCTCCTTGACAGCATTTGCAAATCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCGCTTTTAGAAAGAGACATCTCCTTGACAGCATTTGCAAATCAT  600

seq1  GTTTTGTTTTCCCCTCTATAATTTGCAGCACGGAAAGCCTTCCTTATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTCCCCTCTATAATTTGCAGCACGGAAAGCCTTCCTTATGTC  650

seq1  AGAGTTGGTCTCATCACTTTGCTTGGAGGAGGGAAACAGGGCGGACAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGGTCTCATCACTTTGCTTGGAGGAGGGAAACAGGGCGGACAAGC  700

seq1  AAAGCTACAGACCTAAGTTAAAGTGGAGCACCACGTATAAATATTGTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTACAGACCTAAGTTAAAGTGGAGCACCACGTATAAATATTGTAAT  750

seq1  GGCATCTTCTCGATACGGGGCTTAAGAGCTTCCTATACCTGTAGGCTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTTCTCGATACGGGGCTTAAGAGCTTCCTATACCTGTAGGCTTCA  800

seq1  CCTTGTTTCTAACGTATAGTGATTTTCTTTAAGCATCAGGTTTGAAGTAA  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCTTGTTTCTAACGTATAGTGATTTTCTTTAAGCATCA-GTTTGAAGTAA  849

seq1  AAAGTAAATCAACAGAGCTGAAATATATCCTAATGTCCTAGACTTTTACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAATCAACAGAGCTGAAATATATCCTAATGTCCTAGACTTTTACC  899

seq1  ATACTAGCA-TCTTAACTGC-TATTGTATACTATACTTTGTGAGCTGTCT  948
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  ATACTAGCATTCTTAACTGCTTATTGTATACTATACTTTGTGAGCTGTCT  949

seq1  GACTCTC-ATAACAACACT-GGATAT-GGAAAGAAATACTGCCTTACTGT  995
      ||||||| ||||||||||| |||||| |||||||||||||||||||||||
seq2  GACTCTCAATAACAACACTGGGATATGGGAAAGAAATACTGCCTTACTGT  999

seq1  ATAAAC-TTCCACT--ATCCTGACGAT-GGTTGCCTA-CACTCTCCATC-  1039
      |||||| |||||||   |||||||||| ||||||||| ||||||||||| 
seq2  ATAAACTTTCCACTTATTCCTGACGATGGGTTGCCTACCACTCTCCATCT  1049

seq1  TACT-ACATAGG-ATTTGG-CTCCTGGA--GGGGAGGG-ACTAGGGTCA-  1082
      |||| ||||||| |||||| ||||||||  |||||||| |||  ||||| 
seq2  TACTAACATAGGAATTTGGCCTCCTGGAAGGGGGAGGGAACTTAGGTCAT  1099

seq1  CCCGAAG-ACATCCATTGGATTATGGTAGC--AGGAGGTGAGATCATGTA  1129
      | ||||| |||| ||||| ||||||   ||   ||||||||||||| |||
seq2  CTCGAAGAACAT-CATTGTATTATGTATGCCAGGGAGGTGAGATCAGGTA  1148

seq1  AT-GACAATGGGACTTGCCTTATTATCCTCTCTGG--AC--CTCTCAGAA  1174
      || ||||  || ||||||| ||||||||   ||||  ||  |||||||||
seq2  ATGGACATGGGTACTTGCC-TATTATCCCTCCTGGTAACCTCTCTCAGAA  1197


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