BAC Information

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BAC

Clone NameB6Ng01-339G17
Chromosome17 (Build37)
Map Location 64,660,899 - 64,784,708
singlet/doubletdoublet
Overlap genePja2
Upstream geneFbxl17, Ppia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2, LOC669778
Downstream geneLOC100043582, Man2a1, 4930583I09Rik, LOC100043871, E130009J12Rik, LOC668655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339G17.bB6Ng01-339G17.g
ACCGA123420GA123421
length6831,074
definitionB6Ng01-339G17.b B6Ng01-339G17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,660,899 - 64,661,581)(64,783,440 - 64,784,708)
sequence
gaattctctaaaagggaacaatcacagaagaaatcaaacatatgctattc
catctttaaaattacaaatggatgttatatataaagcttagaacagacac
cagcatttaaacaacatgaatattaattcatattttactaaagagtatag
tattatacacatattgcttagtgtgggtcaaaaatggggccccgtgtctg
gtccagggctctagccactgggcaaggtgggatgagggaagtctgactac
gtggcaaactccacactgccagtgggtggacattgggatgtgagaagccg
caggaccccactatgggtgtagggaaggtggagtccagggtccccgtgga
cctgccagaattggctcagggtctccaggcctgcatggaggctgaggatg
acaggttctagcttctgccactgtctgctgtggaagagctgagaacagaa
tgtgggcccgtgggtggactctggcccaggccaaagaataagggcagaga
ggcctcccagcaggaggttaggggaagacctgctccattgctctagcact
tcggatcacaatgagaagaggcagtctatggttttaaggtgtttattata
gaaagtcagagagagggagaagagtagagaagcagaggctggcatggtca
tgttgggggaggggaggcggaaagagggggagc

gaattctctgcttagagtcctgcccaatttttaactgggttgtttatctt
tttgacataaggttttctcagcttgccctgctaggttgtccacacaacag
ggtagaccttgtctccaggactagctgaacaaggcaaacagaactcactg
ggaaggaatctcaaggaagttagtgagggtggtagccaggagaatgtcta
tgttcaaaaatagatttggaatactcaaagatttaataaaaatgcccttg
aaagaaaagagaagccagctgtgaaactaagtcaatcttgaaagtttaag
atatagacatctgtagttcttcccttcctttccagttccaaatagccaac
aaacctatcagaccagagcttctggggtgctgaagtctaggtacttatca
agagaaagtatcagaccagagctcctggggtgctgaagtctaggtactta
tcaagagaaagtagtcagaggaaagaaatcacaccgaggaaagcatgtga
tgaaattcgtcaaccatatttattatgtgatttttaaaggctatgatctt
taaaattaaaaataaaaagattgcattttattacagcagctgaaaatgct
gttaactttacaagtatttaaccatttctggtctccggatttcagaatag
cttttactttcactgcaaagtaaaactttaaatcattccggcccaggttt
cccaaaaacaagaaacaaacaacaaaaacttacttcagctattcacaaaa
gcgtcaagaaaagaggtacggctgaaccttgtagattacacagctgagga
ttcatgaggctaagtgaccactgtcccccagtctgtaagttgtcagatgg
aagtacaaaaaccatgaggaaaatttggttgttgcttttcttttcttttt
ttttttatagatatttttctttattacatctcaaatgttattccctttcc
tggttcctctgcaaaaagccctatcccttccccctcccctgctcacaacc
accctctcccacttctgtctgacatccctacactgggtcatcgagactca
caggacagggctctctccttcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_64660899_64661581
seq2: B6Ng01-339G17.b_44_726

seq1  GAATTCTCTAAAAGGGAACAATCACAGAAGAAATCAAACATATGCTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAAAGGGAACAATCACAGAAGAAATCAAACATATGCTATTC  50

seq1  CATCTTTAAAATTACAAATGGATGTTATATATAAAGCTTAGAACAGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTAAAATTACAAATGGATGTTATATATAAAGCTTAGAACAGACAC  100

seq1  CAGCATTTAAACAACATGAATATTAATTCATATTTTACTAAAGAGTATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTAAACAACATGAATATTAATTCATATTTTACTAAAGAGTATAG  150

seq1  TATTATACACATATTGCTTAGTGTGGGTCAAAAATGGGGCCCCGTGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATACACATATTGCTTAGTGTGGGTCAAAAATGGGGCCCCGTGTCTG  200

seq1  GTCCAGGGCTCTAGCCACTGGGCAAGGTGGGATGAGGGAAGTCTGACTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGGCTCTAGCCACTGGGCAAGGTGGGATGAGGGAAGTCTGACTAC  250

seq1  GTGGCAAACTCCACACTGCCAGTGGGTGGACATTGGGATGTGAGAAGCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAAACTCCACACTGCCAGTGGGTGGACATTGGGATGTGAGAAGCCG  300

seq1  CAGGACCCCACTATGGGTGTAGGGAAGGTGGAGTCCAGGGTCCCCGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCCCACTATGGGTGTAGGGAAGGTGGAGTCCAGGGTCCCCGTGGA  350

seq1  CCTGCCAGAATTGGCTCAGGGTCTCCAGGCCTGCATGGAGGCTGAGGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAGAATTGGCTCAGGGTCTCCAGGCCTGCATGGAGGCTGAGGATG  400

seq1  ACAGGTTCTAGCTTCTGCCACTGTCTGCTGTGGAAGAGCTGAGAACAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTCTAGCTTCTGCCACTGTCTGCTGTGGAAGAGCTGAGAACAGAA  450

seq1  TGTGGGCCCGTGGGTGGACTCTGGCCCAGGCCAAAGAATAAGGGCAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCCCGTGGGTGGACTCTGGCCCAGGCCAAAGAATAAGGGCAGAGA  500

seq1  GGCCTCCCAGCAGGAGGTTAGGGGAAGACCTGCTCCATTGCTCTAGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCCAGCAGGAGGTTAGGGGAAGACCTGCTCCATTGCTCTAGCACT  550

seq1  TCGGATCACAATGAGAAGAGGCAGTCTATGGTTTTAAGGTGTTTATTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGATCACAATGAGAAGAGGCAGTCTATGGTTTTAAGGTGTTTATTATA  600

seq1  GAAAGTCAGAGAGAGGGAGAAGAGTAGAGAAGCAGAGGCTGGCATGGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCAGAGAGAGGGAGAAGAGTAGAGAAGCAGAGGCTGGCATGGTCA  650

seq1  TGTTGGGGGAGGGGAGGCGGAAAGAGGGGGAGC  683
      |||||||||||||||||||||||||||||||||
seq2  TGTTGGGGGAGGGGAGGCGGAAAGAGGGGGAGC  683


seq1: chr17_64783440_64784708
seq2: B6Ng01-339G17.g_64_1137 (reverse)

seq1  AATGAAGGAGCTAGAGAAAGGACCCAAGGAGCTGAAGGGGTTTGCAGCTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCTAGAAGAAACAACAATATGAACTAACCAGTACCCCCAGAGCTCCCAGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  GACTAAACCACCAACCAAAGAACACATGGTGGGACTCATGGCTCCAGCTG  150
                                                        
seq2  --------------------------------------------------  0

seq1  CATATGTAGCAGAGGATGGTTGAGTTGGTCATCAATGAGAGGAGAG-GCC  199
                                       ||||| ||||||| |||
seq2  ---------------------------------AATGA-AGGAGAGAGCC  16

seq1  CTTGGTCCTGTGAAGTCTCGATG-CCCAGTGTAGGGGAATGTCAGGGCCA  248
      ||  |||||||| |||||||||| ||||||||||||  ||||||  | ||
seq2  CT--GTCCTGTG-AGTCTCGATGACCCAGTGTAGGG--ATGTCA--GACA  59

seq1  GAAAGTGGGAGAGGGTGGGTTGGTGAGCAGGGGGAGGGGGAAGGGGATAG  298
      | ||||||||||||||||  | ||||||| |||||||||||| |||||| 
seq2  G-AAGTGGGAGAGGGTGG--TTGTGAGCA-GGGGAGGGGGAA-GGGATA-  103

seq1  GGGCTTTTTGCAGAGGAAACCAGGAAAGGGAATAACATTTGAGATGTAAA  348
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  GGGCTTTTTGCAGAGG-AACCAGGAAAGGGAATAACATTTGAGATGT-AA  151

seq1  TAAAG-AAAATATCTAATAAAAAAAAAAGAAAAGAAAAGCAACAACC-AA  396
      ||||| ||||||||||  ||||||||||||||||||||||||||||| ||
seq2  TAAAGAAAAATATCTATAAAAAAAAAAAGAAAAGAAAAGCAACAACCAAA  201

seq1  TTTTCCTCATGGTTTTTGTACTTCCATCTGACAACTTACAGACTGGGGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCATGGTTTTTGTACTTCCATCTGACAACTTACAGACTGGGGGA  251

seq1  CAGTGGTCACTTAGCCTCATGAATCCTCAGCTGTGTAATCTACAAGGTTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTCACTTAGCCTCATGAATCCTCAGCTGTGTAATCTACAAGGTTC  301

seq1  AGCCGTACCTCTTTTCTTGACGCTTTTGTGAATAGCTGAAGTAAGTTTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGTACCTCTTTTCTTGACGCTTTTGTGAATAGCTGAAGTAAGTTTTT  351

seq1  GTTGTTTGTTTCTTGTTTTTGGGAAACCTGGGCCGGAATGATTTAAAGTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTGTTTCTTGTTTTTGGGAAACCTGGGCCGGAATGATTTAAAGTT  401

seq1  TTACTTTGCAGTGAAAGTAAAAGCTATTCTGAAATCCGGAGACCAGAAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTGCAGTGAAAGTAAAAGCTATTCTGAAATCCGGAGACCAGAAAT  451

seq1  GGTTAAATACTTGTAAAGTTAACAGCATTTTCAGCTGCTGTAATAAAATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAATACTTGTAAAGTTAACAGCATTTTCAGCTGCTGTAATAAAATG  501

seq1  CAATCTTTTTATTTTTAATTTTAAAGATCATAGCCTTTAAAAATCACATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTTTTATTTTTAATTTTAAAGATCATAGCCTTTAAAAATCACATA  551

seq1  ATAAATATGGTTGACGAATTTCATCACATGCTTTCCTCGGTGTGATTTCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATGGTTGACGAATTTCATCACATGCTTTCCTCGGTGTGATTTCT  601

seq1  TTCCTCTGACTACTTTCTCTTGATAAGTACCTAGACTTCAGCACCCCAGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGACTACTTTCTCTTGATAAGTACCTAGACTTCAGCACCCCAGG  651

seq1  AGCTCTGGTCTGATACTTTCTCTTGATAAGTACCTAGACTTCAGCACCCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGTCTGATACTTTCTCTTGATAAGTACCTAGACTTCAGCACCCC  701

seq1  AGAAGCTCTGGTCTGATAGGTTTGTTGGCTATTTGGAACTGGAAAGGAAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTCTGGTCTGATAGGTTTGTTGGCTATTTGGAACTGGAAAGGAAG  751

seq1  GGAAGAACTACAGATGTCTATATCTTAAACTTTCAAGATTGACTTAGTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAACTACAGATGTCTATATCTTAAACTTTCAAGATTGACTTAGTTT  801

seq1  CACAGCTGGCTTCTCTTTTCTTTCAAGGGCATTTTTATTAAATCTTTGAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGGCTTCTCTTTTCTTTCAAGGGCATTTTTATTAAATCTTTGAG  851

seq1  TATTCCAAATCTATTTTTGAACATAGACATTCTCCTGGCTACCACCCTCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAAATCTATTTTTGAACATAGACATTCTCCTGGCTACCACCCTCA  901

seq1  CTAACTTCCTTGAGATTCCTTCCCAGTGAGTTCTGTTTGCCTTGTTCAGC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTCCTTGAGATTCCTTCCCAGTGAGTTCTGTTTGCCTTGTTCAGC  951

seq1  TAGTCCTGGAGACAAGGTCTACCCTGTTGTGTGGACAACCTAGCAGGGCA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTGGAGACAAGGTCTACCCTGTTGTGTGGACAACCTAGCAGGGCA  1001

seq1  AGCTGAGAAAACCTTATGTCAAAAAGATAAACAACCCAGTTAAAAATTGG  1246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGAAAACCTTATGTCAAAAAGATAAACAACCCAGTTAAAAATTGG  1051

seq1  GCAGGACTCTAAGCAGAGAATTC  1269
      |||||||||||||||||||||||
seq2  GCAGGACTCTAAGCAGAGAATTC  1074


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