BAC Information

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BAC

Clone NameB6Ng01-337I01
Chromosome17 (Build37)
Map Location 49,598,381 - 49,699,188
singlet/doubletdoublet
Overlap geneDaam2
Upstream geneUnc5cl, Lrfn2, 1700008K24Rik, LOC672972, Mocs1
Downstream geneKif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337I01.bB6Ng01-337I01.g
ACCGA122109GA122110
length1,1061,043
definitionB6Ng01-337I01.b B6Ng01-337I01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,598,381 - 49,599,493)(49,698,160 - 49,699,188)
sequence
gaattccatacgtgctctccgctcatcttcctccttcctcctccgcatgg
cctccaggtcctgccgggcctccaagaaggcctgcaggaaggtgtcgaag
atgccaaagaattcatccggttgcatcttactctcctgctctccgaaatg
tgtcagtgccttggcaaactgtgaaagacatgggtggaggcataatgagc
ccaagcctgctgcctgtttgcttccagctgagcccagtccaaactggggg
cttgtagcctccgagacaggtggtttgaaccctagggttcaccaatggaa
actttacaatcattggctattcattccttgtctaccctgttactaccccc
accccaaaaaaccatgaggactgacttctggataaataggttgagactac
ttgacagtctacctttgtgccacttctgggtctttttatattgtagatat
gggatcaggagatgttgaccagggcaagacatttctaacgtcaggacctc
cctgtctggaatgggaaaggctctcacaggacacctagtcactgggggac
tcaggggatgggttacctgcttatcccctctgagactcaactttttcatc
tgtcaaatggagatcagcttcctgatgctattgtgagagtgaagtggagt
gacagaaagaagcagctgactctacttggagcagacactgccctctgact
ctgtcttagcatagctcacaatatcatctaggaaacatatcactacacgt
atagtcctcctggaccagaggcttgtgcatcttctggaagtttgctggaa
atgctagctgtctagccccaccctgggtctcctgaataagaacctcaccc
atgggtccatacgcatccacacagaggcaagctcaaggttgagttgggct
cccatgatgttcacccaagtgaccaaaaccctctgattctcagtgttcac
atctgttgaatggactataaactttcagcaaacccataaagtagtagcta
gggattgtgaaacactgtgtggcctggggtgggcttctcagtaagtgctg
caatgccaacacctgtaacccgaagtgtgaatctcaagcacttcaagtct
ggtgtg

gaattccttcgttttggctgcgtcggttgcttccaaagctctcctcacat
tttttgggtttgtttgttttcatttcttgatgaggccctcagactgcaca
gctgagatgccacagagggaggaggcaccttgctttgaacgtgggtatca
ttttgctcacgcttccccaggcttcttagacactggtcacttagaagtgt
tgtgagttactccctaggttttctgaaaagacagtaaacactggccaaat
ggatgaatgagcgaatgaatgagcgagtgaaacaggcaactgaaacagct
agatcctacttctgcaccctattttacaagcaacgttctattagagcacc
cctatgcccatctgcttatgattcttcccatcacatcttctgttctgtct
gatgatattggatggatattttgaagtgaattgtcttagtagtgtctttg
ccatcatagtcatagctttggaccagaggttgttctgtcaggggaggggt
agttttcaccatcatgcccattgttgagacaggaagactgagtatggaag
acaagaaataatttgcagcattaagaaaccaaacacacacaaaaacaaaa
cctgagacatggtgcaggttttgcaaactatgcaaactatctttgttgta
gttcgataacttgggaggtggagacaggtggatccctgaaacttgctgtc
cagcaagccctgcagtgttagtgatctccaggtcaatgagagactctgtc
tcaaaaacataaattaaaaaaaaaagcacatagctacaacaaggtaggca
agcacctgaggcaggatgcaagaactttgacctctggcttccacatgaat
atatatagggcatgagcaacatgaaaacacacacacacacatacacttta
cacattttgttcacatacacacaacaaatcaggtagttataaattttttt
tagcctcatacaggcataaaagaatacctaataggtaatcctaggaaaga
aagaaaggaagtaaggaaggaaagagagagagagagtagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_49598381_49599493
seq2: B6Ng01-337I01.b_45_1150

seq1  GAATTCCATACGTGCTCTCCGCTCATCTTCCTCCTTCCTCCTCCGCATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACGTGCTCTCCGCTCATCTTCCTCCTTCCTCCTCCGCATGG  50

seq1  CCTCCAGGTCCTGCCGGGCCTCCAAGAAGGCCTGCAGGAAGGTGTCGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGGTCCTGCCGGGCCTCCAAGAAGGCCTGCAGGAAGGTGTCGAAG  100

seq1  ATGCCAAAGAATTCATCCGGTTGCATCTTACTCTCCTGCTCTCCGAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAAGAATTCATCCGGTTGCATCTTACTCTCCTGCTCTCCGAAATG  150

seq1  TGTCAGTGCCTTGGCAAACTGTGAAAGACATGGGTGGAGGCATAATGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTGCCTTGGCAAACTGTGAAAGACATGGGTGGAGGCATAATGAGC  200

seq1  CCAAGCCTGCTGCCTGTTTGCTTCCAGCTGAGCCCAGTCCAAACTGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCTGCTGCCTGTTTGCTTCCAGCTGAGCCCAGTCCAAACTGGGGG  250

seq1  CTTGTAGCCTCCGAGACAGGTGGTTTGAACCCTAGGGTTCACCAATGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGCCTCCGAGACAGGTGGTTTGAACCCTAGGGTTCACCAATGGAA  300

seq1  ACTTTACAATCATTGGCTATTCATTCCTTGTCTACCCTGTTACTACCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACAATCATTGGCTATTCATTCCTTGTCTACCCTGTTACTACCCCC  350

seq1  ACCCCAAAAAACCATGAGGACTGACTTCTGGATAAATAGGTTGAGACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAAAAACCATGAGGACTGACTTCTGGATAAATAGGTTGAGACTAC  400

seq1  TTGACAGTCTACCTTTGTGCCACTTCTGGGTCTTTTTATATTGTAGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGTCTACCTTTGTGCCACTTCTGGGTCTTTTTATATTGTAGATAT  450

seq1  GGGATCAGGAGATGTTGACCAGGGCAAGACATTTCTAACGTCAGGACCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCAGGAGATGTTGACCAGGGCAAGACATTTCTAACGTCAGGACCTC  500

seq1  CCTGTCTGGAATGGGAAAGGCTCTCACAGGACACCTAGTCACTGGGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTGGAATGGGAAAGGCTCTCACAGGACACCTAGTCACTGGGGGAC  550

seq1  TCAGGGGATGGGTTACCTGCTTATCCCCTCTGAGACTCAACTTTTTCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGATGGGTTACCTGCTTATCCCCTCTGAGACTCAACTTTTTCATC  600

seq1  TGTCAAATGGAGATCAGCTTCCTGATGCTATTGTGAGAGTGAAGTGGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAATGGAGATCAGCTTCCTGATGCTATTGTGAGAGTGAAGTGGAGT  650

seq1  GACAGAAAGAAGCAGCTGACTCTACTTGGAGCAGACACTGCCCTCTGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAAGAAGCAGCTGACTCTACTTGGAGCAGACACTGCCCTCTGACT  700

seq1  CTGTCTTAGCATAGCTCACAATATCATCTAGGAAACATATCACTACACGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTAGCATAGCTCACAATATCATCTAGGAAACATATCACTACACGT  750

seq1  ATAGTCCTCCTGGACCAGAGGCTTGTGCATCTTCTGGAAGTTTGCTGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCCTCCTGGACCAGAGGCTTGTGCATCTTCTGGAAGTTTGCTGGAA  800

seq1  ATGCTAGCTGTCTAGCCCCACCCTGGGTCTCCTGAATAAGAACCTCACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGCTGTCTAGCCCCACCCTGGGTCTCCTGAATAAGAACCTCACCC  850

seq1  ATGGGTCCATACGCATCCACACAGAGGCAAGCTCAAGGTTGAGTTGGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCCATACGCATCCACACAGAGGCAAGCTCAAGGTTGAGTTGGGCT  900

seq1  CCCATGATGTTCACCCAAGTGACCAAAACCCTCTGATTCTCAGTGTTCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGATGTTCACCCAAGTGACCAAAACCCTCTGATTCTCAGTGTTCAC  950

seq1  ATCTGTTGAATGGGACTATAAACTTTCAGCAAACCCATAAGGTAGGTAGG  1000
      ||||||||||| |||||||||||||||||||||||||||| ||| ||| |
seq2  ATCTGTTGAAT-GGACTATAAACTTTCAGCAAACCCATAAAGTA-GTA-G  997

seq1  CTAGGGATTGTGAAACACTGGTGGTGGGCTGGGGTGGGGCTTCTCCAGTA  1050
      ||||||||||||||||||||   |||| ||||||| |||||||| |||| 
seq2  CTAGGGATTGTGAAACACTG--TGTGGCCTGGGGT-GGGCTTCT-CAGT-  1042

seq1  AAGTGCTTGCCATGCAAACA-CTGTGACCCG-AGTGTG-ATCTCAAGCAC  1097
      |||||| ||| |||| |||| |||| ||||| |||||| |||||||||||
seq2  AAGTGC-TGCAATGCCAACACCTGTAACCCGAAGTGTGAATCTCAAGCAC  1091

seq1  TTCAAGTCTGGGTGTG  1113
      ||||||||| ||||||
seq2  TTCAAGTCT-GGTGTG  1106


seq1: chr17_49698160_49699188
seq2: B6Ng01-337I01.g_66_1108 (reverse)

seq1  CTCTCT-CTCTCTCTCTCTCTTT-CTTTCTTTCTTTCTTTCTTTCTTTCT  48
      |||||| |||||||||||||||| ||| ||| ||| ||||||||||||| 
seq2  CTCTCTACTCTCTCTCTCTCTTTCCTTCCTTACTTCCTTTCTTTCTTTCC  50

seq1  TATGATTACCTA-TAGGTAT--CTTTATG-CTGTATGAGGCT-AAAAAAA  93
      || ||||||||| |||||||   |||||| |||||||||||| |||||||
seq2  TAGGATTACCTATTAGGTATTCTTTTATGCCTGTATGAGGCTAAAAAAAA  100

seq1  TTTATAACTACCTGATTTG-TGTGTGTATGTGAAC-AAATGTGT-AAGTG  140
      ||||||||||||||||||| ||||||||||||||| |||||||| |||||
seq2  TTTATAACTACCTGATTTGTTGTGTGTATGTGAACAAAATGTGTAAAGTG  150

seq1  TATGTGTGTGTGTGTGTTTTCATG-TGCTCATG-CCTATATATATTCATG  188
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  TATGTGTGTGTGTGTGTTTTCATGTTGCTCATGCCCTATATATATTCATG  200

seq1  TGGAAGCCAGAGGTC-AAGTTCTTGCATCCTGCCTCAGGTGCTTGCCTAC  237
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGGAAGCCAGAGGTCAAAGTTCTTGCATCCTGCCTCAGGTGCTTGCCTAC  250

seq1  CTTGTTGTAGCTATGTGC-TTTTTTTTTAATTTATGTTTTTGAGACAGAG  286
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTTGTTGTAGCTATGTGCTTTTTTTTTTAATTTATGTTTTTGAGACAGAG  300

seq1  TCTCTCATTGACCTGGAGATCACTAACACTGCAGGGCTTGCTGGACAGCA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATTGACCTGGAGATCACTAACACTGCAGGGCTTGCTGGACAGCA  350

seq1  AGTTTCAGGGATCCACCTGTCTCCACCTCCCAAGTTATCGAACTACAACA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGGGATCCACCTGTCTCCACCTCCCAAGTTATCGAACTACAACA  400

seq1  AAGATAGTTTGCATAGTTTGCAAAACCTGCACCATGTCTCAGGTTTTGTT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGTTTGCATAGTTTGCAAAACCTGCACCATGTCTCAGGTTTTGTT  450

seq1  TTTGTGTGTGTTTGGTTTCTTAATGCTGCAAATTATTTCTTGTCTTCCAT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGTGTTTGGTTTCTTAATGCTGCAAATTATTTCTTGTCTTCCAT  500

seq1  ACTCAGTCTTCCTGTCTCAACAATGGGCATGATGGTGAAAACTACCCCTC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTCTTCCTGTCTCAACAATGGGCATGATGGTGAAAACTACCCCTC  550

seq1  CCCTGACAGAACAACCTCTGGTCCAAAGCTATGACTATGATGGCAAAGAC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACAGAACAACCTCTGGTCCAAAGCTATGACTATGATGGCAAAGAC  600

seq1  ACTACTAAGACAATTCACTTCAAAATATCCATCCAATATCATCAGACAGA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTAAGACAATTCACTTCAAAATATCCATCCAATATCATCAGACAGA  650

seq1  ACAGAAGATGTGATGGGAAGAATCATAAGCAGATGGGCATAGGGGTGCTC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGATGTGATGGGAAGAATCATAAGCAGATGGGCATAGGGGTGCTC  700

seq1  TAATAGAACGTTGCTTGTAAAATAGGGTGCAGAAGTAGGATCTAGCTGTT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAACGTTGCTTGTAAAATAGGGTGCAGAAGTAGGATCTAGCTGTT  750

seq1  TCAGTTGCCTGTTTCACTCGCTCATTCATTCGCTCATTCATCCATTTGGC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGCCTGTTTCACTCGCTCATTCATTCGCTCATTCATCCATTTGGC  800

seq1  CAGTGTTTACTGTCTTTTCAGAAAACCTAGGGAGTAACTCACAACACTTC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTACTGTCTTTTCAGAAAACCTAGGGAGTAACTCACAACACTTC  850

seq1  TAAGTGACCAGTGTCTAAGAAGCCTGGGGAAGCGTGAGCAAAATGATACC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGACCAGTGTCTAAGAAGCCTGGGGAAGCGTGAGCAAAATGATACC  900

seq1  CACGTTCAAAGCAAGGTGCCTCCTCCCTCTGTGGCATCTCAGCTGTGCAG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTCAAAGCAAGGTGCCTCCTCCCTCTGTGGCATCTCAGCTGTGCAG  950

seq1  TCTGAGGGCCTCATCAAGAAATGAAAACAAACAAACCCAAAAAATGTGAG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGGCCTCATCAAGAAATGAAAACAAACAAACCCAAAAAATGTGAG  1000

seq1  GAGAGCTTTGGAAGCAACCGACGCAGCCAAAACGAAGGAATTC  1029
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTTTGGAAGCAACCGACGCAGCCAAAACGAAGGAATTC  1043


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