BAC Information

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BAC

Clone NameB6Ng01-342L05
Chromosome17 (Build37)
Map Location 80,063,672 - 80,216,194
singlet/doubletdoublet
Overlap geneAW061290, Cyp1b1, EG668821
Upstream geneStrn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964
Downstream geneArl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342L05.bB6Ng01-342L05.g
ACCGA125700GA125701
length980271
definitionB6Ng01-342L05.b B6Ng01-342L05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,063,672 - 80,064,461)(80,215,924 - 80,216,194)
sequence
gaattcctttgccttttctcttcactcatagtaacttagaaggactgaaa
atactccatagtctagaagtcttcggaaggaatgatgcagccgaatttta
gcatttcaaaaatattgaattgttgcataaacagtcaacttaggcctttg
tttgttaaagacatagggtaaataataataggaaatacgaggctccattg
gtaaattctatcacatatttaaggaaagaacacaccacgtttctgccagc
tcttccagagcctctgtgtagccccgcaccactgtatgccttctggccag
catctctcgtggctataggtatagaacttgtttcaaaatgtagtagcaaa
ctgaaccgcaacgatgtaggaaaagcatacacagtggccgtgtggattct
ttcctgggcttttgagaagcctgtttgacatgtaaaagtcagctagttag
ttcattaataaactgaagagggagaaagatcatatgctgacatcaataga
tacagaaaagcacagtggacagacaattattattcgtggaaagtaaaaca
aacaaaacctctcaaaaaccagaagagtgggaactgcctccgcttagcag
agaacaaaccccagaggagccatggctagcatcattgctgatgtaagagg
gtggctctcctgccgcatatgcatgggagataaggcagggtaggtgtgtt
cctcacaccatggctctcctggttcttctgagaattctggtgaatgcaca
gaagaatgtgagagagacggacaagaaggaaaaaccttgactccttgctg
aagatgtgacagcctttacacccctagaatttagtcagcaacgcaagggt
tgcaggataccaaattaatgtacaacacccagtcaatttaatatactagg
gatatgtaattgaaatttaaaattaaatacattgccatttgcagtaacat
gcacccaaactcaaatatttagggtttaaa
actttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcc
tcccgagtgctgggattaaaggcgtgcgccgccacgttgggctccgaaac
acttttgagaaaaggaaaatgtatccgcttgtaatctcactccaatatta
acctttgcttttacatgttcatcttctcttctcttctcttctcttctctt
ctcttctcttatcttatcttctcttctcttctcttcccttctcttctctt
ctcttctcttctcttctcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_80063672_80064461
seq2: B6Ng01-342L05.b_50_839

seq1  GAATTCCTTTGCCTTTTCTCTTCACTCATAGTAACTTAGAAGGACTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGCCTTTTCTCTTCACTCATAGTAACTTAGAAGGACTGAAA  50

seq1  ATACTCCATAGTCTAGAAGTCTTCGGAAGGAATGATGCAGCCGAATTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCATAGTCTAGAAGTCTTCGGAAGGAATGATGCAGCCGAATTTTA  100

seq1  GCATTTCAAAAATATTGAATTGTTGCATAAACAGTCAACTTAGGCCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCAAAAATATTGAATTGTTGCATAAACAGTCAACTTAGGCCTTTG  150

seq1  TTTGTTAAAGACATAGGGTAAATAATAATAGGAAATACGAGGCTCCATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAAAGACATAGGGTAAATAATAATAGGAAATACGAGGCTCCATTG  200

seq1  GTAAATTCTATCACATATTTAAGGAAAGAACACACCACGTTTCTGCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTCTATCACATATTTAAGGAAAGAACACACCACGTTTCTGCCAGC  250

seq1  TCTTCCAGAGCCTCTGTGTAGCCCCGCACCACTGTATGCCTTCTGGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGAGCCTCTGTGTAGCCCCGCACCACTGTATGCCTTCTGGCCAG  300

seq1  CATCTCTCGTGGCTATAGGTATAGAACTTGTTTCAAAATGTAGTAGCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCGTGGCTATAGGTATAGAACTTGTTTCAAAATGTAGTAGCAAA  350

seq1  CTGAACCGCAACGATGTAGGAAAAGCATACACAGTGGCCGTGTGGATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCGCAACGATGTAGGAAAAGCATACACAGTGGCCGTGTGGATTCT  400

seq1  TTCCTGGGCTTTTGAGAAGCCTGTTTGACATGTAAAAGTCAGCTAGTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGCTTTTGAGAAGCCTGTTTGACATGTAAAAGTCAGCTAGTTAG  450

seq1  TTCATTAATAAACTGAAGAGGGAGAAAGATCATATGCTGACATCAATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAATAAACTGAAGAGGGAGAAAGATCATATGCTGACATCAATAGA  500

seq1  TACAGAAAAGCACAGTGGACAGACAATTATTATTCGTGGAAAGTAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAAAGCACAGTGGACAGACAATTATTATTCGTGGAAAGTAAAACA  550

seq1  AACAAAACCTCTCAAAAACCAGAAGAGTGGGAACTGCCTCCGCTTAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACCTCTCAAAAACCAGAAGAGTGGGAACTGCCTCCGCTTAGCAG  600

seq1  AGAACAAACCCCAGAGGAGCCATGGCTAGCATCATTGCTGATGTAAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAACCCCAGAGGAGCCATGGCTAGCATCATTGCTGATGTAAGAGG  650

seq1  GTGGCTCTCCTGCCGCATATGCATGGGAGATAAGGCAGGGTAGGTGTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCTCCTGCCGCATATGCATGGGAGATAAGGCAGGGTAGGTGTGTT  700

seq1  CCTCACACCATGGCTCTCCTGGTTCTTCTGAGAATTCTGGTGAATGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACACCATGGCTCTCCTGGTTCTTCTGAGAATTCTGGTGAATGCACA  750

seq1  GAAGAATGTGAGAGAGACGGACAAGAAGGAAAAACCTTGA  790
      ||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGTGAGAGAGACGGACAAGAAGGAAAAACCTTGA  790

seq1: chr17_80215924_80216194
seq2: B6Ng01-342L05.g_74_344 (reverse)

seq1  GAAGAGAAGAGAAGAGAAGAGGAGAGAAGAGAAGAGAAGAGAAGAGAAGA  50
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGGGAAGAGAAGAGAAGA  50

seq1  GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA  100
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAAGATAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA  100

seq1  TGAACATGTAAAAGCAAAGGTTAATATTGGAGTGAGATTACAAGCGGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATGTAAAAGCAAAGGTTAATATTGGAGTGAGATTACAAGCGGATA  150

seq1  CATTTTCCTTTTCTCAAAAGTGTTTCGGAGCCCAACGTGGCGGCGCACGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCTTTTCTCAAAAGTGTTTCGGAGCCCAACGTGGCGGCGCACGC  200

seq1  CTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGA  250

seq1  GGCCAGCCTGGTCTACAAAGT  271
      |||||||||||||||||||||
seq2  GGCCAGCCTGGTCTACAAAGT  271