BAC Information

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BAC

Clone NameB6Ng01-327A20
Chromosome17 (Build37)
Map Location 87,541,457 - 87,684,540
singlet/doubletdoublet
Overlap geneMcfd2, Ttc7
Upstream geneSrbd1, LOC545228, Prkce, Epas1, 1700090G07Rik, Atp6v1e2, Rhoq, Pigf, Cript, EG433144, Socs5
Downstream gene1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327A20.bB6Ng01-327A20.g
ACCGA114698GA114699
length9821,014
definitionB6Ng01-327A20.b B6Ng01-327A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,683,566 - 87,684,540)(87,541,457 - 87,542,455)
sequence
gaattcaaagaaagagaaatctctgtccgtccaaaaatgcgcttgcatgc
tctgggcagtatttgctttccttcctcttgtgtgtgtgtgtgcgcgcggg
aatgtgcacatatgtgtatgttgtgtaggttgggattgtgtatctaaatt
taacaatgagagaaaaatcacccacagagctgagcaggggaggccatctg
tttttactggtcagttgtgttgtcaaaaaattacaatacatacacagccc
agactggcctcaaactcaaaaccgccctctgcctttggctcctgtgtgac
agaactgcagacacgtgatactatgtccagcaggactgcactctgacttt
aaagtccatcttggaatccttcctcacctttttggctccctaaactttgt
tctcctgggatactgatgagccttcctgggagggctctgaagaagagtgt
aggaaaagcaggcccacgggacgaaaggaggctctgcttcctgtctgggg
cccagcaccttgctctgtgggaccaacctcactcatattcccacacaagg
taccaggtaccaacacctgagtgtgtcccgcgtgcaccagcccagaggat
tcccatacatttcctggaacagggagaaactgaccacttccccctgccat
gctcagacctcctgggattcctgcatgcaggatgctgggaaataccttgc
ccttctattgtagggtccgctgcaactctgaagcctgctgcctttcctct
gagctctacaatctaagccataactgtctaccatcctgcctcctatccac
tctagttgctctgcaagggtactcatcttttgagagaacacaggacaaac
gaaaaggtgtactcagaatcctgggttcagatttcacaacttactggctg
attgaatgaagctatttacctataaatacagcaaatcctagggaaacagg
agtcgcttggggaggagttgacggcttaagtc
gaattcataaattgtgccactaaaatactgtctctgctttttagcaattt
ctttcttgataaagagccaaaagtctcaaattgttttctagaattcggtg
tttgcgtaacagctgtcacggaactcagaagtgagtcctgcagggagcct
ttatgggaaggtgaaatagaccactgtcggcagtaaaacggcaactagat
tttctttttaagtcagagtcagaatttctttggaaataagatgattcttg
gtttctttccctgcttctgttgataaaatgacctgacttaggacagaagg
gtttgttttagctcccacttccaagtccgcggtgacgtcacccctacagc
cagaggagcaggacagatgctggtgcgcagctcactggctccatttcctg
cagtccagggttcccactgggagtgttcctgcccacagtcaagatggtct
ctcaaatataaacccagagcccccgcccctccccctgtcctcgccccgcc
cccttccagataacccgttcctgtctgacagctaataccaaccaaccccg
attctatccagggtttgggaagtcgctcaggtgttggttttgtgtgaaga
atgcggatgtgtttttctgcctggctctttccgagtgtgggtctcatgga
gtatgccagcaaattggaccaagctctgttgttatcatttttggccgtgg
ctttctccagccttgctttgccaacattgcattcaaataatactttttct
ttcataatgtcagagatttttttttttttaagcatcccatgttacttttc
ctaaaattcctgtggggtaacttctcaggaattccattacaaaaaaaaca
aatgtcctacgtaggcatgcctaatgatttgacaaataccagaaaatggg
aaataattctttctatgctaatgacttgaaaccacttagcaacttccggt
ggaacatgaatattagtattttgaaaattgaaaacttctttgaggagccg
tggggttttaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_87683566_87684540
seq2: B6Ng01-327A20.b_48_1029 (reverse)

seq1  GACTTTAGCCGTC-ACTCCTCCC--AGCGACTCCTGTTTCC--TGGATTT  45
      ||||| ||||||| |||||||||  ||||||||||||||||   ||||||
seq2  GACTTAAGCCGTCAACTCCTCCCCAAGCGACTCCTGTTTCCCTAGGATTT  50

seq1  GCTGTATTTATAGGTAAATAGCTTCA-TCAATCAGCCAGTAAGTTGTGAA  94
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCTGTATTTATAGGTAAATAGCTTCATTCAATCAGCCAGTAAGTTGTGAA  100

seq1  ATCTGAACCCAGGATTCTGAGTACACCTTTTCGTTTGTCCTGTGTTCTCT  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAACCCAGGATTCTGAGTACACCTTTTCGTTTGTCCTGTGTTCTCT  150

seq1  C-AAAGATGAGTACCCTTGCAGAGCAACTAGAGTGGATAGGAGGCAGGAT  193
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGATGAGTACCCTTGCAGAGCAACTAGAGTGGATAGGAGGCAGGAT  200

seq1  GGTAGACAGTTATGGCTTAGATTGTAGAGCTCAGAGGAAAGGCAGCAGGC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACAGTTATGGCTTAGATTGTAGAGCTCAGAGGAAAGGCAGCAGGC  250

seq1  TTCAGAGTTGCAGCGGACCCTACAATAGAAGGGCAAGGTATTTCCCAGCA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTTGCAGCGGACCCTACAATAGAAGGGCAAGGTATTTCCCAGCA  300

seq1  TCCTGCATGCAGGAATCCCAGGAGGTCTGAGCATGGCAGGGGGAAGTGGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATGCAGGAATCCCAGGAGGTCTGAGCATGGCAGGGGGAAGTGGT  350

seq1  CAGTTTCTCCCTGTTCCAGGAAATGTATGGGAATCCTCTGGGCTGGTGCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTCCCTGTTCCAGGAAATGTATGGGAATCCTCTGGGCTGGTGCA  400

seq1  CGCGGGACACACTCAGGTGTTGGTACCTGGTACCTTGTGTGGGAATATGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGGACACACTCAGGTGTTGGTACCTGGTACCTTGTGTGGGAATATGA  450

seq1  GTGAGGTTGGTCCCACAGAGCAAGGTGCTGGGCCCCAGACAGGAAGCAGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTTGGTCCCACAGAGCAAGGTGCTGGGCCCCAGACAGGAAGCAGA  500

seq1  GCCTCCTTTCGTCCCGTGGGCCTGCTTTTCCTACACTCTTCTTCAGAGCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTTTCGTCCCGTGGGCCTGCTTTTCCTACACTCTTCTTCAGAGCC  550

seq1  CTCCCAGGAAGGCTCATCAGTATCCCAGGAGAACAAAGTTTAGGGAGCCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGGAAGGCTCATCAGTATCCCAGGAGAACAAAGTTTAGGGAGCCA  600

seq1  AAAAGGTGAGGAAGGATTCCAAGATGGACTTTAAAGTCAGAGTGCAGTCC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTGAGGAAGGATTCCAAGATGGACTTTAAAGTCAGAGTGCAGTCC  650

seq1  TGCTGGACATAGTATCACGTGTCTGCAGTTCTGTCACACAGGAGCCAAAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGACATAGTATCACGTGTCTGCAGTTCTGTCACACAGGAGCCAAAG  700

seq1  GCAGAGGGCGGTTTTGAGTTTGAGGCCAGTCTGGGCTGTGTATGTATTGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGGCGGTTTTGAGTTTGAGGCCAGTCTGGGCTGTGTATGTATTGT  750

seq1  AATTTTTTGACAACACAACTGACCAGTAAAAACAGATGGCCTCCCCTGCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTGACAACACAACTGACCAGTAAAAACAGATGGCCTCCCCTGCT  800

seq1  CAGCTCTGTGGGTGATTTTTCTCTCATTGTTAAATTTAGATACACAATCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGTGGGTGATTTTTCTCTCATTGTTAAATTTAGATACACAATCC  850

seq1  CAACCTACACAACATACACATATGTGCACATTCCCGCGCGCACACACACA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTACACAACATACACATATGTGCACATTCCCGCGCGCACACACACA  900

seq1  CACAAGAGGAAGGAAAGCAAATACTGCCCAGAGCATGCAAGCGCATTTTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGGAAGGAAAGCAAATACTGCCCAGAGCATGCAAGCGCATTTTT  950

seq1  GGACGGACAGAGATTTCTCTTTCTTTGAATTC  975
      ||||||||||||||||||||||||||||||||
seq2  GGACGGACAGAGATTTCTCTTTCTTTGAATTC  982

seq1: chr17_87541457_87542455
seq2: B6Ng01-327A20.g_66_1079

seq1  GAATTCATAAATTGTGCCACTAAAATACTGTCTCTGCTTTTTAGCAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAATTGTGCCACTAAAATACTGTCTCTGCTTTTTAGCAATTT  50

seq1  CTTTCTTGATAAAGAGCCAAAAGTCTCAAATTGTTTTCTAGAATTCGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGATAAAGAGCCAAAAGTCTCAAATTGTTTTCTAGAATTCGGTG  100

seq1  TTTGCGTAACAGCTGTCACGGAACTCAGAAGTGAGTCCTGCAGGGAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCGTAACAGCTGTCACGGAACTCAGAAGTGAGTCCTGCAGGGAGCCT  150

seq1  TTATGGGAAGGTGAAATAGACCACTGTCGGCAGTAAAACGGCAACTAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGAAGGTGAAATAGACCACTGTCGGCAGTAAAACGGCAACTAGAT  200

seq1  TTTCTTTTTAAGTCAGAGTCAGAATTTCTTTGGAAATAAGATGATTCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTAAGTCAGAGTCAGAATTTCTTTGGAAATAAGATGATTCTTG  250

seq1  GTTTCTTTCCCTGCTTCTGTTGATAAAATGACCTGACTTAGGACAGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTCCCTGCTTCTGTTGATAAAATGACCTGACTTAGGACAGAAGG  300

seq1  GTTTGTTTTAGCTCCCACTTCCAAGTCCGCGGTGACGTCACCCCTACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTAGCTCCCACTTCCAAGTCCGCGGTGACGTCACCCCTACAGC  350

seq1  CAGAGGAGCAGGACAGATGCTGGTGCGCAGCTCACTGGCTCCATTTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGCAGGACAGATGCTGGTGCGCAGCTCACTGGCTCCATTTCCTG  400

seq1  CAGTCCAGGGTTCCCACTGGGAGTGTTCCTGCCCACAGTCAAGATGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAGGGTTCCCACTGGGAGTGTTCCTGCCCACAGTCAAGATGGTCT  450

seq1  CTCAAATATAAACCCAGAGCCCCCGCCCCTCCCCCTGTCCTCGCCCCGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATATAAACCCAGAGCCCCCGCCCCTCCCCCTGTCCTCGCCCCGCC  500

seq1  CCCTTCCAGATAACCCGTTCCTGTCTGACAGCTAATACCAACCAACCCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCAGATAACCCGTTCCTGTCTGACAGCTAATACCAACCAACCCCG  550

seq1  ATTCTATCCAGGGTTTGGGAAGTCGCTCAGGTGTTGGTTTTGTGTGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATCCAGGGTTTGGGAAGTCGCTCAGGTGTTGGTTTTGTGTGAAGA  600

seq1  ATGCGGATGTGTTTTTCTGCCTGGCTC-TTCCGAGTGTGGGTCTCATGGA  649
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATGCGGATGTGTTTTTCTGCCTGGCTCTTTCCGAGTGTGGGTCTCATGGA  650

seq1  GTATGCCAGCAAA-TGGACCAAGCTCTGTTGTTATCATTTTTGGCCGTGG  698
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTATGCCAGCAAATTGGACCAAGCTCTGTTGTTATCATTTTTGGCCGTGG  700

seq1  C-TTCTCCAGCCTTGC-TTGCCAACATTGCATTCAAATAATAC-TTTTCT  745
      | |||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  CTTTCTCCAGCCTTGCTTTGCCAACATTGCATTCAAATAATACTTTTTCT  750

seq1  TTCATAAGGTCAGAGA--TTTTTTTTTTTAAGCAT-CCATGTTAC-TTTC  791
      ||||||| ||||||||  ||||||||||||||||| ||||||||| ||||
seq2  TTCATAATGTCAGAGATTTTTTTTTTTTTAAGCATCCCATGTTACTTTTC  800

seq1  CTAAAGTT-CTGT-GGGTAACTTCTCATGAATTCCAGTACAAAAAAAAAC  839
      ||||| || |||| ||||||||||||| |||||||| ||| |||||||||
seq2  CTAAAATTCCTGTGGGGTAACTTCTCAGGAATTCCATTAC-AAAAAAAAC  849

seq1  AGATGT-CTACGTAGGCATGCAT-ATGATTTGACAAATA-CAGAAAAT-G  885
      | |||| |||||||||||||| | ||||||||||||||| |||||||| |
seq2  AAATGTCCTACGTAGGCATGCCTAATGATTTGACAAATACCAGAAAATGG  899

seq1  GAAATAATTTCTTCTATGCTAATGACTTGAAACCACATAGGAACTT-CGG  934
      |||||||||  ||||||||||||||||||||||||| ||| ||||| |||
seq2  GAAATAATTCTTTCTATGCTAATGACTTGAAACCACTTAGCAACTTCCGG  949

seq1  TGGAACATGAAAGAGTAGTATTTTGGAAATTGAAAACTAC-TTGAGGAGC  983
      ||||||||| || | |||||||||| |||||||||||| | |||||||||
seq2  TGGAACATG-AATATTAGTATTTTGAAAATTGAAAACTTCTTTGAGGAGC  998

seq1  AGTGGGGTTTTAAATG  999
       |||||||||||||||
seq2  CGTGGGGTTTTAAATG  1014