BAC Information

Click to search

BAC

Clone NameB6Ng01-334J07
Chromosome17 (Build37)
Map Location 22,835,846 - 22,836,982
singlet/doubletsinglet
Overlap geneENSMUSG00000046088
Upstream geneZfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185
Downstream geneEG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334J07.bB6Ng01-334J07.g
ACCGA120051GA120052
length1,1131,179
definitionB6Ng01-334J07.b B6Ng01-334J07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatcctcagtccagtccttagacactgttagaggaaacttcctt
ctttagtctcagcacttgcttgatgaacattttagttttataatgtagga
agttggttacttttgccaactgaaaaaagtttctttgatccagaatagag
gcagcaacatgctcctatgagtgtgaattgacccatttgaacatatagga
aatgtcagtagcggataccttccttatcattggcttttttccaagttcca
tgtataacctgtttgtttttggttttcccccagagaggttggtctcagat
tgaaccagaaagccttctcttacccacaaatcatcttgccactgtgaaac
cagtgagtatgccttgcctggctgattgtgattgtggattatgatccact
tttattaggaactcatctttttttttccaattctaatttattcatgtata
acattctctccacagcactgcatagtgtaaggctgatgtcattgtcaaac
attgcagtgtccccttttagctctacttctaatacatggaaagccactct
ttcagtataaagtaggtgaacaatgctttgtcagtactttttttttcaca
ttcatatatacaattatttattatatactcatatatacatatacttaaaa
ggaacatacaaaacaatgagtgttaattatataacctttaaggagctagt
ctctgtcttctctatcacaattggctatgatttttaaaaatcgaccttaa
attgctcttacacatctcttttaagtgatgaaaaattgaagtaacagaat
aaattagagttggaacaaaggatattagattagtaagaccaagaggtttc
cctaactcaactccttactttaaaatcccttgtaatttatccttgtaaat
atttgcttcttatttttttccatttttattagtatttagctcatttacat
ttccatgctatacccaaagtccccatatccacccacccccactccctgcc
aaccactcccccttttggccctgtgttccctgtactgggcatataagttg
cagttcatgggcctctcttcatgatgcgactagcaatctttgaatataat
gcagctagagtca
gaattcaagaccattgtctgactggagggaggcacagacttcaaagccag
gaatgatccctctgagggggagctcacagacttagcccttttgctggtgg
tgggaaatggctctacccaccctgagaaggtacaccatgaccaggagata
cctgccatgtttaacaatgagaatatgatgtaaagtcaagttaccagact
ttcctgggaagaaagcctttggctccctggattggtaagattaaagcctt
agaataacttatatatgaaaatatgaaaaatactgtcacacagtctgaag
aatttagacaagccttagaaagacttataaatgaaaataacaatactgag
acacagaggaattttgacaagaacctactgaactactgtatgttgaaact
aaaggggagctgtctgagtcatttactatatacaaagcctaaaataagct
ttcgctgatttttttttttttttggtaaaaattaacttcagctgcaaata
gaatagtatcagattcagaagtctgacaaatatcacttgaatctttggct
tttgaaaatgccaatccaaaatgcaaatgggtgattagactttagagaca
agatcatcaccaatagatgaattgattagaaatacaaataatgttggatc
tcatgtttatgattctactgtgattggagaagtaatttctcaacgtttta
agaaaagtcaaaatgttaaatgttttaattgtggtgagcaagttcatttg
atatgggattgtaggcaaagcattcctggatacaatgcttttcctagaga
gaaaaaaattaaagatctatatagaaaacgtttctgaattgattctgcaa
agaaaaatgagacttcagcaattagcaggaatagacccagcaggaattta
gtacccttcactaatgctgaaattgcctcattatgtccagcaatgaacac
ctggcatagagcttgcagtaatttttgggggggagagaggttacacaata
gctcaaaaacagaaactaaatttatttaaaaaatgattgatatcagtcat
atagtagggacgcaaatttgaaccccctacatcgtactgatgaatatcag
agccaagctatcagtcagtatctaggcttcaaggacattctgcccatctt
atgtgttttacgtatgtgtgtcaaagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_22835846_22836982
seq2: B6Ng01-334J07.b_43_1155

seq1  GAATTCCATCCTCAGTCCAGTCCTTAGACACTGTTAGAGGAAACTTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCTCAGTCCAGTCCTTAGACACTGTTAGAGGAAACTTCCTT  50

seq1  CTTTAGTCTCAGCACTTGCTTGATGAACATTTTAGTTTTATAATGTAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTCTCAGCACTTGCTTGATGAACATTTTAGTTTTATAATGTAGGA  100

seq1  AGTTGGTTACTTTTGCCAACTGAAAAAAGTTTCTTTGATCCAGAATAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTTACTTTTGCCAACTGAAAAAAGTTTCTTTGATCCAGAATAGAG  150

seq1  GCAGCAACATGCTCCTATGAGTGTGAATTGACCCATTTGAACATATAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAACATGCTCCTATGAGTGTGAATTGACCCATTTGAACATATAGGA  200

seq1  AATGTCAGTAGCGGATACCTTCCTTATCATTGGCTTTTTTCCAAGTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGTAGCGGATACCTTCCTTATCATTGGCTTTTTTCCAAGTTCCA  250

seq1  TGTATAACCTGTTTGTTTTTGGTTTTCCCCCAGAGAGGTTGGTCTCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAACCTGTTTGTTTTTGGTTTTCCCCCAGAGAGGTTGGTCTCAGAT  300

seq1  TGAACCAGAAAGCCTTCTCTTACCCACAAATCATCTTGCCACTGTGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAGAAAGCCTTCTCTTACCCACAAATCATCTTGCCACTGTGAAAC  350

seq1  CAGTGAGTATGCCTTGCCTGGCTGATTGTGATTGTGGATTATGATCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGTATGCCTTGCCTGGCTGATTGTGATTGTGGATTATGATCCACT  400

seq1  TTTATTAGGAACTCATCTTTTTTTTTCCAATTCTAATTTATTCATGTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAGGAACTCATCTTTTTTTTTCCAATTCTAATTTATTCATGTATA  450

seq1  ACATTCTCTCCACAGCACTGCATAGTGTAAGGCTGATGTCATTGTCAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTCTCCACAGCACTGCATAGTGTAAGGCTGATGTCATTGTCAAAC  500

seq1  ATTGCAGTGTCCCCTTTTAGCTCTACTTCTAATACATGGAAAGCCACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGTGTCCCCTTTTAGCTCTACTTCTAATACATGGAAAGCCACTCT  550

seq1  TTCAGTATAAAGTAGGTGAACAATGCTTTGTCAGTACTTTTTTTTTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTATAAAGTAGGTGAACAATGCTTTGTCAGTACTTTTTTTTTCACA  600

seq1  TTCATATATACAATTATTTATTATATACTCATATATACATATACTTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATATACAATTATTTATTATATACTCATATATACATATACTTAAAA  650

seq1  GGAACATACAAAACAATGAGTGTTAATTATATAACCTTTAAGGAGCTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATACAAAACAATGAGTGTTAATTATATAACCTTTAAGGAGCTAGT  700

seq1  CTCTGTCTTCTCTATCACAATTGGCTATGATTTTTAAAAATCGACCTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTTCTCTATCACAATTGGCTATGATTTTTAAAAATCGACCTTAA  750

seq1  ATTGCTCTTACACATCTCTTTTAAGTGATGAAAAATTGAAGTAACAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCTTACACATCTCTTTTAAGTGATGAAAAATTGAAGTAACAGAAT  800

seq1  AAATTAGAGTTGGAACAAAGGATATTAGATTAGTAAGACCAAGAGGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGAGTTGGAACAAAGGATATTAGATTAGTAAGACCAAGAGGTTTC  850

seq1  CCTAACTCAACTCCTTACTTTAAAATCCCTTGTAATTTATCCTTGTAAAA  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTAACTCAACTCCTTACTTTAAAATCCCTTGTAATTTATCCTTGT-AAA  899

seq1  TATTTGCTTCTTATTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTT  950
      ||||||||||||| |||||||||| ||||||||| |||||||||||||||
seq2  TATTTGCTTCTTA-TTTTTTTCCA-TTTTTATTA-GTATTTAGCTCATTT  946

seq1  ACATTTCCAATGCTATACCCAAAGTCCCCCATATCCACCCACCCCCACTC  1000
      |||||||| |||||||||||||||| ||||||||||||||||||||||| 
seq2  ACATTTCC-ATGCTATACCCAAAGT-CCCCATATCCACCCACCCCCACT-  993

seq1  CCCTGCCCACCCACTCCCCCCTTTTTGGCCCTGGTGTTCCCCTGTACTGG  1050
      ||||| ||| ||||||||||  |||||||||| ||||| ||||||||| |
seq2  CCCTG-CCAACCACTCCCCC--TTTTGGCCCT-GTGTT-CCCTGTACT-G  1037

seq1  GGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAATGATGGCCG  1100
      |||||||||   |||||  ||  |||||||||||||    ||||||  ||
seq2  GGCATATAA--GTTGCAGTTC--ATGGGCCTCTCTT---CATGATG--CG  1078

seq1  ACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCA  1137
      |||| || ||||||  ||||| |||||||||||||||
seq2  ACTA-GCAATCTTTGAATATA-ATGCAGCTAGAGTCA  1113