BAC Information

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BAC

Clone NameB6Ng01-323I07
Chromosome3 (Build37)17 (Build37)
Map Location 7,220,806 - 7,221,32761,393,048 - 61,394,034
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801
Downstream genePkia, LOC667807, 3110050N22Rik, Il7, LOC620822, LOC633072
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323I07.bB6Ng01-323I07.g
ACCGA112073GA112074
length972993
definitionB6Ng01-323I07.b B6Ng01-323I07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(7,220,806 - 7,221,327)(61,393,048 - 61,394,034)
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctagag
cttttagatgtgtgtcaagctgctagtatgtgctctctcccgttttttct
gaagcactcatagctatgagtt

gaattctttttaaccttgtggaaaataaaacaaaacaaggaactttttaa
aaaaagaaaatggtacggtttacagttgtaactttttgtgggttgtctgt
ggggtggggcgcttgcttgattattatgttttttttttttaatatttgtt
tggtttgctttgttgtttaaagtgaaagagaaagaaaggctgtgttaggt
tgtcagatgggaagtatctgggaaacattaggagaggaaaatggaacgtc
agaatatactgtttttttgggtttttggggttttttttccagtcaaagaa
taagagagaaggacagcatgaagcaggtagtctaccatttctcatgcagt
tacatcaattatcatgtaggttggagctttgtggaagagcttgtccatat
agcatgggatgaaaggtctactttcagacttcacaggaattttacttacc
ccaaatatgtatttatcatactttctgttatgatcatactctcctcttca
tgaagaaccggtcagtggccccatagtaaaactttcttgaacttgaaatc
ctcagctctcctggaatttgtcattcttggtgtattaattgtggattata
acaaattatgctacaaatactcaaatgtactggttttacttatttttttg
accagttattgtatcccattaatctttgtttctgtcactctgaagttatt
ttataaactatatatattgtcttaatgttttgacttcataatatgattta
atgtacattagaattttctgtgaaagagaagcaacaaattacctctttgc
aaagaaataacaatgttcacagaaaatcatttattatcaagacactcaca
tgtgtcaataactctttcctaatacttttggattattactgatgatgacc
atggtttctttatttttaattttatttggataagtcctaactttaccact
tagttatgataattgttctaagttgggggtgatgggggtttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_7220806_7221327
seq2: B6Ng01-323I07.b_45_566 (reverse)

seq1  TAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTC  50

seq1  CCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCA  100

seq1  GACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGA  150

seq1  TAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACT  200

seq1  CTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACC  250

seq1  AATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTA  300

seq1  ACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGT  350

seq1  TTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGT  400

seq1  AATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGT  450

seq1  TAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAA  500

seq1  GTTCTGGAAAGATCAGGAATTC  522
      ||||||||||||||||||||||
seq2  GTTCTGGAAAGATCAGGAATTC  522


seq1: chr17_61393048_61394034
seq2: B6Ng01-323I07.g_67_1059 (reverse)

seq1  GCAAA-CCCCATCA-CCCCAACTTAGAACAATTATCAT-ACTAAGTGGTA  47
      ||||| |||||||| ||||||||||||||||||||||| |||||||||||
seq2  GCAAACCCCCATCACCCCCAACTTAGAACAATTATCATAACTAAGTGGTA  50

seq1  AAGTTA-GACTTAT-CAAATAAAATTAAAAATAAAG-AACCATGGTCATC  94
      |||||| ||||||| ||||||||||||||||||||| |||||||||||||
seq2  AAGTTAGGACTTATCCAAATAAAATTAAAAATAAAGAAACCATGGTCATC  100

seq1  ATCAGTAAT-ATCCAAAAGTATTAGG-AAGAGTTTATTGACACATGTGAG  142
      ||||||||| |||||||||||||||| ||||| |||||||||||||||||
seq2  ATCAGTAATAATCCAAAAGTATTAGGAAAGAG-TTATTGACACATGTGAG  149

seq1  TGTCTTTGATAATAAATGATTTTCTGTGAACATTGTTATTTCTTTGCAAA  192
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTC-TTGATAATAAATGATTTTCTGTGAACATTGTTATTTCTTTGCAAA  198

seq1  GAGGTAATTTGTTGCTTCTCTTTCACAGAAAATTCTAATGTACATTAAAT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAATTTGTTGCTTCTCTTTCACAGAAAATTCTAATGTACATTAAAT  248

seq1  CATATTATGAAGTCAAAACATTAAGACAATATATATAGTTTATAAAATAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTATGAAGTCAAAACATTAAGACAATATATATAGTTTATAAAATAA  298

seq1  CTTCAGAGTGACAGAAACAAAGATTAATGGGATACAATAACTGGTCAAAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAGTGACAGAAACAAAGATTAATGGGATACAATAACTGGTCAAAA  348

seq1  AAATAAGTAAAACCAGTACATTTGAGTATTTGTAGCATAATTTGTTATAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTAAAACCAGTACATTTGAGTATTTGTAGCATAATTTGTTATAA  398

seq1  TCCACAATTAATACACCAAGAATGACAAATTCCAGGAGAGCTGAGGATTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAATTAATACACCAAGAATGACAAATTCCAGGAGAGCTGAGGATTT  448

seq1  CAAGTTCAAGAAAGTTTTACTATGGGGCCACTGACCGGTTCTTCATGAAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCAAGAAAGTTTTACTATGGGGCCACTGACCGGTTCTTCATGAAG  498

seq1  AGGAGAGTATGATCATAACAGAAAGTATGATAAATACATATTTGGGGTAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGTATGATCATAACAGAAAGTATGATAAATACATATTTGGGGTAA  548

seq1  GTAAAATTCCTGTGAAGTCTGAAAGTAGACCTTTCATCCCATGCTATATG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTCCTGTGAAGTCTGAAAGTAGACCTTTCATCCCATGCTATATG  598

seq1  GACAAGCTCTTCCACAAAGCTCCAACCTACATGATAATTGATGTAACTGC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGCTCTTCCACAAAGCTCCAACCTACATGATAATTGATGTAACTGC  648

seq1  ATGAGAAATGGTAGACTACCTGCTTCATGCTGTCCTTCTCTCTTATTCTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAATGGTAGACTACCTGCTTCATGCTGTCCTTCTCTCTTATTCTT  698

seq1  TGACTGGAAAAAAAACCCCAAAAACCCAAAAAAACAGTATATTCTGACGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGAAAAAAAACCCCAAAAACCCAAAAAAACAGTATATTCTGACGT  748

seq1  TCCATTTTCCTCTCCTAATGTTTCCCAGATACTTCCCATCTGACAACCTA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTCCTCTCCTAATGTTTCCCAGATACTTCCCATCTGACAACCTA  798

seq1  ACACAGCCTTTCTTTCTCTTTCACTTTAAACAACAAAGCAAACCAAACAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCCTTTCTTTCTCTTTCACTTTAAACAACAAAGCAAACCAAACAA  848

seq1  ATATTAAAAAAAAAAAACATAATAATCAAGCAAGCGCCCCACCCCACAGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAAAAAAAAAACATAATAATCAAGCAAGCGCCCCACCCCACAGA  898

seq1  CAACCCACAAAAAGTTACAACTGTAAACCGTACCATTTTCTTTTTTTAAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCACAAAAAGTTACAACTGTAAACCGTACCATTTTCTTTTTTTAAA  948

seq1  AAGTTCCTTGTTTTGTTTTATTTTCCACAAGGTTAAAAAGAATTC  987
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCTTGTTTTGTTTTATTTTCCACAAGGTTAAAAAGAATTC  993


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