BAC Information

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BAC

Clone NameB6Ng01-343F21
Chromosome17 (Build37)
Map Location 37,880,434 - 38,041,422
singlet/doubletdoublet
Overlap geneOlfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127
Upstream geneLOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1
Downstream geneOlfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136, LOC626985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343F21.bB6Ng01-343F21.g
ACCGA126163GA126164
length1,024881
definitionB6Ng01-343F21.b B6Ng01-343F21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,040,404 - 38,041,422)(37,880,434 - 37,881,314)
sequence
gaattcttcacttaaaagtaacttctttacagctcttttcaaggactcat
ttcttagactatagataacaggattgagggttgggggtagtactgtgtaa
aagatagagagcatgaggtctaaagcagttggtgagtctgaggttggctt
tagataggcacaaatgcctgttgagagaaaaaatgaaacaacgaagagat
ggggcaggcaggtggagaagaccttagatcggccttcagcagagggcatc
ctgagaactgtagagaatatctggcaataggagaaggcaatccccacaaa
gcaggcaaatcccattacagcaatgaaagtagacactttcagtagtccaa
agtcatcattagagcaggagagcttgagcaattgcgggatatcacagaag
aactggtgaataattttgtgcccacagaatctgatagagagtgtacttgc
tgtgaataatgttcctgagatacctccacttagccacacagctgccacag
cccaagtgcactttctgggactcattatgacctcatagtgcagtgggagg
cagatggccacatagcggtcataagacatcactgtgagaatggccacctc
actccaggctaaacctgtgaagaaaaaaacctgcagcatgcactgcccat
atgaaatatagccacttcgtgccagggaactgtcaacatactggggaact
gtgacagagagagatgagaagtccataatggaaaggtgcttcagaaaagt
aatacattggagactggagctgtttgtctatttgttgtgatggtgataat
gatgaagttccctgctgaatccaataggtatgtcaccaagaagagcaaag
cctgtaagatctgcagctcatggttgtcagagaaccccatgaggagaatc
cactcactgtttgtcatgtttcttggcagtcattttgcaaataagtttgt
ggtaacagctaaaaaataaaaaaaaattgtgaatggattaatattttata
tatcctatctatatataatatcat
gaattcctacatgtattgtgtcaaaaacttttagaagtaatattttcctt
gaccagtgtattgatttcttctattttattttcttcacctgagattctct
cttccacctctagtagccggttaatgatgctttcatcagttgttcctatt
ttcttgcctaggttctccatctccacgattctcacagtttgtgttttgtt
tatatttgccctttccattttcaggtcatgagccattttatttatctcct
atacctgtttgattgtatttttctttatttctttaaggaattttatccat
ttcctttttaagggcctctatcagcttaataagctttccttgtgcttcag
ctccattatcaggttatgcagtacttgaagggatagtggtatgaccgact
cttgttgattgtgttcttacactgacctttagccatctgattgtctctct
tgtaggaagctctccggaaatcgaggaagagttgtgcactggaaaatgga
gcacaggggattgaatgcagtttacagctgttggttgtgctttagaggga
cttggtaggcagggatttgggagggattggctttatctggttgtttctgg
tgtctgcaggcctcagagaatgcaggcagagttgagcaacagaaaataag
agtgcagggaacagggcacaagtcatacctgctgtgtatgcttcagcaaa
gaagcaataggcaggggattggggtagggttaagggtcttatctggatgt
ccctggtgctgcaggcctcccaggatgttgggagagcttgtgggacagat
catggtgtgcagggaccagggctcaacaatgctatggcagtaagagattg
cggttgaagaagtctcactggatgtcatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_38040404_38041422
seq2: B6Ng01-343F21.b_46_1069 (reverse)

seq1  ATGATA-TATATATAGATA-GATATATAAAATATTAATACATTTCACAA-  47
      |||||| |||||||||||| |||||||||||||||||| || ||||||| 
seq2  ATGATATTATATATAGATAGGATATATAAAATATTAATCCA-TTCACAAT  49

seq1  TTTTTTTTATTTTTTAGCTGTTACCACAAACTTATTTGCAAAATGACT-C  96
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTTTTTTATTTTTTAGCTGTTACCACAAACTTATTTGCAAAATGACTGC  99

seq1  CAAGAAACATGAC-AACAGTGAGTGGATTCCTCCTCATGGGGTTCTCTGA  145
      ||||||||||||| ||||||||||||||| ||||||||||||||||||||
seq2  CAAGAAACATGACAAACAGTGAGTGGATT-CTCCTCATGGGGTTCTCTGA  148

seq1  CAACCATGAGCTGCAGATCTTACAGGCTTTGCTCTTCTTGGTGACATACC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATGAGCTGCAGATCTTACAGGCTTTGCTCTTCTTGGTGACATACC  198

seq1  TATTGGATTCAGCAGGGAACTTCATCATTATCACCATCACAAC-AATAGA  244
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TATTGGATTCAGCAGGGAACTTCATCATTATCACCATCACAACAAATAGA  248

seq1  CAAACAGCTCCAGTCTCCAATGTATTAC-TTTCTGAAGCACCTTTCCATT  293
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAAACAGCTCCAGTCTCCAATGTATTACTTTTCTGAAGCACCTTTCCATT  298

seq1  ATGGACTTCTCATCTCTCTCTGTCACAGTTCCCCAGTATGTTGACAGTTC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTTCTCATCTCTCTCTGTCACAGTTCCCCAGTATGTTGACAGTTC  348

seq1  CCTGGCACGAAGTGGCTATATTTCATATGGGCAGTGCATGCTGCAGGTTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCACGAAGTGGCTATATTTCATATGGGCAGTGCATGCTGCAGGTTT  398

seq1  TTTTCTTCACAGGTTTAGCCTGGAGTGAGGTGGCCATTCTCACAGTGATG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCACAGGTTTAGCCTGGAGTGAGGTGGCCATTCTCACAGTGATG  448

seq1  TCTTATGACCGCTATGTGGCCATCTGCCTCCCACTGCACTATGAGGTCAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGACCGCTATGTGGCCATCTGCCTCCCACTGCACTATGAGGTCAT  498

seq1  AATGAGTCCCAGAAAGTGCACTTGGGCTGTGGCAGCTGTGTGGCTAAGTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTCCCAGAAAGTGCACTTGGGCTGTGGCAGCTGTGTGGCTAAGTG  548

seq1  GAGGTATCTCAGGAACATTATTCACAGCAAGTACACTCTCTATCAGATTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATCTCAGGAACATTATTCACAGCAAGTACACTCTCTATCAGATTC  598

seq1  TGTGGGCACAAAATTATTCACCAGTTCTTCTGTGATATCCCGCAATTGCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCACAAAATTATTCACCAGTTCTTCTGTGATATCCCGCAATTGCT  648

seq1  CAAGCTCTCCTGCTCTAATGATGACTTTGGACTACTGAAAGTGTCTACTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCTCCTGCTCTAATGATGACTTTGGACTACTGAAAGTGTCTACTT  698

seq1  TCATTGCTGTAATGGGATTTGCCTGCTTTGTGGGGATTGCCTTCTCCTAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCTGTAATGGGATTTGCCTGCTTTGTGGGGATTGCCTTCTCCTAT  748

seq1  TGCCAGATATTCTCTACAGTTCTCAGGATGCCCTCTGCTGAAGGCCGATC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGATATTCTCTACAGTTCTCAGGATGCCCTCTGCTGAAGGCCGATC  798

seq1  TAAGGTCTTCTCCACCTGCCTGCCCCATCTCTTCGTTGTTTCATTTTTTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCTTCTCCACCTGCCTGCCCCATCTCTTCGTTGTTTCATTTTTTC  848

seq1  TCTCAACAGGCATTTGTGCCTATCTAAAGCCAACCTCAGACTCACCAACT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACAGGCATTTGTGCCTATCTAAAGCCAACCTCAGACTCACCAACT  898

seq1  GCTTTAGACCTCATGCTCTCTATCTTTTACACAGTACTACCCCCAACCCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGACCTCATGCTCTCTATCTTTTACACAGTACTACCCCCAACCCT  948

seq1  CAATCCTGTTATCTATAGTCTAAGAAATGAGTCCTTGAAAAGAGCTGTAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTGTTATCTATAGTCTAAGAAATGAGTCCTTGAAAAGAGCTGTAA  998

seq1  AGAAGTTACTTTTAAGTGAAGAATTC  1019
      ||||||||||||||||||||||||||
seq2  AGAAGTTACTTTTAAGTGAAGAATTC  1024

seq1: chr17_37880434_37881314
seq2: B6Ng01-343F21.g_66_946

seq1  GAATTCCTACATGTATTGTGTCAAAAACTTTTAGAAGTAATATTTTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACATGTATTGTGTCAAAAACTTTTAGAAGTAATATTTTCCTT  50

seq1  GACCAGTGTATTGATTTCTTCTATTTTATTTTCTTCACCTGAGATTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGTGTATTGATTTCTTCTATTTTATTTTCTTCACCTGAGATTCTCT  100

seq1  CTTCCACCTCTAGTAGCCGGTTAATGATGCTTTCATCAGTTGTTCCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACCTCTAGTAGCCGGTTAATGATGCTTTCATCAGTTGTTCCTATT  150

seq1  TTCTTGCCTAGGTTCTCCATCTCCACGATTCTCACAGTTTGTGTTTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCCTAGGTTCTCCATCTCCACGATTCTCACAGTTTGTGTTTTGTT  200

seq1  TATATTTGCCCTTTCCATTTTCAGGTCATGAGCCATTTTATTTATCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGCCCTTTCCATTTTCAGGTCATGAGCCATTTTATTTATCTCCT  250

seq1  ATACCTGTTTGATTGTATTTTTCTTTATTTCTTTAAGGAATTTTATCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGTTTGATTGTATTTTTCTTTATTTCTTTAAGGAATTTTATCCAT  300

seq1  TTCCTTTTTAAGGGCCTCTATCAGCTTAATAAGCTTTCCTTGTGCTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTAAGGGCCTCTATCAGCTTAATAAGCTTTCCTTGTGCTTCAG  350

seq1  CTCCATTATCAGGTTATGCAGTACTTGAAGGGATAGTGGTATGACCGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTATCAGGTTATGCAGTACTTGAAGGGATAGTGGTATGACCGACT  400

seq1  CTTGTTGATTGTGTTCTTACACTGACCTTTAGCCATCTGATTGTCTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGATTGTGTTCTTACACTGACCTTTAGCCATCTGATTGTCTCTCT  450

seq1  TGTAGGAAGCTCTCCGGAAATCGAGGAAGAGTTGTGCACTGGAAAATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGAAGCTCTCCGGAAATCGAGGAAGAGTTGTGCACTGGAAAATGGA  500

seq1  GCACAGGGGATTGAATGCAGTTTACAGCTGTTGGTTGTGCTTTAGAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGGGATTGAATGCAGTTTACAGCTGTTGGTTGTGCTTTAGAGGGA  550

seq1  CTTGGTAGGCAGGGATTTGGGAGGGATTGGCTTTATCTGGTTGTTTCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAGGCAGGGATTTGGGAGGGATTGGCTTTATCTGGTTGTTTCTGG  600

seq1  TGTCTGCAGGCCTCAGAGAATGCAGGCAGAGTTGAGCAACAGAAAATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCAGGCCTCAGAGAATGCAGGCAGAGTTGAGCAACAGAAAATAAG  650

seq1  AGTGCAGGGAACAGGGCACAAGTCATACCTGCTGTGTATGCTTCAGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGGGAACAGGGCACAAGTCATACCTGCTGTGTATGCTTCAGCAAA  700

seq1  GAAGCAATAGGCAGGGGATTGGGGTAGGGTTAAGGGTCTTATCTGGATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAATAGGCAGGGGATTGGGGTAGGGTTAAGGGTCTTATCTGGATGT  750

seq1  CCCTGGTGCTGCAGGCCTCCCAGGATGTTGGGAGAGC-TGTGGGACAGAA  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  CCCTGGTGCTGCAGGCCTCCCAGGATGTTGGGAGAGCTTGTGGGACAGAT  800

seq1  CATGGTGTGCAGGGACCAGGGCTCAACAATGCTATGGCAAGTAGGAGATT  849
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  CATGGTGTGCAGGGACCAGGGCTCAACAATGCTATGGC-AGTAAGAGATT  849

seq1  GTGGTTGGAGAGGTCTCACCTGGATGTC-TCTG  881
      | ||||| ||| |||||| ||||||||| ||||
seq2  GCGGTTGAAGAAGTCTCA-CTGGATGTCATCTG  881