BAC Information

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BAC

Clone NameB6Ng01-331M07
Chromosome17 (Build37)
Map Location 70,943,033 - 71,100,063
singlet/doubletdoublet
Overlap geneDlgap1
Upstream geneLOC100043630, LOC623112, LOC623143
Downstream geneTgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1, Lpin2, Emilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43, 4632412N22Rik, BC027072
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331M07.bB6Ng01-331M07.g
ACCGA118050GA118051
length1,01970
definitionB6Ng01-331M07.b B6Ng01-331M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,943,033 - 70,944,043)(71,099,995 - 71,100,063)
sequence
gaattcagagacttggattttcagaaaattatataatatgagggcaatgg
ttctatcagagaattttatagagcgatgttatgctgggaaactgggtagt
atatatcacaattcttaatatgcatgtttgaatctggattccatacatat
tacagtttgtaagaccttaaaagtgtttgtttgtttgtttgtttgtttgg
ggggaaaaatatgagtataagtgtttacagttgtgctatttggagaaaaa
caattttttctccaaaggaaacaaaagtaaaactcacttttttttttttg
agacaaggtctcactatgttgccctagctggcctgatgcaaactgtatag
tccaggctagccctgagatccacctgcctctgcctcctgaatgctaggat
taaaggcattgctaccacacccagcccaaacactgattatttcaaaaaga
cctgtcttttatatatttttctagagggtaaatcagagccctggaatata
gatctatttgtgtctaaaggatatgtttgaggtaattagtgtttttaaag
tactctctttatgaaatgcatgtgactaatactatttatgcacttgaatt
aggttacagagtgaaatattaagaggcaaatgaaagagaaaaggacaaag
cagttaggttaaatatacaaatcagattactgatcaaaaacattgaagag
cagctgcctgatctgtaacaagaatcatttaaaatagtggaggacataaa
atctggacaggaaaatctactcttggatccctttcaaggggccatatggt
atggttctgaaaccttttaaattgaacattaacaattatatattagtttc
ctaagccacagagggaagccattctctctcacctccccatcccgtgttct
tctcttctctctctgctttgtgtgttgctgatctcagaggctatctttca
caaccttaacacaaacaaactagtccattgctccttatcacagggaagtt
tagaggtgtgggggctgca
caaaaacacaccttgcagaggagggtgtagtcagcagattaaaagtgtgt
gtgtgtgtgtgggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_70943033_70944043
seq2: B6Ng01-331M07.b_50_1068

seq1  GAATTCAGAGACTTGGATTTTCAGAAAATTATATAATATGAGGGCAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGACTTGGATTTTCAGAAAATTATATAATATGAGGGCAATGG  50

seq1  TTCTATCAGAGAATTTTATAGAGCGATGTTATGCTGGGAAACTGGGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCAGAGAATTTTATAGAGCGATGTTATGCTGGGAAACTGGGTAGT  100

seq1  ATATATCACAATTCTTAATATGCATGTTTGAATCTGGATTCCATACATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCACAATTCTTAATATGCATGTTTGAATCTGGATTCCATACATAT  150

seq1  TACAGTTTGTAAGACCTTAAAAGTGTTTGTTTGTTTGTTTGTTTGTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTGTAAGACCTTAAAAGTGTTTGTTTGTTTGTTTGTTTGTTTGG  200

seq1  GGGGAAAAATATGAGTATAAGTGTTTACAGTTGTGCTATTTGGAGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAAATATGAGTATAAGTGTTTACAGTTGTGCTATTTGGAGAAAAA  250

seq1  CAATTTTTTCTCCAAAGGAAACAAAAGTAAAACTCACTTTTTTTTTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTTCTCCAAAGGAAACAAAAGTAAAACTCACTTTTTTTTTTTTG  300

seq1  AGACAAGGTCTCACTATGTTGCCCTAGCTGGCCTGATGCAAACTGTATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGTCTCACTATGTTGCCCTAGCTGGCCTGATGCAAACTGTATAG  350

seq1  TCCAGGCTAGCCCTGAGATCCACCTGCCTCTGCCTCCTGAATGCTAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTAGCCCTGAGATCCACCTGCCTCTGCCTCCTGAATGCTAGGAT  400

seq1  TAAAGGCATTGCTACCACACCCAGCCCAAACACTGATTATTTCAAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCATTGCTACCACACCCAGCCCAAACACTGATTATTTCAAAAAGA  450

seq1  CCTGTCTTTTATATATTTTTCTAGAGGGTAAATCAGAGCCCTGGAATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTTTATATATTTTTCTAGAGGGTAAATCAGAGCCCTGGAATATA  500

seq1  GATCTATTTGTGTCTAAAGGATATGTTTGAGGTAATTAGTGTTTTTAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATTTGTGTCTAAAGGATATGTTTGAGGTAATTAGTGTTTTTAAAG  550

seq1  TACTCTCTTTATGAAATGCATGTGACTAATACTATTTATGCACTTGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCTTTATGAAATGCATGTGACTAATACTATTTATGCACTTGAATT  600

seq1  AGGTTACAGAGTGAAATATTAAGAGGCAAATGAAAGAGAAAAGGACAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACAGAGTGAAATATTAAGAGGCAAATGAAAGAGAAAAGGACAAAG  650

seq1  CAGTTAGGTTAAAAATACAAATCAGATTACTGATCAAAAACATTGAAGAG  700
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGGTTAAATATACAAATCAGATTACTGATCAAAAACATTGAAGAG  700

seq1  CAGCTGCCTGATCTGTAACAAGAATCATTTAAAATAGTGGAGGACATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCCTGATCTGTAACAAGAATCATTTAAAATAGTGGAGGACATAAA  750

seq1  ATCTGGACAGGAAAATCTACTCTTGGATCCCTTTCAAGGGGCCATATGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGACAGGAAAATCTACTCTTGGATCCCTTTCAAGGGGCCATATGGT  800

seq1  ATGGTTCTGAAACCTTTTAAATTGAACATTAACAATTATATATTAGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCTGAAACCTTTTAAATTGAACATTAACAATTATATATTAGTTTC  850

seq1  CTAAGCCACAGAGGGAAGCCATTCTCTCTCACCT-CCCATCCCGTGTTC-  898
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  CTAAGCCACAGAGGGAAGCCATTCTCTCTCACCTCCCCATCCCGTGTTCT  900

seq1  TCTC-TCTCTCTCTGCTTTGTGTGTTTGCTGATCTCAGA-GCTATC-TTC  945
      |||| ||||||||||||||||||| |||||||||||||| |||||| |||
seq2  TCTCTTCTCTCTCTGCTTTGTGTG-TTGCTGATCTCAGAGGCTATCTTTC  949

seq1  ACAACCTTAACACAAAC-AACTAGTCCATTGCTTCCTATCACAGGGA--G  992
      ||||||||||||||||| ||||||||||||||| | |||||||||||   
seq2  ACAACCTTAACACAAACAAACTAGTCCATTGCTCCTTATCACAGGGAAGT  999

seq1  TTAGAGGTGT-GGGGCTGCA  1011
      |||||||||| |||||||||
seq2  TTAGAGGTGTGGGGGCTGCA  1019

seq1: chr17_71099995_71100063
seq2: B6Ng01-331M07.g_76_145 (reverse)

seq1  CCCCCCCCCCACACACACACACACACTTTTAATCTGCTGACTACACCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCACACACACACACACACTTTTAATCTGCTGACTACACCCTC  50

seq1  CTCTGCAGGGT-TGTTTTTG  69
      ||||||| ||| ||||||||
seq2  CTCTGCAAGGTGTGTTTTTG  70