BAC Information

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BAC

Clone NameB6Ng01-339N05
Chromosome17 (Build37)
Map Location 9,691,642 - 9,692,713
singlet/doubletsinglet
Overlap geneEG667170
Upstream geneLOC100040817, Pde10a, 1700010I14Rik, EG667165, LOC666143
Downstream gene4932702K14Rik, Qk, LOC675815, Pacrg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339N05.bB6Ng01-339N05.g
ACCGA123714GA123715
length7321,084
definitionB6Ng01-339N05.b B6Ng01-339N05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaacatgtgcacaatgtattttgctcaagtccacaccattccctc
catttttattcatctgctcatattctctcccaacttcctgtgtttttgtt
tttcctcactaagccacttctaagaaagagagtagaaccacctcctggag
catgggcagccactcaggtaggtacctttcccttgaagaaaacagactca
cctgcttgatctttgtcttagggttatcattgttgtgatagaatagcacg
accaaatgcaagttggggaggaaagggtttatttgacttaggcttccacc
tcactatcttcattgatggaagccaaaatagaaatccattacataatcag
ccaccaaatgcagacaccattgcatatgccagcaagattttgctgaaagg
accttgatatagctgtctcttgtgaggctatgccagtgcctggcaaacac
agaagtggatgcttacagtcatctattggatggaacacagggaccccccc
cccatggaggagctagagaaagtacccaaggaactgaagggttctgcaat
cctataggtggaacaacaatatgaactaaccagtacccccagagctcgtg
actctagctgcatatgtagcagaaatggcctagtcggccatcattgagaa
gagaggccccttggtcttgcaaactttatatgccccagtacaggggaaca
ccagggccaagaagtgggtgggtaggggagtg

gaattccatactctttgaggttcaaataaagttcattgtgacaagacttg
taggtatttgatgtgtaggaacaagttctactctgtgggattaataactt
ccagattacttttccatcatttaaagaaaatagcactcccaactcccttc
catgggactgtgggtttaggatacatatccaaaataaactaaaatgataa
ataaagtttacagtgcattaatgttggaggagcatctctgtgagcatctg
ccttaattcatggtaggtctttgtagttaagaacttttccccagtttgaa
agggtatccagagtactctgcagcctaaggataattacagtcctgtctca
acccttcatttgcagacttttaaggagatagaaaagacaattttaaggta
tcctgtgcacaaacagagtaggtggtgtgagagtaggaaaatgtgattat
ataggaacaaaaatattttctcttagtttttaaatttgtatttatcttcc
actccatttaatttgagttgaggttgaagcttaaggaaaggtttttgtga
tagatttaagcacctctatttagacaaagggagatgcatcacagaagatc
aatagagcctgccctggtgtagctctgagcttctccaaacaagcacctct
ctttcatctttctaagtcttcctctatctctctaggctgaaaatcccgac
atgagtattgttttggaaatctaccccaagtctctttatagatagattct
ccctcattttaattgtaataaagtcaatgtcttctttgtggttttcaatt
atattgtataatatattttatatttcatgtatatttttggaagattggag
acatcctaggcattggtaattttgttcaggcaatttaaactgcatgtgac
agtaaagccttactcttttaatttaagctgtatgtaaaaacagagggtcg
cctttgaacctacgtaccaattatgcctccctcctgccctccgtagctct
gccatccatgccctgaacgacaaaaggcaaaaggatcagaccaggttgta
tggttcctaggaaaggagctatgagcatctgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_9691642_9692713
seq2: B6Ng01-339N05.g_67_1150 (reverse)

seq1  TTTCAGATGCTCATAGCTCCCTTTCCT-GGGACCAT-CACACTTGTCTGG  48
      |||||||||||||||||| |||||||| || ||||| ||  || |||| |
seq2  TTTCAGATGCTCATAGCT-CCTTTCCTAGGAACCATACAACCTGGTCT-G  48

seq1  ATCCCTTTGCC-TTTGTCGTTTCAGGCATGGATGGCAGAGCTACGGA-GG  96
      |||| |||||| |||||||||   ||||||||||||||||||||||| ||
seq2  ATCCTTTTGCCTTTTGTCGTTCAGGGCATGGATGGCAGAGCTACGGAGGG  98

seq1  CAGGAGGGA-GCATAATTGGTACGTAGGTTC-AAGGCGACCCTCTGTTTT  144
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  CAGGAGGGAGGCATAATTGGTACGTAGGTTCAAAGGCGACCCTCTGTTTT  148

seq1  TACATACAGCTTAAATTAAAAGAGT-AGGC-TTACTGTCACATGCAGTTT  192
      ||||||||||||||||||||||||| |||| |||||||||||||||||||
seq2  TACATACAGCTTAAATTAAAAGAGTAAGGCTTTACTGTCACATGCAGTTT  198

seq1  TAATTGCCTGAAC-AAATTACCAATGCCTA-GATGTCTCCAATCTTCC-A  239
       |||||||||||| |||||||||||||||| ||||||||||||||||| |
seq2  AAATTGCCTGAACAAAATTACCAATGCCTAGGATGTCTCCAATCTTCCAA  248

seq1  AAATATACATGAAATAT-AAATATATTATACAATATAATTGAAAACCACA  288
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAATATACATGAAATATAAAATATATTATACAATATAATTGAAAACCACA  298

seq1  AAGAAGACATTGACTTTATTACAATT-AAATGAGGGAGAATCTATCTATA  337
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAGAAGACATTGACTTTATTACAATTAAAATGAGGGAGAATCTATCTATA  348

seq1  AAGAGACTTGGGGTAGATTTCC-AAACAATACTCATGTCGGGATTTTCAG  386
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGAGACTTGGGGTAGATTTCCAAAACAATACTCATGTCGGGATTTTCAG  398

seq1  CCTAGAGAGATAGAGGAAGACTTAGAAAGATGAAAGAGAGGTGCTTGTTT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGAGATAGAGGAAGACTTAGAAAGATGAAAGAGAGGTGCTTGTTT  448

seq1  GGAGAAGCTCAGAGCTACACCAGGGCAGGCTCTATTGATCTTCTGTGATG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGCTCAGAGCTACACCAGGGCAGGCTCTATTGATCTTCTGTGATG  498

seq1  CATCTCCCTTTGTCTAAATAGAGGTGCTTAAATCTATCACAAAAACCTTT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCTTTGTCTAAATAGAGGTGCTTAAATCTATCACAAAAACCTTT  548

seq1  CCTTAAGCTTCAACCTCAACTCAAATTAAATGGAGTGGAAGATAAATACA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGCTTCAACCTCAACTCAAATTAAATGGAGTGGAAGATAAATACA  598

seq1  AATTTAAAAACTAAGAGAAAATATTTTTGTTCCTATATAATCACATTTTC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAAACTAAGAGAAAATATTTTTGTTCCTATATAATCACATTTTC  648

seq1  CTACTCTCACACCACCTACTCTGTTTGTGCACAGGATACCTTAAAATTGT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTCACACCACCTACTCTGTTTGTGCACAGGATACCTTAAAATTGT  698

seq1  CTTTTCTATCTCCTTAAAAGTCTGCAAATGAAGGGTTGAGACAGGACTGT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTATCTCCTTAAAAGTCTGCAAATGAAGGGTTGAGACAGGACTGT  748

seq1  AATTATCCTTAGGCTGCAGAGTACTCTGGATACCCTTTCAAACTGGGGAA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCCTTAGGCTGCAGAGTACTCTGGATACCCTTTCAAACTGGGGAA  798

seq1  AAGTTCTTAACTACAAAGACCTACCATGAATTAAGGCAGATGCTCACAGA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTTAACTACAAAGACCTACCATGAATTAAGGCAGATGCTCACAGA  848

seq1  GATGCTCCTCCAACATTAATGCACTGTAAACTTTATTTATCATTTTAGTT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCCTCCAACATTAATGCACTGTAAACTTTATTTATCATTTTAGTT  898

seq1  TATTTTGGATATGTATCCTAAACCCACAGTCCCATGGAAGGGAGTTGGGA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGGATATGTATCCTAAACCCACAGTCCCATGGAAGGGAGTTGGGA  948

seq1  GTGCTATTTTCTTTAAATGATGGAAAAGTAATCTGGAAGTTATTAATCCC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTATTTTCTTTAAATGATGGAAAAGTAATCTGGAAGTTATTAATCCC  998

seq1  ACAGAGTAGAACTTGTTCCTACACATCAAATACCTACAAGTCTTGTCACA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTAGAACTTGTTCCTACACATCAAATACCTACAAGTCTTGTCACA  1048

seq1  ATGAACTTTATTTGAACCTCAAAGAGTATGGAATTC  1072
      ||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTTATTTGAACCTCAAAGAGTATGGAATTC  1084


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